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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g28320 |
| prunus_persica | Prupe.1G486000_v2.0.a1 |
| pyrus_communis | pycom08g13280 pycom15g11770 |
| rosa_laevigata | RLG00000011619 RLG00000018407 |
| rosa_multiflora | Rmu_co8401359.1_g000001 Rmu_sc0013249.1_g000003 |
| rosa_roxburghii | Rroxscaffold_7G00170760 |
| rosa_samantha | Rh1AG304200 Rh1CG072500 Rh1DG077400 Rh4DG233900 Rh6AG381200 Rh6BG389400 Rh6CG394600 Rh6DG381300 Rh7AG417200 Rh7BG387500 |
| rosa_wichuraiana | Rw6G033190 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 524 |
| Acc36I | ACCTGC | 1 cut(s) | 291 |
| AccBSI | CCGCTC | 1 cut(s) | 491 |
| AccI | GTMKAC | 2 cut(s) | 668, 678 |
| AccII | CGCG | 2 cut(s) | 465, 707 |
| AclWI | GGATC | 1 cut(s) | 416 |
| AcsI | RAATTY | 3 cut(s) | 68, 561, 712 |
| AcuI | CTGAAG | 2 cut(s) | 397, 667 |
| AcyI | GRCGYC | 3 cut(s) | 521, 630, 791 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 274, 383, 384, 787 |
| AgeI | ACCGGT | 1 cut(s) | 333 |
| AgsI | TTSAA | 5 cut(s) | 73, 139, 144, 343, 639 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 867 |
| AjnI | CCWGG | 3 cut(s) | 153, 206, 573 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 335, 367 |
| AluBI | AGCT | 7 cut(s) | 432, 478, 553, 687, 702, 745, 891 |
| AluI | AGCT | 7 cut(s) | 432, 478, 553, 687, 702, 745, 891 |
| Alw21I | GWGCWC | 1 cut(s) | 185 |
| Alw26I | GTCTC | 2 cut(s) | 309, 729 |
| AlwI | GGATC | 1 cut(s) | 416 |
| AoxI | GGCC | 4 cut(s) | 225, 374, 501, 777 |
| ApeKI | GCWGC | 3 cut(s) | 297, 393, 881 |
| ApoI | RAATTY | 3 cut(s) | 68, 561, 712 |
| AsiGI | ACCGGT | 1 cut(s) | 333 |
| AspLEI | GCGC | 3 cut(s) | 201, 393, 467 |
| AspS9I | GGNCC | 2 cut(s) | 375, 778 |
| AsuC2I | CCSGG | 2 cut(s) | 224, 378 |
| AsuHPI | GGTGA | 1 cut(s) | 242 |
| AsuII | TTCGAA | 1 cut(s) | 447 |
| BanII | GRGCYC | 1 cut(s) | 841 |
| BauI | CACGAG | 1 cut(s) | 527 |
| Bbv12I | GWGCWC | 1 cut(s) | 185 |
| BbvI | GCAGC | 3 cut(s) | 309, 380, 868 |
| BccI | CCATC | 3 cut(s) | 66, 518, 793 |
| BceAI | ACGGC | 4 cut(s) | 298, 415, 679, 819 |
| BciT130I | CCWGG | 3 cut(s) | 155, 208, 575 |
| BcnI | CCSGG | 2 cut(s) | 224, 378 |
| BcoDI | GTCTC | 2 cut(s) | 309, 729 |
| BfmI | CTRYAG | 1 cut(s) | 295 |
| BfoI | RGCGCY | 2 cut(s) | 202, 394 |
| BfuAI | ACCTGC | 1 cut(s) | 291 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 624 |
| Bme1390I | CCNGG | 5 cut(s) | 155, 208, 224, 378, 575 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 867 |
| BmgT120I | GGNCC | 2 cut(s) | 375, 778 |
| BmiI | GGNNCC | 3 cut(s) | 403, 656, 840 |
| BmrFI | CCNGG | 5 cut(s) | 155, 208, 224, 378, 575 |
| BoxI | GACNNNNGTC | 1 cut(s) | 674 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 734, 766 |
| BpmI | CTGGAG | 4 cut(s) | 220, 251, 412, 587 |
| Bpu14I | TTCGAA | 1 cut(s) | 447 |
| BpuMI | CCSGG | 2 cut(s) | 224, 378 |
| Bsa29I | ATCGAT | 1 cut(s) | 163 |
| BsaBI | GATNNNNATC | 2 cut(s) | 163, 169 |
| BsaHI | GRCGYC | 3 cut(s) | 521, 630, 791 |
| BsaI | GGTCTC | 1 cut(s) | 309 |
| BsaJI | CCNNGG | 2 cut(s) | 154, 397 |
| BsaWI | WCCGGW | 1 cut(s) | 333 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 335, 365, 410, 440 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 274, 383, 384, 787 |
| Bse118I | RCCGGY | 2 cut(s) | 333, 657 |
| Bse8I | GATNNNNATC | 2 cut(s) | 163, 169 |
| BseBI | CCWGG | 3 cut(s) | 155, 208, 575 |
| BseCI | ATCGAT | 1 cut(s) | 163 |
| BseDI | CCNNGG | 2 cut(s) | 154, 397 |
| BseGI | GGATG | 1 cut(s) | 510 |
| BseJI | GATNNNNATC | 2 cut(s) | 163, 169 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 274, 383, 384, 787 |
| BseRI | GAGGAG | 2 cut(s) | 667, 831 |
| BseXI | GCAGC | 3 cut(s) | 309, 380, 868 |
| BseYI | CCCAGC | 1 cut(s) | 780 |
| Bsh1236I | CGCG | 2 cut(s) | 465, 707 |
| Bsh1285I | CGRYCG | 2 cut(s) | 311, 678 |
| BshFI | GGCC | 4 cut(s) | 227, 376, 503, 779 |
| BshTI | ACCGGT | 1 cut(s) | 333 |
| BshVI | ATCGAT | 1 cut(s) | 163 |
| BsiEI | CGRYCG | 2 cut(s) | 311, 678 |
| BsiHKAI | GWGCWC | 1 cut(s) | 185 |
| BsiSI | CCGG | 5 cut(s) | 224, 320, 334, 378, 658 |
| BslFI | GGGAC | 1 cut(s) | 622 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 274, 383, 384, 787 |
| BsmAI | GTCTC | 2 cut(s) | 309, 729 |
| BsmBI | CGTCTC | 1 cut(s) | 729 |
| BsmFI | GGGAC | 1 cut(s) | 622 |
| BsnI | GGCC | 4 cut(s) | 227, 376, 503, 779 |
| Bso31I | GGTCTC | 1 cut(s) | 309 |
| Bsp119I | TTCGAA | 1 cut(s) | 447 |
| Bsp1286I | GDGCHC | 2 cut(s) | 185, 841 |
| Bsp143I | GATC | 5 cut(s) | 164, 324, 357, 421, 472 |
| BspANI | GGCC | 4 cut(s) | 227, 376, 503, 779 |
| BspDI | ATCGAT | 1 cut(s) | 163 |
| BspFNI | CGCG | 2 cut(s) | 465, 707 |
| BspLI | GGNNCC | 3 cut(s) | 403, 656, 840 |
| BspMAI | CTGCAG | 1 cut(s) | 299 |
| BspMI | ACCTGC | 1 cut(s) | 291 |
| BspPI | GGATC | 1 cut(s) | 416 |
| BspT104I | TTCGAA | 1 cut(s) | 447 |
| BspTNI | GGTCTC | 1 cut(s) | 309 |
| BsrBI | CCGCTC | 1 cut(s) | 491 |
| BsrFI | RCCGGY | 2 cut(s) | 333, 657 |
| BssAI | RCCGGY | 2 cut(s) | 333, 657 |
| BssECI | CCNNGG | 2 cut(s) | 154, 397 |
| BssMI | GATC | 5 cut(s) | 164, 324, 357, 421, 472 |
| BssNI | GRCGYC | 3 cut(s) | 521, 630, 791 |
| BssSI | CACGAG | 1 cut(s) | 527 |
| Bst2BI | CACGAG | 1 cut(s) | 527 |
| Bst2UI | CCWGG | 3 cut(s) | 155, 208, 575 |
| Bst6I | CTCTTC | 1 cut(s) | 376 |
| BstACI | GRCGYC | 3 cut(s) | 521, 630, 791 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 294 |
| BstBI | TTCGAA | 1 cut(s) | 447 |
| BstC8I | GCNNGC | 5 cut(s) | 229, 625, 659, 777, 849 |
| BstDSI | CCRYGG | 1 cut(s) | 397 |
| BstF5I | GGATG | 1 cut(s) | 510 |
| BstFNI | CGCG | 2 cut(s) | 465, 707 |
| BstH2I | RGCGCY | 2 cut(s) | 202, 394 |
| BstHHI | GCGC | 3 cut(s) | 201, 393, 467 |
| BstKTI | GATC | 5 cut(s) | 167, 327, 360, 424, 475 |
| BstMAI | GTCTC | 2 cut(s) | 309, 729 |
| BstMBI | GATC | 5 cut(s) | 164, 324, 357, 421, 472 |
| BstMCI | CGRYCG | 2 cut(s) | 311, 678 |
| BstNI | CCWGG | 3 cut(s) | 155, 208, 575 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 674 |
| BstSCI | CCNGG | 5 cut(s) | 153, 206, 222, 376, 573 |
| BstSFI | CTRYAG | 1 cut(s) | 295 |
| BstUI | CGCG | 2 cut(s) | 465, 707 |
| BstV1I | GCAGC | 3 cut(s) | 309, 380, 868 |
| Bsu15I | ATCGAT | 1 cut(s) | 163 |
| BsuRI | GGCC | 4 cut(s) | 227, 376, 503, 779 |
| BsuTUI | ATCGAT | 1 cut(s) | 163 |
| BtgI | CCRYGG | 1 cut(s) | 397 |
| BtgZI | GCGATG | 1 cut(s) | 722 |
| BtsCI | GGATG | 1 cut(s) | 510 |
| BtsIMutI | CAGTG | 1 cut(s) | 367 |
| BveI | ACCTGC | 1 cut(s) | 291 |
| Cac8I | GCNNGC | 5 cut(s) | 229, 625, 659, 777, 849 |
| CfoI | GCGC | 3 cut(s) | 201, 393, 467 |
| Cfr10I | RCCGGY | 2 cut(s) | 333, 657 |
| Cfr13I | GGNCC | 2 cut(s) | 375, 778 |
| ClaI | ATCGAT | 1 cut(s) | 163 |
| CseI | GACGC | 3 cut(s) | 619, 780, 857 |
| CspAI | ACCGGT | 1 cut(s) | 333 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 343, 378 |
| CviAII | CATG | 1 cut(s) | 241 |
| DpnI | GATC | 5 cut(s) | 166, 326, 359, 423, 474 |
| DpnII | GATC | 5 cut(s) | 164, 324, 357, 421, 472 |
| DriI | GACNNNNNGTC | 1 cut(s) | 867 |
| Eam1104I | CTCTTC | 1 cut(s) | 376 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 867 |
| EarI | CTCTTC | 1 cut(s) | 376 |
| EciI | GGCGGA | 5 cut(s) | 381, 394, 611, 783, 834 |
| Eco24I | GRGCYC | 1 cut(s) | 841 |
| Eco31I | GGTCTC | 1 cut(s) | 309 |
| Eco32I | GATATC | 1 cut(s) | 161 |
| Eco57I | CTGAAG | 2 cut(s) | 397, 667 |
| EcoRII | CCWGG | 3 cut(s) | 153, 206, 573 |
| EcoRV | GATATC | 1 cut(s) | 161 |
| EcoT38I | GRGCYC | 1 cut(s) | 841 |
| Esp3I | CGTCTC | 1 cut(s) | 729 |
| FaeI | CATG | 1 cut(s) | 244 |
| FaiI | YATR | 2 cut(s) | 29, 242 |
| FaqI | GGGAC | 1 cut(s) | 622 |
| FatI | CATG | 1 cut(s) | 240 |
| FauI | CCCGC | 2 cut(s) | 52, 826 |
| FblI | GTMKAC | 2 cut(s) | 668, 678 |
| FokI | GGATG | 1 cut(s) | 497 |
| FriOI | GRGCYC | 1 cut(s) | 841 |
| GlaI | GCGC | 3 cut(s) | 200, 392, 466 |
| GsaI | CCCAGC | 1 cut(s) | 784 |
| GsuI | CTGGAG | 4 cut(s) | 220, 251, 412, 587 |
| HaeII | RGCGCY | 2 cut(s) | 202, 394 |
| HaeIII | GGCC | 4 cut(s) | 227, 376, 503, 779 |
| HapII | CCGG | 5 cut(s) | 224, 320, 334, 378, 658 |
| HgaI | GACGC | 3 cut(s) | 619, 780, 857 |
| HhaI | GCGC | 3 cut(s) | 201, 393, 467 |
| Hin1I | GRCGYC | 3 cut(s) | 521, 630, 791 |
| Hin1II | CATG | 1 cut(s) | 244 |
| Hin6I | GCGC | 3 cut(s) | 199, 391, 465 |
| HinP1I | GCGC | 3 cut(s) | 199, 391, 465 |
| HincII | GTYRAC | 2 cut(s) | 669, 679 |
| HindII | GTYRAC | 2 cut(s) | 669, 679 |
| HpaII | CCGG | 5 cut(s) | 224, 320, 334, 378, 658 |
| HphI | GGTGA | 1 cut(s) | 242 |
| Hpy166II | GTNNAC | 3 cut(s) | 669, 679, 730 |
| Hpy188I | TCNGA | 2 cut(s) | 96, 177 |
| Hpy188III | TCNNGA | 3 cut(s) | 268, 566, 872 |
| Hpy8I | GTNNAC | 3 cut(s) | 669, 679, 730 |
| HpyAV | CCTTC | 3 cut(s) | 265, 493, 586 |
| HpyCH4IV | ACGT | 2 cut(s) | 261, 521 |
| HpyCH4V | TGCA | 3 cut(s) | 128, 288, 297 |
| HpySE526I | ACGT | 2 cut(s) | 261, 521 |
| Hsp92I | GRCGYC | 3 cut(s) | 521, 630, 791 |
| Hsp92II | CATG | 1 cut(s) | 244 |
| HspAI | GCGC | 3 cut(s) | 199, 391, 465 |
| KroI | GCCGGC | 1 cut(s) | 657 |
| KroNI | GCCGGC | 1 cut(s) | 659 |
| Kzo9I | GATC | 5 cut(s) | 164, 324, 357, 421, 472 |
| LmnI | GCTCC | 4 cut(s) | 368, 407, 654, 844 |
| Lsp1109I | GCAGC | 3 cut(s) | 309, 380, 868 |
| MaeII | ACGT | 2 cut(s) | 261, 521 |
| MaeIII | GTNAC | 1 cut(s) | 416 |
| MalI | GATC | 5 cut(s) | 166, 326, 359, 423, 474 |
| MbiI | CCGCTC | 1 cut(s) | 491 |
| MboI | GATC | 5 cut(s) | 164, 324, 357, 421, 472 |
| MboII | GAAGA | 3 cut(s) | 393, 461, 808 |
| MhlI | GDGCHC | 2 cut(s) | 185, 841 |
| MluCI | AATT | 6 cut(s) | 68, 123, 134, 139, 561, 712 |
| MmeI | TCCRAC | 1 cut(s) | 200 |
| MroNI | GCCGGC | 1 cut(s) | 657 |
| MspI | CCGG | 5 cut(s) | 224, 320, 334, 378, 658 |
| MspR9I | CCNGG | 5 cut(s) | 155, 208, 224, 378, 575 |
| MvaI | CCWGG | 3 cut(s) | 155, 208, 575 |
| MvnI | CGCG | 2 cut(s) | 465, 707 |
| NaeI | GCCGGC | 1 cut(s) | 659 |
| NciI | CCSGG | 2 cut(s) | 224, 378 |
| NdeII | GATC | 5 cut(s) | 164, 324, 357, 421, 472 |
| NgoMIV | GCCGGC | 1 cut(s) | 657 |
| NlaIII | CATG | 1 cut(s) | 244 |
| NlaIV | GGNNCC | 3 cut(s) | 403, 656, 840 |
| NmeAIII | GCCGAG | 2 cut(s) | 472, 479 |
| NspV | TTCGAA | 1 cut(s) | 447 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 405, 704 |
| PdiI | GCCGGC | 1 cut(s) | 659 |
| PinAI | ACCGGT | 1 cut(s) | 333 |
| PshAI | GACNNNNGTC | 1 cut(s) | 674 |
| Psp6I | CCWGG | 3 cut(s) | 153, 206, 573 |
| PspFI | CCCAGC | 1 cut(s) | 780 |
| PspGI | CCWGG | 3 cut(s) | 153, 206, 573 |
| PspN4I | GGNNCC | 3 cut(s) | 403, 656, 840 |
| PspPI | GGNCC | 2 cut(s) | 375, 778 |
| PstI | CTGCAG | 1 cut(s) | 299 |
| SalI | GTCGAC | 2 cut(s) | 667, 677 |
| Sau3AI | GATC | 5 cut(s) | 164, 324, 357, 421, 472 |
| Sau96I | GGNCC | 2 cut(s) | 375, 778 |
| ScrFI | CCNGG | 5 cut(s) | 155, 208, 224, 378, 575 |
| SduI | GDGCHC | 2 cut(s) | 185, 841 |
| SfcI | CTRYAG | 1 cut(s) | 295 |
| SfuI | TTCGAA | 1 cut(s) | 447 |
| Sse9I | AATT | 6 cut(s) | 68, 123, 134, 139, 561, 712 |
| StyD4I | CCNGG | 5 cut(s) | 153, 206, 222, 376, 573 |
| TaiI | ACGT | 2 cut(s) | 264, 524 |
| TaqII | GACCGA | 2 cut(s) | 297, 664 |
| TasI | AATT | 6 cut(s) | 68, 123, 134, 139, 561, 712 |
| TscAI | CASTG | 1 cut(s) | 367 |
| TseI | GCWGC | 3 cut(s) | 297, 393, 881 |
| TspDTI | ATGAA | 1 cut(s) | 725 |
| TspRI | CASTG | 1 cut(s) | 367 |
| XapI | RAATTY | 3 cut(s) | 68, 561, 712 |
| XmiI | GTMKAC | 2 cut(s) | 668, 678 |
| ZraI | GACGTC | 1 cut(s) | 522 |