Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0011527

Physical Location & Seq

Genomic Coordinates Forward (+)

44084595 .. 44085393

Gene Structure 799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG233900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCTCCAGCCAAAATCAGGGACCGGTGCCGGAATCTCATTTTCAGATACGAAGGATGGCGGCGTCAGCTACAATGCTCCCAGCTACACGCTTAATTTCGAGGACGACACCACATGCGTCGACGACATCCTCCTCCTGTCACAGTTGTTGACCTTCGCCTCCTGGAGTCTGACCCCGTTGGAGAAGTCGACCGCAAGCTGGCATATTCTGGACGACGTTCTAGAGGAAGTTGAGGACAACCGGAGATTGAGGTCACCGACAAGGAACAGAGCTGGAGGTCACCAACGGCAAACAGAAGGAGAAGCGTCAACGATCGATGCGTTGACGGATCTCCCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

12.35

Weight (kDa)

4.42

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011527)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g28320
prunus_persica	Prupe.1G486000_v2.0.a1
pyrus_communis	pycom08g13280 pycom15g11770
rosa_laevigata	RLG00000011619 RLG00000018407
rosa_multiflora	Rmu_co8401359.1_g000001 Rmu_sc0013249.1_g000003
rosa_roxburghii	Rroxscaffold_7G00170760
rosa_samantha	Rh1AG304200 Rh1CG072500 Rh1DG077400 Rh4DG233900 Rh6AG381200 Rh6BG389400 Rh6CG394600 Rh6DG381300 Rh7AG417200 Rh7BG387500
rosa_wichuraiana	Rw6G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	26
AccI	GTMKAC	2 cut(s)	120, 188
AciI	CCGC	2 cut(s)	60, 192
AclWI	GGATC	1 cut(s)	336
AcyI	GRCGYC	1 cut(s)	63
AfiI	CCNNNNNNNGG	2 cut(s)	17, 198
AgeI	ACCGGT	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	5 cut(s)	69, 84, 198, 272, 339
AluI	AGCT	5 cut(s)	69, 84, 198, 272, 339
AlwI	GGATC	1 cut(s)	336
AsiGI	ACCGGT	1 cut(s)	23
AspS9I	GGNCC	1 cut(s)	21
AsuHPI	GGTGA	2 cut(s)	246, 272
AvaII	GGWCC	1 cut(s)	21
BanI	GGYRCC	1 cut(s)	26
BccI	CCATC	1 cut(s)	50
BceAI	ACGGC	1 cut(s)	302
BciT130I	CCWGG	1 cut(s)	163
BfaI	CTAG	1 cut(s)	221
BisI	GCNGC	1 cut(s)	61
BlsI	GCNGC	1 cut(s)	62
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	21
BmiI	GGNNCC	2 cut(s)	22, 28
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	1 cut(s)	307
BpmI	CTGGAG	2 cut(s)	184, 294
Bsa29I	ATCGAT	1 cut(s)	315
BsaHI	GRCGYC	1 cut(s)	63
BsaWI	WCCGGW	2 cut(s)	23, 240
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 198
Bse118I	RCCGGY	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	163
BseCI	ATCGAT	1 cut(s)	315
BseGI	GGATG	2 cut(s)	61, 126
BseLI	CCNNNNNNNGG	2 cut(s)	17, 198
BseRI	GAGGAG	1 cut(s)	122
BseYI	CCCAGC	1 cut(s)	80
Bsh1285I	CGRYCG	2 cut(s)	192, 315
BshNI	GGYRCC	1 cut(s)	26
BshTI	ACCGGT	1 cut(s)	23
BshVI	ATCGAT	1 cut(s)	315
BsiEI	CGRYCG	2 cut(s)	192, 315
BsiSI	CCGG	3 cut(s)	24, 30, 241
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	2 cut(s)	17, 198
BsmFI	GGGAC	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	312, 328
BspACI	CCGC	2 cut(s)	60, 192
BspDI	ATCGAT	1 cut(s)	315
BspLI	GGNNCC	2 cut(s)	22, 28
BspPI	GGATC	1 cut(s)	336
BspT107I	GGYRCC	1 cut(s)	26
BsrFI	RCCGGY	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	23
BssMI	GATC	2 cut(s)	312, 328
BssNI	GRCGYC	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	1 cut(s)	144
BstACI	GRCGYC	1 cut(s)	63
BstC8I	GCNNGC	2 cut(s)	196, 200
BstEII	GGTNACC	2 cut(s)	252, 278
BstF5I	GGATG	2 cut(s)	61, 126
BstKTI	GATC	2 cut(s)	315, 331
BstMBI	GATC	2 cut(s)	312, 328
BstMCI	CGRYCG	2 cut(s)	192, 315
BstMWI	GCNNNNNNNGC	1 cut(s)	66
BstNI	CCWGG	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	117
BstPI	GGTNACC	2 cut(s)	252, 278
BstSCI	CCNGG	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
Bsu15I	ATCGAT	1 cut(s)	315
BsuTUI	ATCGAT	1 cut(s)	315
BtsCI	GGATG	2 cut(s)	61, 126
Cac8I	GCNNGC	2 cut(s)	196, 200
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	21
ClaI	ATCGAT	1 cut(s)	315
CseI	GACGC	3 cut(s)	52, 106, 294
CspAI	ACCGGT	1 cut(s)	23
CviAII	CATG	1 cut(s)	114
CviJI	RGCY	6 cut(s)	10, 69, 84, 198, 272, 339
CviKI_1	RGCY	6 cut(s)	10, 69, 84, 198, 272, 339
DpnI	GATC	2 cut(s)	314, 330
DpnII	GATC	2 cut(s)	312, 328
Eco47I	GGWCC	1 cut(s)	21
Eco91I	GGTNACC	2 cut(s)	252, 278
EcoO65I	GGTNACC	2 cut(s)	252, 278
EcoRII	CCWGG	1 cut(s)	161
FaeI	CATG	1 cut(s)	117
FaiI	YATR	2 cut(s)	115, 204
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	1 cut(s)	113
FblI	GTMKAC	2 cut(s)	120, 188
Fnu4HI	GCNGC	1 cut(s)	61
FokI	GGATG	2 cut(s)	68, 113
Fsp4HI	GCNGC	1 cut(s)	61
FspBI	CTAG	1 cut(s)	221
GluI	GCNGC	1 cut(s)	61
GsaI	CCCAGC	1 cut(s)	84
GsuI	CTGGAG	2 cut(s)	184, 294
HapII	CCGG	3 cut(s)	24, 30, 241
HgaI	GACGC	3 cut(s)	52, 106, 294
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	1 cut(s)	117
HincII	GTYRAC	5 cut(s)	121, 150, 189, 309, 324
HindII	GTYRAC	5 cut(s)	121, 150, 189, 309, 324
HinfI	GANTC	2 cut(s)	33, 166
HpaII	CCGG	3 cut(s)	24, 30, 241
HphI	GGTGA	2 cut(s)	246, 272
Hpy166II	GTNNAC	5 cut(s)	121, 150, 189, 309, 324
Hpy188I	TCNGA	2 cut(s)	46, 171
Hpy188III	TCNNGA	2 cut(s)	209, 221
Hpy8I	GTNNAC	5 cut(s)	121, 150, 189, 309, 324
Hpy99I	CGWCG	3 cut(s)	122, 125, 218
HpyAV	CCTTC	3 cut(s)	46, 163, 290
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4IV	ACGT	1 cut(s)	216
HpyF10VI	GCNNNNNNNGC	1 cut(s)	66
HpySE526I	ACGT	1 cut(s)	216
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	1 cut(s)	117
Kzo9I	GATC	2 cut(s)	312, 328
LmnI	GCTCC	2 cut(s)	9, 82
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	3 cut(s)	138, 252, 278
MalI	GATC	2 cut(s)	314, 330
MboI	GATC	2 cut(s)	312, 328
MflI	RGATCY	1 cut(s)	328
MluCI	AATT	1 cut(s)	94
MlyI	GAGTC	1 cut(s)	175
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	8 cut(s)	94, 140, 143, 169, 217, 226, 243, 269
MseI	TTAA	1 cut(s)	93
MspI	CCGG	3 cut(s)	24, 30, 241
MspR9I	CCNGG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	1 cut(s)	66
NdeII	GATC	2 cut(s)	312, 328
NlaIII	CATG	1 cut(s)	117
NlaIV	GGNNCC	2 cut(s)	22, 28
NmuCI	GTSAC	3 cut(s)	138, 252, 278
NspI	RCATGY	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	317
PfeI	GAWTC	1 cut(s)	33
PfoI	TCCNGGA	1 cut(s)	161
PinAI	ACCGGT	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	62
Ple19I	CGATCG	1 cut(s)	315
PleI	GAGTC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	174
Psp6I	CCWGG	1 cut(s)	161
PspEI	GGTNACC	2 cut(s)	252, 278
PspFI	CCCAGC	1 cut(s)	80
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	2 cut(s)	22, 28
PspPI	GGNCC	1 cut(s)	21
PsuI	RGATCY	1 cut(s)	328
PvuI	CGATCG	1 cut(s)	315
SalI	GTCGAC	2 cut(s)	119, 187
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	1 cut(s)	61
Sau3AI	GATC	2 cut(s)	312, 328
Sau96I	GGNCC	1 cut(s)	21
SchI	GAGTC	1 cut(s)	175
ScrFI	CCNGG	1 cut(s)	163
SetI	ASST	9 cut(s)	71, 86, 155, 200, 219, 254, 274, 280, 341
SfaNI	GCATC	1 cut(s)	307
SgrDI	CGTCGACG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	21
Sse9I	AATT	1 cut(s)	94
SsiI	CCGC	2 cut(s)	60, 192
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	144
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	4 cut(s)	99, 120, 188, 315
TasI	AATT	1 cut(s)	94
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	33
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TseFI	GTSAC	3 cut(s)	138, 252, 278
Tsp45I	GTSAC	3 cut(s)	138, 252, 278
TspGWI	ACGGA	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	21
XbaI	TCTAGA	1 cut(s)	220
XceI	RCATGY	1 cut(s)	117
XmiI	GTMKAC	2 cut(s)	120, 188
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.