Rroxscaffold_7G00170760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0011527
Physical Location & Seq
Forward (+)
11123707 .. 11124447
741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170760.1

Sequence Viewer

Length: 741 bp
ATGTGGAACGACAACGGGAACGTATCGCCGACGGGAAACAATCTGAAGGAGAAGCGTCACCGATCGATGATGTGCATGCCGGTGTGTTTCTCCAGCTCCACGCATCCTTTTGACGTTTTGGACGACGAGGACTACATCAGGACTCCGCGGTCGCCGGTGATGCCGGAGATCAGGGACCGGTGCCGGAATCTCATTAACAGAATCGGAGGAGGGAGGCGCAGGAGGGCGTCGTCGGCAGACTTCAGCTACGACGCTTCCAGCTACGCTCTCAATTTCGAGGACGACACCACACGCGCCGACGACATTCTCTTCCGGTCGCGGCTGCCGTCCTCCACCTCCGGGAGCCTGACCCCGCCGGAGAAGTCGACCACGAGCCAGCACATTCTGGACGACGTTCTGGAGGAAGATGAGGACAACCGGAGCTGGATTAGAAACCAAATGAGGCGGTCGCAGCCTGAGGACAAGGAGAAGAGTACGAAGAGCCGAAACATGGTATCGAGAATCGGACTGCGGGGACGGAACCGCCACTCGTCCACGTCGGCCGACTTCAGCTACGAGCCGTCCAGCTACGCGCTCAATTTCGAAGACGATAGCAGCAAAGCCGACGAGCTTGGCCCTGGCAATGGATTCATGGCGCGTTTGCCTCACTCGCCTTTGCCGTCGGTTCAGAGTTCGGCATCACCGCCGCTGCCGCCTGCAAAGTGTTCGGCGGTGCGCCCAGAGATTGCTGCCTTTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

27.61

Weight (kDa)

6.53

Isoelectric Point (pI)

82.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 148
AccB1I GGYRCC 1 cut(s) 180
AccI GTMKAC 1 cut(s) 365
AccII CGCG 5 cut(s) 148, 294, 319, 572, 637
AcoI YGGCCR 1 cut(s) 540
AcuI CTGAAG 3 cut(s) 65, 226, 532
AcyI GRCGYC 1 cut(s) 227
AfaI GTAC 1 cut(s) 475
AfiI CCNNNNNNNGG 3 cut(s) 339, 490, 623
AgeI ACCGGT 1 cut(s) 177
AjiI CACGTC 1 cut(s) 537
AjnI CCWGG 1 cut(s) 616
AluBI AGCT 7 cut(s) 96, 246, 261, 423, 552, 567, 610
AluI AGCT 7 cut(s) 96, 246, 261, 423, 552, 567, 610
AoxI GGCC 2 cut(s) 540, 613
ApeKI GCWGC 5 cut(s) 322, 451, 594, 688, 728
AsiGI ACCGGT 1 cut(s) 177
AspLEI GCGC 5 cut(s) 219, 296, 574, 637, 717
AspS9I GGNCC 2 cut(s) 175, 614
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 3 cut(s) 50, 169, 672
AsuII TTCGAA 1 cut(s) 582
AvaII GGWCC 1 cut(s) 175
AxyI CCTNAGG 1 cut(s) 456
BanI GGYRCC 1 cut(s) 180
BauI CACGAG 1 cut(s) 370
BbsI GAAGAC 1 cut(s) 591
BbvI GCAGC 5 cut(s) 309, 463, 606, 675, 715
BceAI ACGGC 3 cut(s) 310, 544, 643
BcgI CGANNNNNNTGC 2 cut(s) 687, 721
BciT130I CCWGG 1 cut(s) 618
BcnI CCSGG 1 cut(s) 340
BisI GCNGC 8 cut(s) 320, 323, 452, 595, 686, 689, 692, 729
BlsI GCNGC 8 cut(s) 321, 324, 453, 596, 687, 690, 693, 730
Bme1390I CCNGG 2 cut(s) 340, 618
Bme18I GGWCC 1 cut(s) 175
BmgBI CACGTC 1 cut(s) 537
BmgT120I GGNCC 2 cut(s) 175, 614
BmiI GGNNCC 4 cut(s) 176, 182, 344, 521
BmrFI CCNGG 2 cut(s) 340, 618
BmsI GCATC 3 cut(s) 112, 150, 686
BpiI GAAGAC 1 cut(s) 591
BpmI CTGGAG 2 cut(s) 76, 419
Bpu14I TTCGAA 1 cut(s) 582
BpuMI CCSGG 1 cut(s) 340
Bsa29I ATCGAT 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 227
BsaJI CCNNGG 2 cut(s) 146, 616
BsaWI WCCGGW 3 cut(s) 177, 312, 417
Bsc4I CCNNNNNNNGG 3 cut(s) 339, 490, 623
Bse118I RCCGGY 3 cut(s) 79, 154, 177
Bse21I CCTNAGG 1 cut(s) 456
Bse3DI GCAATG 1 cut(s) 628
BseBI CCWGG 1 cut(s) 618
BseCI ATCGAT 1 cut(s) 65
BseDI CCNNGG 2 cut(s) 146, 616
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 3 cut(s) 339, 490, 623
BseMI GCAATG 1 cut(s) 628
BseMII CTCAG 1 cut(s) 447
BseRI GAGGAG 1 cut(s) 222
BseX3I CGGCCG 1 cut(s) 540
BseXI GCAGC 5 cut(s) 309, 463, 606, 675, 715
Bsh1236I CGCG 5 cut(s) 148, 294, 319, 572, 637
Bsh1285I CGRYCG 5 cut(s) 65, 152, 317, 449, 543
BshFI GGCC 2 cut(s) 542, 615
BshNI GGYRCC 1 cut(s) 180
BshTI ACCGGT 1 cut(s) 177
BshVI ATCGAT 1 cut(s) 65
BsiEI CGRYCG 5 cut(s) 65, 152, 317, 449, 543
BsiSI CCGG 9 cut(s) 80, 155, 164, 178, 184, 313, 339, 356, 418
BslFI GGGAC 2 cut(s) 188, 528
BslI CCNNNNNNNGG 3 cut(s) 339, 490, 623
BsmFI GGGAC 2 cut(s) 188, 528
BsnI GGCC 2 cut(s) 542, 615
Bsp119I TTCGAA 1 cut(s) 582
Bsp143I GATC 2 cut(s) 62, 168
BspANI GGCC 2 cut(s) 542, 615
BspCNI CTCAG 1 cut(s) 448
BspDI ATCGAT 1 cut(s) 65
BspFNI CGCG 5 cut(s) 148, 294, 319, 572, 637
BspLI GGNNCC 4 cut(s) 176, 182, 344, 521
BspQI GCTCTTC 1 cut(s) 473
BspT104I TTCGAA 1 cut(s) 582
BspT107I GGYRCC 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 628
BsrFI RCCGGY 3 cut(s) 79, 154, 177
BssAI RCCGGY 3 cut(s) 79, 154, 177
BssECI CCNNGG 2 cut(s) 146, 616
BssMI GATC 2 cut(s) 62, 168
BssNI GRCGYC 1 cut(s) 227
BssSI CACGAG 1 cut(s) 370
Bst2BI CACGAG 1 cut(s) 370
Bst2UI CCWGG 1 cut(s) 618
Bst6I CTCTTC 3 cut(s) 314, 464, 473
BstACI GRCGYC 1 cut(s) 227
BstBI TTCGAA 1 cut(s) 582
BstC8I GCNNGC 3 cut(s) 77, 377, 696
BstDEI CTNAG 1 cut(s) 456
BstDSI CCRYGG 1 cut(s) 146
BstF5I GGATG 1 cut(s) 103
BstFNI CGCG 5 cut(s) 148, 294, 319, 572, 637
BstHHI GCGC 5 cut(s) 219, 296, 574, 637, 717
BstKTI GATC 2 cut(s) 65, 171
BstMBI GATC 2 cut(s) 62, 168
BstMCI CGRYCG 5 cut(s) 65, 152, 317, 449, 543
BstMWI GCNNNNNNNGC 5 cut(s) 160, 233, 451, 649, 691
BstNI CCWGG 1 cut(s) 618
BstNSI RCATGY 1 cut(s) 79
BstSCI CCNGG 2 cut(s) 338, 616
BstUI CGCG 5 cut(s) 148, 294, 319, 572, 637
BstV1I GCAGC 5 cut(s) 309, 463, 606, 675, 715
BstV2I GAAGAC 1 cut(s) 591
BstZI CGGCCG 1 cut(s) 540
Bsu15I ATCGAT 1 cut(s) 65
Bsu36I CCTNAGG 1 cut(s) 456
BsuRI GGCC 2 cut(s) 542, 615
BsuTUI ATCGAT 1 cut(s) 65
BtgI CCRYGG 1 cut(s) 146
BtrI CACGTC 1 cut(s) 537
BtsCI GGATG 1 cut(s) 103
Cac8I GCNNGC 3 cut(s) 77, 377, 696
CfoI GCGC 5 cut(s) 219, 296, 574, 637, 717
Cfr10I RCCGGY 3 cut(s) 79, 154, 177
Cfr13I GGNCC 2 cut(s) 175, 614
Cfr42I CCGCGG 1 cut(s) 149
ClaI ATCGAT 1 cut(s) 65
CseI GACGC 3 cut(s) 44, 216, 260
Csp6I GTAC 1 cut(s) 474
CspAI ACCGGT 1 cut(s) 177
CviAII CATG 3 cut(s) 76, 490, 631
CviQI GTAC 1 cut(s) 474
DdeI CTNAG 1 cut(s) 456
DpnI GATC 2 cut(s) 64, 170
DpnII GATC 2 cut(s) 62, 168
DrdI GACNNNNNNGTC 1 cut(s) 148
DseDI GACNNNNNNGTC 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 540
EagI CGGCCG 1 cut(s) 540
Eam1104I CTCTTC 3 cut(s) 314, 464, 473
EarI CTCTTC 3 cut(s) 314, 464, 473
EclXI CGGCCG 1 cut(s) 540
Eco47I GGWCC 1 cut(s) 175
Eco52I CGGCCG 1 cut(s) 540
Eco57I CTGAAG 3 cut(s) 65, 226, 532
Eco81I CCTNAGG 1 cut(s) 456
EcoRII CCWGG 1 cut(s) 616
FaeI CATG 3 cut(s) 79, 493, 634
FaiI YATR 3 cut(s) 77, 491, 632
FaqI GGGAC 2 cut(s) 188, 528
FatI CATG 3 cut(s) 75, 489, 630
FauI CCCGC 2 cut(s) 360, 504
FblI GTMKAC 1 cut(s) 365
Fnu4HI GCNGC 8 cut(s) 320, 323, 452, 595, 686, 689, 692, 729
FokI GGATG 1 cut(s) 90
Fsp4HI GCNGC 8 cut(s) 320, 323, 452, 595, 686, 689, 692, 729
GlaI GCGC 5 cut(s) 218, 295, 573, 636, 716
GluI GCNGC 8 cut(s) 320, 323, 452, 595, 686, 689, 692, 729
GsuI CTGGAG 2 cut(s) 76, 419
HaeIII GGCC 2 cut(s) 542, 615
HapII CCGG 9 cut(s) 80, 155, 164, 178, 184, 313, 339, 356, 418
HgaI GACGC 3 cut(s) 44, 216, 260
HhaI GCGC 5 cut(s) 219, 296, 574, 637, 717
Hin1I GRCGYC 1 cut(s) 227
Hin1II CATG 3 cut(s) 79, 493, 634
Hin6I GCGC 5 cut(s) 217, 294, 572, 635, 715
HinP1I GCGC 5 cut(s) 217, 294, 572, 635, 715
HincII GTYRAC 1 cut(s) 366
HindII GTYRAC 1 cut(s) 366
HinfI GANTC 5 cut(s) 142, 187, 201, 501, 627
HpaII CCGG 9 cut(s) 80, 155, 164, 178, 184, 313, 339, 356, 418
HphI GGTGA 3 cut(s) 50, 169, 672
Hpy166II GTNNAC 2 cut(s) 366, 534
Hpy188I TCNGA 4 cut(s) 45, 206, 506, 669
Hpy188III TCNNGA 4 cut(s) 139, 386, 398, 498
Hpy8I GTNNAC 2 cut(s) 366, 534
HpyAV CCTTC 1 cut(s) 40
HpyCH4IV ACGT 4 cut(s) 21, 114, 393, 536
HpyCH4V TGCA 2 cut(s) 75, 698
HpyF10VI GCNNNNNNNGC 5 cut(s) 160, 233, 451, 649, 691
HpyF3I CTNAG 1 cut(s) 456
HpySE526I ACGT 4 cut(s) 21, 114, 393, 536
Hsp92I GRCGYC 1 cut(s) 227
Hsp92II CATG 3 cut(s) 79, 493, 634
HspAI GCGC 5 cut(s) 217, 294, 572, 635, 715
KspI CCGCGG 1 cut(s) 149
Kzo9I GATC 2 cut(s) 62, 168
LguI GCTCTTC 1 cut(s) 473
LmnI GCTCC 3 cut(s) 101, 342, 420
Lsp1109I GCAGC 5 cut(s) 309, 463, 606, 675, 715
LweI GCATC 3 cut(s) 112, 150, 686
MaeII ACGT 4 cut(s) 21, 114, 393, 536
MaeIII GTNAC 1 cut(s) 56
MalI GATC 2 cut(s) 64, 170
MboI GATC 2 cut(s) 62, 168
MboII GAAGA 5 cut(s) 301, 416, 481, 490, 596
MluCI AATT 2 cut(s) 271, 577
MlyI GAGTC 1 cut(s) 136
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 80
MspA1I CMGCKG 2 cut(s) 148, 688
MspI CCGG 9 cut(s) 80, 155, 164, 178, 184, 313, 339, 356, 418
MspR9I CCNGG 2 cut(s) 340, 618
MvaI CCWGG 1 cut(s) 618
MvnI CGCG 5 cut(s) 148, 294, 319, 572, 637
MwoI GCNNNNNNNGC 5 cut(s) 160, 233, 451, 649, 691
NciI CCSGG 1 cut(s) 340
NdeII GATC 2 cut(s) 62, 168
NlaIII CATG 3 cut(s) 79, 493, 634
NlaIV GGNNCC 4 cut(s) 176, 182, 344, 521
NmuCI GTSAC 1 cut(s) 56
NspI RCATGY 1 cut(s) 79
NspV TTCGAA 1 cut(s) 582
PaeI GCATGC 1 cut(s) 79
PciSI GCTCTTC 1 cut(s) 473
PcsI WCGNNNNNNNCGW 3 cut(s) 120, 323, 656
PfeI GAWTC 4 cut(s) 187, 201, 501, 627
PfoI TCCNGGA 1 cut(s) 338
PinAI ACCGGT 1 cut(s) 177
PkrI GCNGC 8 cut(s) 321, 324, 453, 596, 687, 690, 693, 730
Ple19I CGATCG 1 cut(s) 65
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 616
PspGI CCWGG 1 cut(s) 616
PspN4I GGNNCC 4 cut(s) 176, 182, 344, 521
PspPI GGNCC 2 cut(s) 175, 614
PvuI CGATCG 1 cut(s) 65
RsaI GTAC 1 cut(s) 475
RsaNI GTAC 1 cut(s) 474
RseI CAYNNNNRTG 1 cut(s) 80
SacII CCGCGG 1 cut(s) 149
SalI GTCGAC 1 cut(s) 364
SapI GCTCTTC 1 cut(s) 473
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 8 cut(s) 320, 323, 452, 595, 686, 689, 692, 729
Sau3AI GATC 2 cut(s) 62, 168
Sau96I GGNCC 2 cut(s) 175, 614
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 2 cut(s) 340, 618
SfaNI GCATC 3 cut(s) 112, 150, 686
Sfr303I CCGCGG 1 cut(s) 149
SfuI TTCGAA 1 cut(s) 582
SgrAI CRCCGGYG 1 cut(s) 154
SgrBI CCGCGG 1 cut(s) 149
SinI GGWCC 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 80
SphI GCATGC 1 cut(s) 79
Sse9I AATT 2 cut(s) 271, 577
StyD4I CCNGG 2 cut(s) 338, 616
TaiI ACGT 4 cut(s) 24, 117, 396, 539
TaqI TCGA 5 cut(s) 65, 276, 365, 497, 582
TasI AATT 2 cut(s) 271, 577
TauI GCSGC 3 cut(s) 322, 688, 694
TfiI GAWTC 4 cut(s) 187, 201, 501, 627
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 5 cut(s) 322, 451, 594, 688, 728
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 619
TspGWI ACGGA 1 cut(s) 532
VpaK11BI GGWCC 1 cut(s) 175
XceI RCATGY 1 cut(s) 79
XmiI GTMKAC 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.