Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0011527

Physical Location & Seq

Genomic Coordinates Forward (+)

11919260 .. 11920195

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g13280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGCCGCTTCCCCACCCCCACCCGCGCACCCCACCTCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCACCTCAACCTATAAGTACGCCTCCACCCGCCACCTCCCCTCTCCATCAACAACCAAACTTTTAGAGGCCTGTTTGTTTCTCGAGAAAATAAAAAGAAGGAAAATACTCCAAACTCCAATCCTATCGATGCTGAACGAGGAACTCCGTTCTCAGTCGTCGACGTCGCCTCTCCACCACCACAAGTGCCACTCCCGATCAATCTGCCTCCCCGCCTGCTTCTCCAGCATGAGCACTCACCCCTTCGACGTTCTCGACAACGATGCCGACCACTACCACAACTGTAACAGCCAGAGGGCCCGCACACCTCCGCCGAGGTCGCCGCTGCCGGAGATCAAAGACCGCTGCATGCACCTCATATCAAAGATCGGCGGCGGGAGAGTACGGCGCCGCAACTCCTCCGCCGACTTTAGCTATGATCCGTCCAGCTACGCCCTGAACTTCGAGGACGACACCAGCAAGGCCGAAGATCAGCTCCTCGTCTACGGCTTCTCGGCTCGGCTCTCGGCATCGTCCATCCCGACGACGCCGCTCAAGAAGAAGATGAGCCCGCTCGACGAAATTTTGGAGAACGAGGAAGAGTTCGCTGCTGCGCCGGCTGATAAGGATAAGGAGGCCAAGAGCCGAGCGAACGGCGGCGCCGCTCAGAGGAGGCGGGGTAGGAGCCGGCACTCATTGGCTTCGGCCGACTTCGGCTACGAGCCGTCGAGCTACGCCAGGGATTTCGAGGACGACGTGAACCGAGCTGACGAGATTATCTCCCTCAGAAGGTTCGGGGGGTTGCTGGCGCAGCCGAAGCAGAGCTTGACGACGGCGCCTCCGCCTGCCAAGTGTTCGCCGTTGCGTCCGGAGATTGCTGCGTTTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

312

Amino Acids

34.53

Weight (kDa)

9.13

Isoelectric Point (pI)

92.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011527)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g28320
prunus_persica	Prupe.1G486000_v2.0.a1
pyrus_communis	pycom08g13280 pycom15g11770
rosa_laevigata	RLG00000011619 RLG00000018407
rosa_multiflora	Rmu_co8401359.1_g000001 Rmu_sc0013249.1_g000003
rosa_roxburghii	Rroxscaffold_7G00170760
rosa_samantha	Rh1AG304200 Rh1CG072500 Rh1DG077400 Rh4DG233900 Rh6AG381200 Rh6BG389400 Rh6CG394600 Rh6DG381300 Rh7AG417200 Rh7BG387500
rosa_wichuraiana	Rw6G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	233
AccB1I	GGYRCC	3 cut(s)	453, 704, 880
AccBSI	CCGCTC	3 cut(s)	598, 619, 710
AccI	GTMKAC	2 cut(s)	227, 549
AccII	CGCG	1 cut(s)	25
AccIII	TCCGGA	1 cut(s)	913
AclWI	GGATC	1 cut(s)	479
AcoI	YGGCCR	1 cut(s)	750
AcsI	RAATTY	1 cut(s)	627
AcyI	GRCGYC	5 cut(s)	230, 454, 593, 705, 881
AfaI	GTAC	2 cut(s)	86, 450
AfiI	CCNNNNNNNGG	2 cut(s)	714, 834
AjiI	CACGTC	1 cut(s)	802
AjnI	CCWGG	1 cut(s)	782
AluBI	AGCT	7 cut(s)	480, 495, 541, 777, 812, 870, 933
AluI	AGCT	7 cut(s)	480, 495, 541, 777, 812, 870, 933
Alw21I	GWGCWC	1 cut(s)	302
AlwI	GGATC	1 cut(s)	479
Ama87I	CYCGRG	1 cut(s)	149
Aor13HI	TCCGGA	1 cut(s)	913
AoxI	GGCC	5 cut(s)	135, 363, 528, 681, 750
ApaI	GGGCCC	1 cut(s)	367
ApeKI	GCWGC	6 cut(s)	391, 411, 653, 656, 856, 923
ApoI	RAATTY	1 cut(s)	627
AspLEI	GCGC	6 cut(s)	27, 456, 661, 707, 856, 883
AspS9I	GGNCC	2 cut(s)	363, 364
AsuHPI	GGTGA	1 cut(s)	296
AvaI	CYCGRG	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	367
BanI	GGYRCC	3 cut(s)	453, 704, 880
BanII	GRGCYC	2 cut(s)	367, 617
Bbv12I	GWGCWC	1 cut(s)	302
BbvI	GCAGC	6 cut(s)	378, 398, 640, 643, 868, 910
BccI	CCATC	2 cut(s)	121, 590
BceAI	ACGGC	6 cut(s)	467, 568, 715, 754, 889, 894
BcgI	CGANNNNNNTGC	4 cut(s)	252, 286, 311, 345
BciT130I	CCWGG	1 cut(s)	784
BfoI	RGCGCY	3 cut(s)	457, 708, 884
Bme1390I	CCNGG	1 cut(s)	784
BmeT110I	CYCGRG	1 cut(s)	149
BmgBI	CACGTC	1 cut(s)	802
BmgT120I	GGNCC	2 cut(s)	363, 364
BmiI	GGNNCC	5 cut(s)	365, 455, 706, 731, 882
BmrFI	CCNGG	1 cut(s)	784
BmsI	GCATC	3 cut(s)	186, 319, 584
BplI	GAGNNNNNCTC	2 cut(s)	809, 841
BpmI	CTGGAG	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	584
Bsa29I	ATCGAT	1 cut(s)	194
BsaHI	GRCGYC	5 cut(s)	230, 454, 593, 705, 881
BsaJI	CCNNGG	2 cut(s)	380, 783
BsaWI	WCCGGW	1 cut(s)	913
BsaXI	ACNNNNNCTCC	6 cut(s)	19, 49, 709, 739, 868, 898
Bsc4I	CCNNNNNNNGG	2 cut(s)	714, 834
Bse118I	RCCGGY	2 cut(s)	661, 732
BseAI	TCCGGA	1 cut(s)	913
BseBI	CCWGG	1 cut(s)	784
BseCI	ATCGAT	1 cut(s)	194
BseDI	CCNNGG	2 cut(s)	380, 783
BseGI	GGATG	1 cut(s)	582
BseLI	CCNNNNNNNGG	2 cut(s)	714, 834
BseMII	CTCAG	3 cut(s)	233, 725, 844
BseRI	GAGGAG	3 cut(s)	454, 533, 730
BseSI	GKGCMC	1 cut(s)	367
BseX3I	CGGCCG	1 cut(s)	750
BseXI	GCAGC	6 cut(s)	378, 398, 640, 643, 868, 910
Bsh1236I	CGCG	1 cut(s)	25
Bsh1285I	CGRYCG	1 cut(s)	753
BshFI	GGCC	5 cut(s)	137, 365, 530, 683, 752
BshNI	GGYRCC	3 cut(s)	453, 704, 880
BshVI	ATCGAT	1 cut(s)	194
BsiEI	CGRYCG	1 cut(s)	753
BsiHKAI	GWGCWC	1 cut(s)	302
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	4 cut(s)	395, 662, 733, 914
BslI	CCNNNNNNNGG	2 cut(s)	714, 834
BsnI	GGCC	5 cut(s)	137, 365, 530, 683, 752
BsoBI	CYCGRG	1 cut(s)	149
Bsp120I	GGGCCC	1 cut(s)	363
Bsp1286I	GDGCHC	3 cut(s)	302, 367, 617
Bsp13I	TCCGGA	1 cut(s)	913
Bsp143I	GATC	5 cut(s)	263, 399, 432, 484, 535
BspANI	GGCC	5 cut(s)	137, 365, 530, 683, 752
BspCNI	CTCAG	3 cut(s)	232, 724, 843
BspDI	ATCGAT	1 cut(s)	194
BspEI	TCCGGA	1 cut(s)	913
BspFNI	CGCG	1 cut(s)	25
BspLI	GGNNCC	5 cut(s)	365, 455, 706, 731, 882
BspPI	GGATC	1 cut(s)	479
BspT107I	GGYRCC	3 cut(s)	453, 704, 880
BsrBI	CCGCTC	3 cut(s)	598, 619, 710
BsrFI	RCCGGY	2 cut(s)	661, 732
BssAI	RCCGGY	2 cut(s)	661, 732
BssECI	CCNNGG	2 cut(s)	380, 783
BssMI	GATC	5 cut(s)	263, 399, 432, 484, 535
BssNI	GRCGYC	5 cut(s)	230, 454, 593, 705, 881
Bst2UI	CCWGG	1 cut(s)	784
Bst4CI	ACNGT	1 cut(s)	350
Bst6I	CTCTTC	1 cut(s)	639
BstACI	GRCGYC	5 cut(s)	230, 454, 593, 705, 881
BstC8I	GCNNGC	8 cut(s)	283, 367, 416, 617, 663, 734, 852, 891
BstDEI	CTNAG	3 cut(s)	219, 711, 830
BstF5I	GGATG	1 cut(s)	582
BstFNI	CGCG	1 cut(s)	25
BstH2I	RGCGCY	3 cut(s)	457, 708, 884
BstHHI	GCGC	6 cut(s)	27, 456, 661, 707, 856, 883
BstKTI	GATC	5 cut(s)	266, 402, 435, 487, 538
BstMBI	GATC	5 cut(s)	263, 399, 432, 484, 535
BstMCI	CGRYCG	1 cut(s)	753
BstMWI	GCNNNNNNNGC	5 cut(s)	291, 385, 662, 856, 862
BstNI	CCWGG	1 cut(s)	784
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	1 cut(s)	782
BstSLI	GKGCMC	1 cut(s)	367
BstUI	CGCG	1 cut(s)	25
BstV1I	GCAGC	6 cut(s)	378, 398, 640, 643, 868, 910
BstZI	CGGCCG	1 cut(s)	750
Bsu15I	ATCGAT	1 cut(s)	194
BsuRI	GGCC	5 cut(s)	137, 365, 530, 683, 752
BsuTUI	ATCGAT	1 cut(s)	194
BtrI	CACGTC	1 cut(s)	802
BtsCI	GGATG	1 cut(s)	582
Cac8I	GCNNGC	8 cut(s)	283, 367, 416, 617, 663, 734, 852, 891
CfoI	GCGC	6 cut(s)	27, 456, 661, 707, 856, 883
Cfr10I	RCCGGY	2 cut(s)	661, 732
Cfr13I	GGNCC	2 cut(s)	363, 364
ClaI	ATCGAT	1 cut(s)	194
CseI	GACGC	2 cut(s)	601, 899
Csp6I	GTAC	2 cut(s)	85, 449
CviAII	CATG	2 cut(s)	295, 415
CviQI	GTAC	2 cut(s)	85, 449
DdeI	CTNAG	3 cut(s)	219, 711, 830
DinI	GGCGCC	3 cut(s)	455, 706, 882
DpnI	GATC	5 cut(s)	265, 401, 434, 486, 537
DpnII	GATC	5 cut(s)	263, 399, 432, 484, 535
EaeI	YGGCCR	1 cut(s)	750
EagI	CGGCCG	1 cut(s)	750
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
EciI	GGCGGA	3 cut(s)	366, 457, 876
EclXI	CGGCCG	1 cut(s)	750
Eco147I	AGGCCT	1 cut(s)	137
Eco24I	GRGCYC	2 cut(s)	367, 617
Eco52I	CGGCCG	1 cut(s)	750
Eco88I	CYCGRG	1 cut(s)	149
EcoO109I	RGGNCCY	1 cut(s)	363
EcoRII	CCWGG	1 cut(s)	782
EcoT38I	GRGCYC	2 cut(s)	367, 617
EgeI	GGCGCC	3 cut(s)	455, 706, 882
EheI	GGCGCC	3 cut(s)	455, 706, 882
FaeI	CATG	2 cut(s)	298, 418
FaiI	YATR	5 cut(s)	81, 296, 416, 425, 483
FalI	AAGNNNNNCTT	2 cut(s)	854, 886
FatI	CATG	2 cut(s)	294, 414
FauI	CCCGC	7 cut(s)	30, 104, 286, 374, 434, 624, 714
FblI	GTMKAC	2 cut(s)	227, 549
FokI	GGATG	1 cut(s)	569
FriOI	GRGCYC	2 cut(s)	367, 617
GlaI	GCGC	6 cut(s)	26, 455, 660, 706, 855, 882
GsuI	CTGGAG	1 cut(s)	274
HaeII	RGCGCY	3 cut(s)	457, 708, 884
HaeIII	GGCC	5 cut(s)	137, 365, 530, 683, 752
HapII	CCGG	4 cut(s)	395, 662, 733, 914
HgaI	GACGC	2 cut(s)	601, 899
HhaI	GCGC	6 cut(s)	27, 456, 661, 707, 856, 883
Hin1I	GRCGYC	5 cut(s)	230, 454, 593, 705, 881
Hin1II	CATG	2 cut(s)	298, 418
Hin6I	GCGC	6 cut(s)	25, 454, 659, 705, 854, 881
HinP1I	GCGC	6 cut(s)	25, 454, 659, 705, 854, 881
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HpaII	CCGG	4 cut(s)	395, 662, 733, 914
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	3 cut(s)	228, 550, 805
Hpy188I	TCNGA	2 cut(s)	714, 833
Hpy188III	TCNNGA	7 cut(s)	149, 151, 261, 320, 586, 601, 914
Hpy8I	GTNNAC	3 cut(s)	228, 550, 805
HpyAV	CCTTC	3 cut(s)	159, 319, 828
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4IV	ACGT	3 cut(s)	230, 315, 801
HpyCH4V	TGCA	2 cut(s)	414, 418
HpyF10VI	GCNNNNNNNGC	5 cut(s)	291, 385, 662, 856, 862
HpyF3I	CTNAG	3 cut(s)	219, 711, 830
HpySE526I	ACGT	3 cut(s)	230, 315, 801
Hsp92I	GRCGYC	5 cut(s)	230, 454, 593, 705, 881
Hsp92II	CATG	2 cut(s)	298, 418
HspAI	GCGC	6 cut(s)	25, 454, 659, 705, 854, 881
KasI	GGCGCC	3 cut(s)	453, 704, 880
Kpn2I	TCCGGA	1 cut(s)	913
KroI	GCCGGC	2 cut(s)	661, 732
KroNI	GCCGGC	2 cut(s)	663, 734
Kzo9I	GATC	5 cut(s)	263, 399, 432, 484, 535
LmnI	GCTCC	2 cut(s)	546, 729
Lsp1109I	GCAGC	6 cut(s)	378, 398, 640, 643, 868, 910
LweI	GCATC	3 cut(s)	186, 319, 584
MaeII	ACGT	3 cut(s)	230, 315, 801
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	5 cut(s)	265, 401, 434, 486, 537
MbiI	CCGCTC	3 cut(s)	598, 619, 710
MboI	GATC	5 cut(s)	263, 399, 432, 484, 535
MboII	GAAGA	4 cut(s)	545, 616, 619, 656
MhlI	GDGCHC	3 cut(s)	302, 367, 617
MluCI	AATT	1 cut(s)	627
Mly113I	GGCGCC	3 cut(s)	454, 705, 881
MroI	TCCGGA	1 cut(s)	913
MroNI	GCCGGC	2 cut(s)	661, 732
MspA1I	CMGCKG	2 cut(s)	391, 411
MspI	CCGG	4 cut(s)	395, 662, 733, 914
MspR9I	CCNGG	1 cut(s)	784
MvaI	CCWGG	1 cut(s)	784
MvnI	CGCG	1 cut(s)	25
MwoI	GCNNNNNNNGC	5 cut(s)	291, 385, 662, 856, 862
NaeI	GCCGGC	2 cut(s)	663, 734
NarI	GGCGCC	3 cut(s)	454, 705, 881
NdeII	GATC	5 cut(s)	263, 399, 432, 484, 535
NgoMIV	GCCGGC	2 cut(s)	661, 732
NlaIII	CATG	2 cut(s)	298, 418
NlaIV	GGNNCC	5 cut(s)	365, 455, 706, 731, 882
NmeAIII	GCCGAG	5 cut(s)	405, 539, 544, 551, 716
NspI	RCATGY	1 cut(s)	418
PaeI	GCATGC	1 cut(s)	418
PaeR7I	CTCGAG	1 cut(s)	149
PceI	AGGCCT	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	3 cut(s)	318, 584, 798
PdiI	GCCGGC	2 cut(s)	663, 734
PluTI	GGCGCC	3 cut(s)	457, 708, 884
Psp6I	CCWGG	1 cut(s)	782
PspGI	CCWGG	1 cut(s)	782
PspN4I	GGNNCC	5 cut(s)	365, 455, 706, 731, 882
PspOMI	GGGCCC	1 cut(s)	363
PspPI	GGNCC	2 cut(s)	363, 364
RsaI	GTAC	2 cut(s)	86, 450
RsaNI	GTAC	2 cut(s)	85, 449
SalI	GTCGAC	1 cut(s)	226
Sau3AI	GATC	5 cut(s)	263, 399, 432, 484, 535
Sau96I	GGNCC	2 cut(s)	363, 364
ScrFI	CCNGG	1 cut(s)	784
SduI	GDGCHC	3 cut(s)	302, 367, 617
SfaNI	GCATC	3 cut(s)	186, 319, 584
SfoI	GGCGCC	3 cut(s)	455, 706, 882
Sfr274I	CTCGAG	1 cut(s)	149
SgrDI	CGTCGACG	1 cut(s)	226
SlaI	CTCGAG	1 cut(s)	149
SmlI	CTYRAG	2 cut(s)	149, 599
SmoI	CTYRAG	2 cut(s)	149, 599
SphI	GCATGC	1 cut(s)	418
Sse9I	AATT	1 cut(s)	627
SseBI	AGGCCT	1 cut(s)	137
SspDI	GGCGCC	3 cut(s)	453, 704, 880
StuI	AGGCCT	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	782
TaaI	ACNGT	1 cut(s)	350
TaiI	ACGT	3 cut(s)	233, 318, 804
TaqI	TCGA	9 cut(s)	150, 194, 227, 312, 321, 510, 621, 773, 792
TasI	AATT	1 cut(s)	627
TauI	GCSGC	7 cut(s)	7, 391, 441, 459, 598, 705, 710
TseI	GCWGC	6 cut(s)	391, 411, 653, 656, 856, 923
TspGWI	ACGGA	2 cut(s)	203, 477
XapI	RAATTY	1 cut(s)	627
XceI	RCATGY	1 cut(s)	418
XhoI	CTCGAG	1 cut(s)	149
XmiI	GTMKAC	2 cut(s)	227, 549
ZraI	GACGTC	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.