Rh7BG387500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0011527
Physical Location & Seq
Forward (+)
42195809 .. 42199539
3731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG387500.1

Sequence Viewer

Length: 354 bp
ATGGGACTTCAAGAGCTCAAAGCGAACCGAAAACAATGCTCACGAGATGTTCACATGGTTCGGAAAGCAGAAAAGCAGTGGGGATTCTGGAAATCAGGGACCGGTGCCAGAATCTCAATTTCAGAATCGGAGGACGGCGGCGTCAGCTACACGCTTAATTTGGAGGACGACTCCACACGCGTGGATGACATCCTCCTCCAGTCGCGGCTGCCGGTCTTCGCCTCCTGGAGTCTGACCCCGCCGGAGAAGTCGACCACAAGCCGACATATTCTGGATCACGTTCTAGAGGAAGATGAGGATAACCGGAGTTGGAGGTCACCGACGGAGAACAATCTGAAGGAGAAAGGGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.32

Weight (kDa)

5.62

Isoelectric Point (pI)

68.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 140
AccB1I GGYRCC 1 cut(s) 104
AccI GTMKAC 1 cut(s) 251
AccII CGCG 2 cut(s) 180, 205
AciI CCGC 3 cut(s) 138, 205, 239
AclWI GGATC 1 cut(s) 282
AcyI GRCGYC 1 cut(s) 141
AflIII ACRYGT 1 cut(s) 178
AgeI ACCGGT 1 cut(s) 101
AgsI TTSAA 1 cut(s) 11
AjnI CCWGG 1 cut(s) 224
AleI CACNNNNGTG 1 cut(s) 179
AluBI AGCT 2 cut(s) 16, 147
AluI AGCT 2 cut(s) 16, 147
Alw21I GWGCWC 1 cut(s) 18
AlwI GGATC 1 cut(s) 282
ApeKI GCWGC 1 cut(s) 208
AsiGI ACCGGT 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 99
AsuHPI GGTGA 1 cut(s) 309
AvaII GGWCC 1 cut(s) 99
BanI GGYRCC 1 cut(s) 104
BanII GRGCYC 1 cut(s) 18
BauI CACGAG 1 cut(s) 42
BbsI GAAGAC 1 cut(s) 208
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 195
BceAI ACGGC 1 cut(s) 151
BcgI CGANNNNNNTGC 2 cut(s) 18, 52
BciT130I CCWGG 1 cut(s) 226
BfaI CTAG 1 cut(s) 284
BisI GCNGC 3 cut(s) 139, 206, 209
BlsI GCNGC 3 cut(s) 140, 207, 210
Bme1390I CCNGG 1 cut(s) 226
Bme18I GGWCC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 99
BmiI GGNNCC 2 cut(s) 100, 106
BmrFI CCNGG 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 208
BplI GAGNNNNNCTC 2 cut(s) 155, 187
BpmI CTGGAG 2 cut(s) 182, 247
BsaHI GRCGYC 1 cut(s) 141
BsaWI WCCGGW 2 cut(s) 101, 303
Bse118I RCCGGY 2 cut(s) 101, 211
Bse1I ACTGG 1 cut(s) 199
BseBI CCWGG 1 cut(s) 226
BseGI GGATG 2 cut(s) 189, 190
BseNI ACTGG 1 cut(s) 199
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 195
Bsh1236I CGCG 2 cut(s) 180, 205
BshNI GGYRCC 1 cut(s) 104
BshTI ACCGGT 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 4 cut(s) 102, 212, 242, 304
BslFI GGGAC 2 cut(s) 18, 112
BsmFI GGGAC 2 cut(s) 18, 112
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 1 cut(s) 274
BspACI CCGC 3 cut(s) 138, 205, 239
BspFNI CGCG 2 cut(s) 180, 205
BspLI GGNNCC 2 cut(s) 100, 106
BspPI GGATC 1 cut(s) 282
BspT107I GGYRCC 1 cut(s) 104
BsrFI RCCGGY 2 cut(s) 101, 211
BsrI ACTGG 1 cut(s) 199
BssAI RCCGGY 2 cut(s) 101, 211
BssMI GATC 1 cut(s) 274
BssNI GRCGYC 1 cut(s) 141
BssSI CACGAG 1 cut(s) 42
Bst2BI CACGAG 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 226
BstACI GRCGYC 1 cut(s) 141
BstEII GGTNACC 1 cut(s) 315
BstF5I GGATG 2 cut(s) 189, 190
BstFNI CGCG 2 cut(s) 180, 205
BstKTI GATC 1 cut(s) 277
BstMBI GATC 1 cut(s) 274
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstNI CCWGG 1 cut(s) 226
BstPI GGTNACC 1 cut(s) 315
BstSCI CCNGG 1 cut(s) 224
BstUI CGCG 2 cut(s) 180, 205
BstV1I GCAGC 1 cut(s) 195
BstV2I GAAGAC 1 cut(s) 208
BstXI CCANNNNNNTGG 1 cut(s) 181
BtsCI GGATG 2 cut(s) 189, 190
BtsI GCAGTG 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 83
Cfr10I RCCGGY 2 cut(s) 101, 211
Cfr13I GGNCC 1 cut(s) 99
CseI GACGC 1 cut(s) 130
CspAI ACCGGT 1 cut(s) 101
CviAII CATG 1 cut(s) 55
CviJI RGCY 4 cut(s) 16, 147, 208, 261
CviKI_1 RGCY 4 cut(s) 16, 147, 208, 261
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
Ecl136II GAGCTC 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 99
Eco53kI GAGCTC 1 cut(s) 16
Eco91I GGTNACC 1 cut(s) 315
EcoICRI GAGCTC 1 cut(s) 16
EcoO65I GGTNACC 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 18
FaeI CATG 1 cut(s) 58
FaiI YATR 2 cut(s) 56, 267
FaqI GGGAC 2 cut(s) 18, 112
FatI CATG 1 cut(s) 54
FauI CCCGC 1 cut(s) 246
FblI GTMKAC 1 cut(s) 251
Fnu4HI GCNGC 3 cut(s) 139, 206, 209
FokI GGATG 2 cut(s) 176, 197
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 3 cut(s) 139, 206, 209
FspBI CTAG 1 cut(s) 284
GluI GCNGC 3 cut(s) 139, 206, 209
GsuI CTGGAG 2 cut(s) 182, 247
HapII CCGG 4 cut(s) 102, 212, 242, 304
HgaI GACGC 1 cut(s) 130
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 1 cut(s) 58
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 5 cut(s) 84, 111, 125, 170, 229
HpaII CCGG 4 cut(s) 102, 212, 242, 304
HphI GGTGA 1 cut(s) 309
Hpy166II GTNNAC 2 cut(s) 52, 252
Hpy188I TCNGA 5 cut(s) 63, 124, 130, 234, 336
Hpy188III TCNNGA 5 cut(s) 11, 42, 88, 272, 284
Hpy8I GTNNAC 2 cut(s) 52, 252
Hpy99I CGWCG 1 cut(s) 325
HpyAV CCTTC 1 cut(s) 331
HpyCH4IV ACGT 1 cut(s) 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpySE526I ACGT 1 cut(s) 279
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 1 cut(s) 58
Kzo9I GATC 1 cut(s) 274
Lsp1109I GCAGC 1 cut(s) 195
MaeI CTAG 1 cut(s) 284
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 315
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 2 cut(s) 208, 302
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 2 cut(s) 117, 157
MluI ACGCGT 1 cut(s) 178
MlyI GAGTC 2 cut(s) 164, 238
MmeI TCCRAC 1 cut(s) 290
MnlI CCTC 8 cut(s) 124, 157, 203, 206, 232, 280, 289, 306
MseI TTAA 1 cut(s) 156
MslI CAYNNNNRTG 1 cut(s) 179
MspI CCGG 4 cut(s) 102, 212, 242, 304
MspR9I CCNGG 1 cut(s) 226
MvaI CCWGG 1 cut(s) 226
MvnI CGCG 2 cut(s) 180, 205
MwoI GCNNNNNNNGC 1 cut(s) 144
NdeII GATC 1 cut(s) 274
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 2 cut(s) 100, 106
NmuCI GTSAC 1 cut(s) 315
OliI CACNNNNGTG 1 cut(s) 179
PfeI GAWTC 3 cut(s) 84, 111, 125
PfoI TCCNGGA 1 cut(s) 224
PinAI ACCGGT 1 cut(s) 101
PkrI GCNGC 3 cut(s) 140, 207, 210
PleI GAGTC 2 cut(s) 164, 237
PpsI GAGTC 2 cut(s) 164, 237
Psp124BI GAGCTC 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 224
PspEI GGTNACC 1 cut(s) 315
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 2 cut(s) 100, 106
PspPI GGNCC 1 cut(s) 99
RseI CAYNNNNRTG 1 cut(s) 179
SacI GAGCTC 1 cut(s) 18
SalI GTCGAC 1 cut(s) 250
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 3 cut(s) 139, 206, 209
Sau3AI GATC 1 cut(s) 274
Sau96I GGNCC 1 cut(s) 99
SchI GAGTC 2 cut(s) 164, 238
ScrFI CCNGG 1 cut(s) 226
SduI GDGCHC 1 cut(s) 18
SetI ASST 4 cut(s) 18, 149, 282, 317
SinI GGWCC 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 179
Sse9I AATT 2 cut(s) 117, 157
SsiI CCGC 3 cut(s) 138, 205, 239
SspMI CTAG 1 cut(s) 284
SstI GAGCTC 1 cut(s) 18
StyD4I CCNGG 1 cut(s) 224
TaiI ACGT 1 cut(s) 282
TaqI TCGA 1 cut(s) 251
TasI AATT 2 cut(s) 117, 157
TauI GCSGC 2 cut(s) 141, 208
TfiI GAWTC 3 cut(s) 84, 111, 125
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 1 cut(s) 83
TseFI GTSAC 1 cut(s) 315
TseI GCWGC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 315
TspGWI ACGGA 1 cut(s) 338
TspRI CASTG 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 99
XbaI TCTAGA 1 cut(s) 283
XmiI GTMKAC 1 cut(s) 251
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.