Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0011527

Physical Location & Seq

Genomic Coordinates Reverse (-)

14297663 .. 14298019

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG077400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGCGTCGAGGACATCCTCCTCCTTCGCGGCTGCCAGCCTTCGCCCCCTGGAGTCTAAACCAGCCGGAGAAGTCGACCACAAGCCGGCATATTCTGGACGACGTTCAAGAGGAAGATGAGGATAACCGGAGTTGGAGGTCACGGACGGAGAACAATCTGAAGGAGAAGCATCACCGATCGCTGTGCCGACGGATCTCCCGAGCTCAAATTGCGACACCACTATCCAAGACCCAAAGGTTAACTCGCTTGTGGAGAACCAGATGCTTCCGTTCAGGCTCGAAATCTACTCGCCGTTCGACGATCAGCTACTTCACCGGCGAGATCGTGAGGTCTGCAACTCATCGTGTCAGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

13.9

Weight (kDa)

11.54

Isoelectric Point (pI)

80.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011527)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g28320
prunus_persica	Prupe.1G486000_v2.0.a1
pyrus_communis	pycom08g13280 pycom15g11770
rosa_laevigata	RLG00000011619 RLG00000018407
rosa_multiflora	Rmu_co8401359.1_g000001 Rmu_sc0013249.1_g000003
rosa_roxburghii	Rroxscaffold_7G00170760
rosa_samantha	Rh1AG304200 Rh1CG072500 Rh1DG077400 Rh4DG233900 Rh6AG381200 Rh6BG389400 Rh6CG394600 Rh6DG381300 Rh7AG417200 Rh7BG387500
rosa_wichuraiana	Rw6G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	74
AccII	CGCG	1 cut(s)	28
AciI	CCGC	1 cut(s)	28
AclWI	GGATC	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	84
AgsI	TTSAA	1 cut(s)	107
AjnI	CCWGG	1 cut(s)	47
AluBI	AGCT	2 cut(s)	203, 306
AluI	AGCT	2 cut(s)	203, 306
Alw21I	GWGCWC	1 cut(s)	205
AlwI	GGATC	1 cut(s)	200
Ama87I	CYCGRG	1 cut(s)	198
ApeKI	GCWGC	1 cut(s)	31
AsuHPI	GGTGA	2 cut(s)	164, 304
AvaI	CYCGRG	1 cut(s)	198
BanII	GRGCYC	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	1 cut(s)	18
BceAI	ACGGC	1 cut(s)	276
BcgI	CGANNNNNNTGC	2 cut(s)	165, 199
BciT130I	CCWGG	1 cut(s)	49
BisI	GCNGC	2 cut(s)	29, 32
BlsI	GCNGC	2 cut(s)	30, 33
Bme1390I	CCNGG	1 cut(s)	49
BmeT110I	CYCGRG	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	49
BmsI	GCATC	2 cut(s)	178, 251
BpmI	CTGGAG	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse118I	RCCGGY	2 cut(s)	84, 314
BseBI	CCWGG	1 cut(s)	49
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseRI	GAGGAG	1 cut(s)	9
BseXI	GCAGC	1 cut(s)	18
Bsh1236I	CGCG	1 cut(s)	28
Bsh1285I	CGRYCG	1 cut(s)	179
BsiEI	CGRYCG	1 cut(s)	179
BsiHKAI	GWGCWC	1 cut(s)	205
BsiHKCI	CYCGRG	1 cut(s)	198
BsiSI	CCGG	4 cut(s)	65, 85, 127, 315
BslI	CCNNNNNNNGG	1 cut(s)	84
BsoBI	CYCGRG	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	4 cut(s)	176, 192, 300, 321
BspACI	CCGC	1 cut(s)	28
BspFNI	CGCG	1 cut(s)	28
BspPI	GGATC	1 cut(s)	200
BsrFI	RCCGGY	2 cut(s)	84, 314
BssAI	RCCGGY	2 cut(s)	84, 314
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	4 cut(s)	176, 192, 300, 321
Bst2UI	CCWGG	1 cut(s)	49
BstC8I	GCNNGC	2 cut(s)	36, 86
BstF5I	GGATG	1 cut(s)	13
BstFNI	CGCG	1 cut(s)	28
BstKTI	GATC	4 cut(s)	179, 195, 303, 324
BstMBI	GATC	4 cut(s)	176, 192, 300, 321
BstMCI	CGRYCG	1 cut(s)	179
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNI	CCWGG	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	47
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	13
Cac8I	GCNNGC	2 cut(s)	36, 86
Cfr10I	RCCGGY	2 cut(s)	84, 314
CviJI	RGCY	7 cut(s)	31, 38, 64, 84, 203, 276, 306
CviKI_1	RGCY	7 cut(s)	31, 38, 64, 84, 203, 276, 306
DpnI	GATC	4 cut(s)	178, 194, 302, 323
DpnII	GATC	4 cut(s)	176, 192, 300, 321
Ecl136II	GAGCTC	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	179
Eco88I	CYCGRG	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	205
FaiI	YATR	1 cut(s)	90
FblI	GTMKAC	1 cut(s)	74
Fnu4HI	GCNGC	2 cut(s)	29, 32
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	2 cut(s)	29, 32
GluI	GCNGC	2 cut(s)	29, 32
GsuI	CTGGAG	1 cut(s)	70
HapII	CCGG	4 cut(s)	65, 85, 127, 315
HincII	GTYRAC	2 cut(s)	75, 240
HindII	GTYRAC	2 cut(s)	75, 240
HinfI	GANTC	1 cut(s)	52
HpaI	GTTAAC	1 cut(s)	240
HpaII	CCGG	4 cut(s)	65, 85, 127, 315
HphI	GGTGA	2 cut(s)	164, 304
Hpy166II	GTNNAC	2 cut(s)	75, 240
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	4 cut(s)	95, 107, 198, 325
Hpy8I	GTNNAC	2 cut(s)	75, 240
Hpy99I	CGWCG	4 cut(s)	9, 104, 192, 301
HpyAV	CCTTC	3 cut(s)	33, 49, 154
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	1 cut(s)	335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpySE526I	ACGT	1 cut(s)	102
KroI	GCCGGC	1 cut(s)	84
KroNI	GCCGGC	1 cut(s)	86
KspAI	GTTAAC	1 cut(s)	240
Kzo9I	GATC	4 cut(s)	176, 192, 300, 321
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	2 cut(s)	178, 251
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	138
MalI	GATC	4 cut(s)	178, 194, 302, 323
MboI	GATC	4 cut(s)	176, 192, 300, 321
MboII	GAAGA	1 cut(s)	125
MflI	RGATCY	1 cut(s)	192
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	1 cut(s)	207
MlyI	GAGTC	1 cut(s)	61
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	6 cut(s)	27, 30, 103, 112, 129, 321
MroNI	GCCGGC	1 cut(s)	84
MseI	TTAA	1 cut(s)	239
MspI	CCGG	4 cut(s)	65, 85, 127, 315
MspR9I	CCNGG	1 cut(s)	49
MvaI	CCWGG	1 cut(s)	49
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	209
NaeI	GCCGGC	1 cut(s)	86
NdeII	GATC	4 cut(s)	176, 192, 300, 321
NgoMIV	GCCGGC	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	1 cut(s)	196
PdiI	GCCGGC	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	30, 33
Ple19I	CGATCG	1 cut(s)	179
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
Psp124BI	GAGCTC	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	192
PvuI	CGATCG	1 cut(s)	179
SacI	GAGCTC	1 cut(s)	205
SalI	GTCGAC	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	2 cut(s)	29, 32
Sau3AI	GATC	4 cut(s)	176, 192, 300, 321
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	49
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	6 cut(s)	105, 140, 205, 239, 308, 332
SfaNI	GCATC	2 cut(s)	178, 251
SgrAI	CRCCGGYG	1 cut(s)	314
Sse9I	AATT	1 cut(s)	207
SsiI	CCGC	1 cut(s)	28
SstI	GAGCTC	1 cut(s)	205
StyD4I	CCNGG	1 cut(s)	47
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	4 cut(s)	7, 74, 278, 296
TasI	AATT	1 cut(s)	207
TauI	GCSGC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TseFI	GTSAC	1 cut(s)	138
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	138
TspGWI	ACGGA	4 cut(s)	157, 161, 205, 257
XmiI	GTMKAC	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.