Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0011527

Physical Location & Seq

Genomic Coordinates Reverse (-)

56017163 .. 56019073

Gene Structure 1911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG417200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGACTACCAGGAAAAGAAGTGGGGATTCTGGAAATCAAGGACCGGTGTCGGAATCTCAATTTTAGAATCAGAGGACAACGGCGTAATCTACACGCTTAATTTGGAGGATGACTCCACACGAGTAGACGACATCCTCCTCCGGTCGAGGCTGCCGGCCTTCTCCTCCTGGAGTCTAAACCCGTCGGGGAAGTTGACCACAAGCCGACATATTCTGGACGACGTTCTAGAGGAAGATGAGGATAACCGGAGTTGGAAGTCACCGATGGAGAACAATGTGCCGACAGATCTCCCGAGCTCAAATTGCGACACCACTATCCAAGACCTGAAGGTTAACCCGCTTGTGGAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

13.34

Weight (kDa)

4.39

Isoelectric Point (pI)

58.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011527)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g28320
prunus_persica	Prupe.1G486000_v2.0.a1
pyrus_communis	pycom08g13280 pycom15g11770
rosa_laevigata	RLG00000011619 RLG00000018407
rosa_multiflora	Rmu_co8401359.1_g000001 Rmu_sc0013249.1_g000003
rosa_roxburghii	Rroxscaffold_7G00170760
rosa_samantha	Rh1AG304200 Rh1CG072500 Rh1DG077400 Rh4DG233900 Rh6AG381200 Rh6BG389400 Rh6CG394600 Rh6DG381300 Rh7AG417200 Rh7BG387500
rosa_wichuraiana	Rw6G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	126
AciI	CCGC	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgeI	ACCGGT	1 cut(s)	44
AjnI	CCWGG	2 cut(s)	9, 167
AluBI	AGCT	1 cut(s)	297
AluI	AGCT	1 cut(s)	297
Alw21I	GWGCWC	1 cut(s)	299
Ama87I	CYCGRG	1 cut(s)	292
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	1 cut(s)	151
AsiGI	ACCGGT	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	252
AvaI	CYCGRG	1 cut(s)	292
AvaII	GGWCC	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	299
BauI	CACGAG	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	1 cut(s)	138
BccI	CCATC	1 cut(s)	259
BceAI	ACGGC	1 cut(s)	97
BciT130I	CCWGG	2 cut(s)	11, 169
BfaI	CTAG	1 cut(s)	227
BglII	AGATCT	1 cut(s)	286
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
Bme1390I	CCNGG	2 cut(s)	11, 169
Bme18I	GGWCC	1 cut(s)	42
BmeT110I	CYCGRG	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	42
BmrFI	CCNGG	2 cut(s)	11, 169
BoxI	GACNNNNGTC	1 cut(s)	47
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
BpmI	CTGGAG	1 cut(s)	190
BsaWI	WCCGGW	3 cut(s)	44, 141, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse118I	RCCGGY	2 cut(s)	44, 154
BseBI	CCWGG	2 cut(s)	11, 169
BseGI	GGATG	2 cut(s)	115, 132
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseRI	GAGGAG	2 cut(s)	128, 154
BseXI	GCAGC	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	158
BshTI	ACCGGT	1 cut(s)	44
BsiEI	CGRYCG	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	299
BsiHKCI	CYCGRG	1 cut(s)	292
BsiSI	CCGG	4 cut(s)	45, 142, 155, 247
BslI	CCNNNNNNNGG	1 cut(s)	343
BsnI	GGCC	1 cut(s)	158
BsoBI	CYCGRG	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp143I	GATC	1 cut(s)	286
BspACI	CCGC	1 cut(s)	338
BspANI	GGCC	1 cut(s)	158
BsrFI	RCCGGY	2 cut(s)	44, 154
BssAI	RCCGGY	2 cut(s)	44, 154
BssMI	GATC	1 cut(s)	286
BssSI	CACGAG	1 cut(s)	120
Bst2BI	CACGAG	1 cut(s)	120
Bst2UI	CCWGG	2 cut(s)	11, 169
BstC8I	GCNNGC	1 cut(s)	156
BstF5I	GGATG	2 cut(s)	115, 132
BstKTI	GATC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	286
BstMCI	CGRYCG	1 cut(s)	146
BstMWI	GCNNNNNNNGC	1 cut(s)	303
BstNI	CCWGG	2 cut(s)	11, 169
BstPAI	GACNNNNGTC	1 cut(s)	47
BstSCI	CCNGG	2 cut(s)	9, 167
BstV1I	GCAGC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BsuRI	GGCC	1 cut(s)	158
BtsCI	GGATG	2 cut(s)	115, 132
Cac8I	GCNNGC	1 cut(s)	156
Cfr10I	RCCGGY	2 cut(s)	44, 154
Cfr13I	GGNCC	1 cut(s)	42
CspAI	ACCGGT	1 cut(s)	44
CviJI	RGCY	4 cut(s)	151, 158, 204, 297
CviKI_1	RGCY	4 cut(s)	151, 158, 204, 297
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
Ecl136II	GAGCTC	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	42
Eco53kI	GAGCTC	1 cut(s)	297
Eco57I	CTGAAG	1 cut(s)	347
Eco88I	CYCGRG	1 cut(s)	292
EcoICRI	GAGCTC	1 cut(s)	297
EcoRII	CCWGG	2 cut(s)	9, 167
EcoT38I	GRGCYC	1 cut(s)	299
FaiI	YATR	1 cut(s)	210
FauI	CCCGC	1 cut(s)	345
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	152
FokI	GGATG	2 cut(s)	119, 122
FriOI	GRGCYC	1 cut(s)	299
Fsp4HI	GCNGC	1 cut(s)	152
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	1 cut(s)	152
GsuI	CTGGAG	1 cut(s)	190
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	4 cut(s)	45, 142, 155, 247
HincII	GTYRAC	2 cut(s)	195, 334
HindII	GTYRAC	2 cut(s)	195, 334
HinfI	GANTC	5 cut(s)	27, 54, 68, 113, 172
HpaI	GTTAAC	1 cut(s)	334
HpaII	CCGG	4 cut(s)	45, 142, 155, 247
HphI	GGTGA	1 cut(s)	252
Hpy166II	GTNNAC	3 cut(s)	127, 195, 334
Hpy188I	TCNGA	2 cut(s)	53, 73
Hpy188III	TCNNGA	4 cut(s)	31, 215, 227, 292
Hpy8I	GTNNAC	3 cut(s)	127, 195, 334
Hpy99I	CGWCG	2 cut(s)	187, 224
HpyAV	CCTTC	2 cut(s)	169, 322
HpyCH4IV	ACGT	1 cut(s)	222
HpyF10VI	GCNNNNNNNGC	1 cut(s)	303
HpySE526I	ACGT	1 cut(s)	222
KroI	GCCGGC	1 cut(s)	154
KroNI	GCCGGC	1 cut(s)	156
KspAI	GTTAAC	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	286
Lsp1109I	GCAGC	1 cut(s)	138
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	258
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	1 cut(s)	245
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	3 cut(s)	60, 100, 301
MlyI	GAGTC	2 cut(s)	107, 181
MmeI	TCCRAC	2 cut(s)	31, 233
MnlI	CCTC	8 cut(s)	67, 100, 141, 146, 149, 175, 223, 232
MroNI	GCCGGC	1 cut(s)	154
MseI	TTAA	2 cut(s)	99, 333
MspI	CCGG	4 cut(s)	45, 142, 155, 247
MspR9I	CCNGG	2 cut(s)	11, 169
MvaI	CCWGG	2 cut(s)	11, 169
MwoI	GCNNNNNNNGC	1 cut(s)	303
NaeI	GCCGGC	1 cut(s)	156
NdeII	GATC	1 cut(s)	286
NgoMIV	GCCGGC	1 cut(s)	154
NmuCI	GTSAC	1 cut(s)	258
PdiI	GCCGGC	1 cut(s)	156
PfeI	GAWTC	3 cut(s)	27, 54, 68
PfoI	TCCNGGA	1 cut(s)	167
PinAI	ACCGGT	1 cut(s)	44
PkrI	GCNGC	1 cut(s)	153
PleI	GAGTC	2 cut(s)	107, 180
PpsI	GAGTC	2 cut(s)	107, 180
PshAI	GACNNNNGTC	1 cut(s)	47
Psp124BI	GAGCTC	1 cut(s)	299
Psp6I	CCWGG	2 cut(s)	9, 167
PspGI	CCWGG	2 cut(s)	9, 167
PspPI	GGNCC	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	286
SacI	GAGCTC	1 cut(s)	299
SaqAI	TTAA	2 cut(s)	99, 333
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	1 cut(s)	42
SchI	GAGTC	2 cut(s)	107, 181
ScrFI	CCNGG	2 cut(s)	11, 169
SduI	GDGCHC	1 cut(s)	299
SetI	ASST	4 cut(s)	225, 299, 327, 333
SinI	GGWCC	1 cut(s)	42
Sse9I	AATT	3 cut(s)	60, 100, 301
SsiI	CCGC	1 cut(s)	338
SspMI	CTAG	1 cut(s)	227
SstI	GAGCTC	1 cut(s)	299
StyD4I	CCNGG	2 cut(s)	9, 167
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	1 cut(s)	146
TasI	AATT	3 cut(s)	60, 100, 301
TfiI	GAWTC	3 cut(s)	27, 54, 68
Tru1I	TTAA	2 cut(s)	99, 333
Tru9I	TTAA	2 cut(s)	99, 333
TseFI	GTSAC	1 cut(s)	258
TseI	GCWGC	1 cut(s)	151
Tsp45I	GTSAC	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	42
XbaI	TCTAGA	1 cut(s)	226
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.