Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011527

Physical Location & Seq

Genomic Coordinates Forward (+)

29350503 .. 29351050

Gene Structure 548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018407

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCAGAAACTATATGGTCTCAACTCACAAATCTACCAACAGAGAACACTAATAAATGCGAAGGACGGCGGCGTCAGCTACAATGCTCCCAGCTACGCGCTCAATTTTGAGGACAACACCACATGCGTCGACGACATCCTCCTCCGATCGCAGCTGTCGGGCTTCGCCTCCTGGAGTCTGATCCCGCCGGAGAAGTCGACCATGAGCTGGCGTATTCTGGACGACGTTCTAGAGGAAGATGAGGACAACCAGAGCTGGAGGTCACCGACGAGGAACAAAGCTGGAGGTCACCGATGGCGAACAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

103

Amino Acids

11.71

Weight (kDa)

5.25

Isoelectric Point (pI)

64.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011527)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g28320
prunus_persica	Prupe.1G486000_v2.0.a1
pyrus_communis	pycom08g13280 pycom15g11770
rosa_laevigata	RLG00000011619 RLG00000018407
rosa_multiflora	Rmu_co8401359.1_g000001 Rmu_sc0013249.1_g000003
rosa_roxburghii	Rroxscaffold_7G00170760
rosa_samantha	Rh1AG304200 Rh1CG072500 Rh1DG077400 Rh4DG233900 Rh6AG381200 Rh6BG389400 Rh6CG394600 Rh6DG381300 Rh7AG417200 Rh7BG387500
rosa_wichuraiana	Rw6G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AccB7I	CCANNNNNTGG	1 cut(s)	207
AccI	GTMKAC	2 cut(s)	129, 197
AccII	CGCG	1 cut(s)	98
AciI	CCGC	2 cut(s)	69, 185
AclWI	GGATC	1 cut(s)	175
AcyI	GRCGYC	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	207
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	6 cut(s)	78, 93, 154, 207, 255, 281
AluI	AGCT	6 cut(s)	78, 93, 154, 207, 255, 281
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	151
AspLEI	GCGC	1 cut(s)	100
AsuHPI	GGTGA	2 cut(s)	255, 281
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	1 cut(s)	288
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	23
BfaI	CTAG	1 cut(s)	230
BisI	GCNGC	2 cut(s)	70, 152
BlsI	GCNGC	2 cut(s)	71, 153
Bme1390I	CCNGG	1 cut(s)	172
BmrFI	CCNGG	1 cut(s)	172
BpmI	CTGGAG	3 cut(s)	193, 277, 303
BsaHI	GRCGYC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	172
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseRI	GAGGAG	1 cut(s)	131
BseXI	GCAGC	1 cut(s)	163
BseYI	CCCAGC	1 cut(s)	89
Bsh1236I	CGCG	1 cut(s)	98
Bsh1285I	CGRYCG	1 cut(s)	149
BsiEI	CGRYCG	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	1 cut(s)	23
Bso31I	GGTCTC	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	146, 180
BspACI	CCGC	2 cut(s)	69, 185
BspFNI	CGCG	1 cut(s)	98
BspPI	GGATC	1 cut(s)	175
BspTNI	GGTCTC	1 cut(s)	23
BssMI	GATC	2 cut(s)	146, 180
BssNI	GRCGYC	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	172
BstACI	GRCGYC	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	209
BstEII	GGTNACC	2 cut(s)	261, 287
BstF5I	GGATG	1 cut(s)	135
BstFNI	CGCG	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	2 cut(s)	149, 183
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	2 cut(s)	146, 180
BstMCI	CGRYCG	1 cut(s)	149
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstNI	CCWGG	1 cut(s)	172
BstNSI	RCATGY	1 cut(s)	126
BstPI	GGTNACC	2 cut(s)	261, 287
BstSCI	CCNGG	1 cut(s)	170
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	209
CfoI	GCGC	1 cut(s)	100
CseI	GACGC	2 cut(s)	61, 115
CviAII	CATG	2 cut(s)	123, 202
CviJI	RGCY	7 cut(s)	78, 93, 154, 162, 207, 255, 281
CviKI_1	RGCY	7 cut(s)	78, 93, 154, 162, 207, 255, 281
DpnI	GATC	2 cut(s)	148, 182
DpnII	GATC	2 cut(s)	146, 180
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
Eco31I	GGTCTC	1 cut(s)	23
Eco91I	GGTNACC	2 cut(s)	261, 287
EcoO65I	GGTNACC	2 cut(s)	261, 287
EcoRII	CCWGG	1 cut(s)	170
FaeI	CATG	2 cut(s)	126, 205
FaiI	YATR	4 cut(s)	13, 15, 124, 203
FatI	CATG	2 cut(s)	122, 201
FauI	CCCGC	1 cut(s)	192
FblI	GTMKAC	2 cut(s)	129, 197
Fnu4HI	GCNGC	2 cut(s)	70, 152
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	2 cut(s)	70, 152
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	2 cut(s)	70, 152
GsaI	CCCAGC	1 cut(s)	93
GsuI	CTGGAG	3 cut(s)	193, 277, 303
HapII	CCGG	1 cut(s)	188
HgaI	GACGC	2 cut(s)	61, 115
HhaI	GCGC	1 cut(s)	100
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	2 cut(s)	126, 205
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HincII	GTYRAC	2 cut(s)	130, 198
HindII	GTYRAC	2 cut(s)	130, 198
HinfI	GANTC	1 cut(s)	175
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	2 cut(s)	255, 281
Hpy166II	GTNNAC	2 cut(s)	130, 198
Hpy188I	TCNGA	3 cut(s)	146, 180, 308
Hpy188III	TCNNGA	2 cut(s)	218, 230
Hpy8I	GTNNAC	2 cut(s)	130, 198
Hpy99I	CGWCG	4 cut(s)	131, 134, 227, 271
HpyAV	CCTTC	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpySE526I	ACGT	1 cut(s)	225
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	126, 205
HspAI	GCGC	1 cut(s)	98
Kzo9I	GATC	2 cut(s)	146, 180
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	9 cut(s)	103, 157, 184, 193, 201, 203, 241, 263, 267
Lsp1109I	GCAGC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	2 cut(s)	261, 287
MalI	GATC	2 cut(s)	148, 182
MboI	GATC	2 cut(s)	146, 180
MboII	GAAGA	1 cut(s)	248
MluCI	AATT	1 cut(s)	103
MlyI	GAGTC	1 cut(s)	184
MnlI	CCTC	9 cut(s)	103, 149, 152, 178, 226, 235, 252, 264, 278
MspA1I	CMGCKG	1 cut(s)	154
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	172
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	75
NdeII	GATC	2 cut(s)	146, 180
NlaIII	CATG	2 cut(s)	126, 205
NmuCI	GTSAC	2 cut(s)	261, 287
NspI	RCATGY	1 cut(s)	126
PflMI	CCANNNNNTGG	1 cut(s)	207
PfoI	TCCNGGA	1 cut(s)	170
PkrI	GCNGC	2 cut(s)	71, 153
Ple19I	CGATCG	1 cut(s)	149
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	170
PspEI	GGTNACC	2 cut(s)	261, 287
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	170
PvuI	CGATCG	1 cut(s)	149
PvuII	CAGCTG	1 cut(s)	154
SalI	GTCGAC	2 cut(s)	128, 196
SatI	GCNGC	2 cut(s)	70, 152
Sau3AI	GATC	2 cut(s)	146, 180
SchI	GAGTC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	172
SetI	ASST	9 cut(s)	80, 95, 156, 209, 228, 257, 263, 283, 289
SgrDI	CGTCGACG	1 cut(s)	128
Sse9I	AATT	1 cut(s)	103
SsiI	CCGC	2 cut(s)	69, 185
SspMI	CTAG	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	170
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	2 cut(s)	129, 197
TasI	AATT	1 cut(s)	103
TauI	GCSGC	1 cut(s)	72
TseFI	GTSAC	2 cut(s)	261, 287
TseI	GCWGC	1 cut(s)	151
Tsp45I	GTSAC	2 cut(s)	261, 287
Van91I	CCANNNNNTGG	1 cut(s)	207
XbaI	TCTAGA	1 cut(s)	229
XceI	RCATGY	1 cut(s)	126
XmiI	GTMKAC	2 cut(s)	129, 197
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.