Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0011527

Physical Location & Seq

Genomic Coordinates Reverse (-)

14873047 .. 14873921

Gene Structure 875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG072500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGCGTCGAGGACATCCTCCTCCTTCGCGGCTGCCAGCCTTCGCCCCCTGGAGTCTAAACCAGCCGGAGAAGTCGACCACAAGCCGGCATATTCTGGACGACGTTCAAGAGGAAGATGAGGATAACCGGAGTTGGAGGTCACGGACGGAGAACAATCTGAAGGAGAAGCATCACCGATCGCTGTGCCGACGGATCTCCCGAGCTCAAATTGCGACACCACTATCCAAGACCCAAAGGTTAACTCGCTTGTGGAGAACCAGATGCTTCCGTTCAGGCTCGAAATCTACTCGCCGTTCGACGATCAGCTACTTCACCGGCGAGATCGTGAGGTCTGCAACTCATCGTGTCAAGGTCGCCGTCATCGCTTTTTCACTTGATGGAGAACTCCATGAATACTCGAGCACAAGCATGGAACACACTCTTGAGAGATACAAGAACAGGACTGGCCTCGTCCTCCCAAGCAGGGTCGAGTCTTTGGCGCCAGAAGAGCACCGCCATGAACCTGCAAAGCAGGAACTGCAGGAAAGACATAAAGTGCTACGCTTGGAGAAATTGCGGAGAATGGGAAAGGAGTTGGATGAGTTCGGAAGTGCTGTCTACGCTTTTGGAACAACAAACTATAAGGGTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

210

Amino Acids

24.57

Weight (kDa)

10.17

Isoelectric Point (pI)

66.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011527)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g28320
prunus_persica	Prupe.1G486000_v2.0.a1
pyrus_communis	pycom08g13280 pycom15g11770
rosa_laevigata	RLG00000011619 RLG00000018407
rosa_multiflora	Rmu_co8401359.1_g000001 Rmu_sc0013249.1_g000003
rosa_roxburghii	Rroxscaffold_7G00170760
rosa_samantha	Rh1AG304200 Rh1CG072500 Rh1DG077400 Rh4DG233900 Rh6AG381200 Rh6BG389400 Rh6CG394600 Rh6DG381300 Rh7AG417200 Rh7BG387500
rosa_wichuraiana	Rw6G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	511
AccB1I	GGYRCC	1 cut(s)	478
AccI	GTMKAC	2 cut(s)	74, 597
AccII	CGCG	1 cut(s)	28
AciI	CCGC	3 cut(s)	28, 493, 556
AclWI	GGATC	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	179
AcyI	GRCGYC	1 cut(s)	479
AfiI	CCNNNNNNNGG	2 cut(s)	84, 463
AgsI	TTSAA	1 cut(s)	107
AjnI	CCWGG	1 cut(s)	47
AluBI	AGCT	2 cut(s)	203, 306
AluI	AGCT	2 cut(s)	203, 306
Alw21I	GWGCWC	3 cut(s)	205, 404, 492
AlwI	GGATC	1 cut(s)	200
AlwNI	CAGNNNCTG	1 cut(s)	517
Ama87I	CYCGRG	2 cut(s)	198, 397
AoxI	GGCC	1 cut(s)	445
ApeKI	GCWGC	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	481
AsuHPI	GGTGA	2 cut(s)	164, 304
AvaI	CYCGRG	2 cut(s)	198, 397
BanI	GGYRCC	1 cut(s)	478
BanII	GRGCYC	1 cut(s)	205
Bbv12I	GWGCWC	3 cut(s)	205, 404, 492
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	1 cut(s)	371
BceAI	ACGGC	2 cut(s)	276, 341
BcgI	CGANNNNNNTGC	2 cut(s)	165, 199
BciT130I	CCWGG	1 cut(s)	49
BfmI	CTRYAG	1 cut(s)	518
BfoI	RGCGCY	1 cut(s)	482
BfuAI	ACCTGC	1 cut(s)	511
BisI	GCNGC	2 cut(s)	29, 32
BlsI	GCNGC	2 cut(s)	30, 33
Bme1390I	CCNGG	1 cut(s)	49
BmeT110I	CYCGRG	2 cut(s)	198, 397
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	1 cut(s)	49
BmsI	GCATC	2 cut(s)	178, 251
BpmI	CTGGAG	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	443
BsaHI	GRCGYC	1 cut(s)	479
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 463
Bse118I	RCCGGY	2 cut(s)	84, 314
Bse1I	ACTGG	1 cut(s)	448
BseBI	CCWGG	1 cut(s)	49
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	2 cut(s)	13, 583
BseLI	CCNNNNNNNGG	2 cut(s)	84, 463
BseNI	ACTGG	1 cut(s)	448
BseRI	GAGGAG	1 cut(s)	9
BseXI	GCAGC	1 cut(s)	18
Bsh1236I	CGCG	1 cut(s)	28
Bsh1285I	CGRYCG	1 cut(s)	179
BshFI	GGCC	1 cut(s)	447
BshNI	GGYRCC	1 cut(s)	478
BsiEI	CGRYCG	1 cut(s)	179
BsiHKAI	GWGCWC	3 cut(s)	205, 404, 492
BsiHKCI	CYCGRG	2 cut(s)	198, 397
BsiSI	CCGG	4 cut(s)	65, 85, 127, 315
BslI	CCNNNNNNNGG	2 cut(s)	84, 463
BsnI	GGCC	1 cut(s)	447
BsoBI	CYCGRG	2 cut(s)	198, 397
Bsp1286I	GDGCHC	3 cut(s)	205, 404, 492
Bsp143I	GATC	4 cut(s)	176, 192, 300, 321
BspACI	CCGC	3 cut(s)	28, 493, 556
BspANI	GGCC	1 cut(s)	447
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	480
BspMAI	CTGCAG	1 cut(s)	522
BspMI	ACCTGC	1 cut(s)	511
BspPI	GGATC	1 cut(s)	200
BspQI	GCTCTTC	1 cut(s)	480
BspT107I	GGYRCC	1 cut(s)	478
BsrFI	RCCGGY	2 cut(s)	84, 314
BsrI	ACTGG	1 cut(s)	448
BssAI	RCCGGY	2 cut(s)	84, 314
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	4 cut(s)	176, 192, 300, 321
BssNI	GRCGYC	1 cut(s)	479
Bst2UI	CCWGG	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	480
BstACI	GRCGYC	1 cut(s)	479
BstAPI	GCANNNNNTGC	1 cut(s)	517
BstC8I	GCNNGC	2 cut(s)	36, 86
BstF5I	GGATG	2 cut(s)	13, 583
BstFNI	CGCG	1 cut(s)	28
BstH2I	RGCGCY	1 cut(s)	482
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	4 cut(s)	179, 195, 303, 324
BstMBI	GATC	4 cut(s)	176, 192, 300, 321
BstMCI	CGRYCG	1 cut(s)	179
BstMWI	GCNNNNNNNGC	5 cut(s)	209, 362, 487, 517, 599
BstNI	CCWGG	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	47
BstSFI	CTRYAG	1 cut(s)	518
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	447
BtgZI	GCGATG	1 cut(s)	346
BtsCI	GGATG	2 cut(s)	13, 583
BveI	ACCTGC	1 cut(s)	511
Cac8I	GCNNGC	2 cut(s)	36, 86
CaiI	CAGNNNCTG	1 cut(s)	517
CfoI	GCGC	1 cut(s)	481
Cfr10I	RCCGGY	2 cut(s)	84, 314
CviAII	CATG	3 cut(s)	389, 409, 497
CviJI	RGCY	8 cut(s)	31, 38, 64, 84, 203, 276, 306, 447
CviKI_1	RGCY	8 cut(s)	31, 38, 64, 84, 203, 276, 306, 447
DinI	GGCGCC	1 cut(s)	480
DpnI	GATC	4 cut(s)	178, 194, 302, 323
DpnII	GATC	4 cut(s)	176, 192, 300, 321
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
Ecl136II	GAGCTC	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	179
Eco88I	CYCGRG	2 cut(s)	198, 397
EcoICRI	GAGCTC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	205
EgeI	GGCGCC	1 cut(s)	480
EheI	GGCGCC	1 cut(s)	480
FaeI	CATG	3 cut(s)	392, 412, 500
FaiI	YATR	6 cut(s)	90, 390, 410, 498, 531, 621
FatI	CATG	3 cut(s)	388, 408, 496
FblI	GTMKAC	2 cut(s)	74, 597
Fnu4HI	GCNGC	2 cut(s)	29, 32
FokI	GGATG	1 cut(s)	590
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	2 cut(s)	29, 32
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	2 cut(s)	29, 32
GsuI	CTGGAG	1 cut(s)	70
HaeII	RGCGCY	1 cut(s)	482
HaeIII	GGCC	1 cut(s)	447
HapII	CCGG	4 cut(s)	65, 85, 127, 315
HhaI	GCGC	1 cut(s)	481
Hin1I	GRCGYC	1 cut(s)	479
Hin1II	CATG	3 cut(s)	392, 412, 500
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HincII	GTYRAC	2 cut(s)	75, 240
HindII	GTYRAC	2 cut(s)	75, 240
HinfI	GANTC	2 cut(s)	52, 470
HpaI	GTTAAC	1 cut(s)	240
HpaII	CCGG	4 cut(s)	65, 85, 127, 315
HphI	GGTGA	2 cut(s)	164, 304
Hpy166II	GTNNAC	3 cut(s)	75, 240, 598
Hpy188I	TCNGA	2 cut(s)	159, 587
Hpy188III	TCNNGA	5 cut(s)	95, 107, 198, 325, 422
Hpy8I	GTNNAC	3 cut(s)	75, 240, 598
Hpy99I	CGWCG	4 cut(s)	9, 104, 192, 301
HpyAV	CCTTC	3 cut(s)	33, 49, 154
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	3 cut(s)	335, 506, 520
HpyF10VI	GCNNNNNNNGC	5 cut(s)	209, 362, 487, 517, 599
HpySE526I	ACGT	1 cut(s)	102
Hsp92I	GRCGYC	1 cut(s)	479
Hsp92II	CATG	3 cut(s)	392, 412, 500
HspAI	GCGC	1 cut(s)	479
KasI	GGCGCC	1 cut(s)	478
KroI	GCCGGC	1 cut(s)	84
KroNI	GCCGGC	1 cut(s)	86
KspAI	GTTAAC	1 cut(s)	240
Kzo9I	GATC	4 cut(s)	176, 192, 300, 321
LguI	GCTCTTC	1 cut(s)	480
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	2 cut(s)	178, 251
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	138
MalI	GATC	4 cut(s)	178, 194, 302, 323
MboI	GATC	4 cut(s)	176, 192, 300, 321
MboII	GAAGA	2 cut(s)	125, 497
MflI	RGATCY	1 cut(s)	192
MhlI	GDGCHC	3 cut(s)	205, 404, 492
MluCI	AATT	2 cut(s)	207, 551
Mly113I	GGCGCC	1 cut(s)	479
MlyI	GAGTC	2 cut(s)	61, 479
MmeI	TCCRAC	2 cut(s)	113, 555
MnlI	CCTC	8 cut(s)	27, 30, 103, 112, 129, 321, 458, 464
MroNI	GCCGGC	1 cut(s)	84
MseI	TTAA	1 cut(s)	239
MslI	CAYNNNNRTG	2 cut(s)	407, 495
MspI	CCGG	4 cut(s)	65, 85, 127, 315
MspR9I	CCNGG	1 cut(s)	49
MvaI	CCWGG	1 cut(s)	49
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	5 cut(s)	209, 362, 487, 517, 599
NaeI	GCCGGC	1 cut(s)	86
NarI	GGCGCC	1 cut(s)	479
NdeII	GATC	4 cut(s)	176, 192, 300, 321
NgoMIV	GCCGGC	1 cut(s)	84
NlaIII	CATG	3 cut(s)	392, 412, 500
NlaIV	GGNNCC	1 cut(s)	480
NmuCI	GTSAC	1 cut(s)	138
PaeR7I	CTCGAG	1 cut(s)	397
PciSI	GCTCTTC	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	1 cut(s)	196
PdiI	GCCGGC	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	30, 33
Ple19I	CGATCG	1 cut(s)	179
PleI	GAGTC	2 cut(s)	60, 478
PluTI	GGCGCC	1 cut(s)	482
PpsI	GAGTC	2 cut(s)	60, 478
Psp124BI	GAGCTC	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	480
PspXI	VCTCGAGB	1 cut(s)	397
PstI	CTGCAG	1 cut(s)	522
PstNI	CAGNNNCTG	1 cut(s)	517
PsuI	RGATCY	1 cut(s)	192
PvuI	CGATCG	1 cut(s)	179
RseI	CAYNNNNRTG	2 cut(s)	407, 495
SacI	GAGCTC	1 cut(s)	205
SalI	GTCGAC	1 cut(s)	73
SapI	GCTCTTC	1 cut(s)	480
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	2 cut(s)	29, 32
Sau3AI	GATC	4 cut(s)	176, 192, 300, 321
SchI	GAGTC	2 cut(s)	61, 479
ScrFI	CCNGG	1 cut(s)	49
SduI	GDGCHC	3 cut(s)	205, 404, 492
SetI	ASST	8 cut(s)	105, 140, 205, 239, 308, 332, 354, 505
SfaNI	GCATC	2 cut(s)	178, 251
SfcI	CTRYAG	1 cut(s)	518
SfoI	GGCGCC	1 cut(s)	480
Sfr274I	CTCGAG	1 cut(s)	397
SgrAI	CRCCGGYG	1 cut(s)	314
SlaI	CTCGAG	1 cut(s)	397
SmiMI	CAYNNNNRTG	2 cut(s)	407, 495
SmlI	CTYRAG	2 cut(s)	397, 422
SmoI	CTYRAG	2 cut(s)	397, 422
Sse9I	AATT	2 cut(s)	207, 551
SsiI	CCGC	3 cut(s)	28, 493, 556
SspDI	GGCGCC	1 cut(s)	478
SstI	GAGCTC	1 cut(s)	205
StyD4I	CCNGG	1 cut(s)	47
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	6 cut(s)	7, 74, 278, 296, 398, 468
TasI	AATT	2 cut(s)	207, 551
TauI	GCSGC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TseFI	GTSAC	1 cut(s)	138
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	138
TspDTI	ATGAA	2 cut(s)	405, 513
TspGWI	ACGGA	4 cut(s)	157, 161, 205, 257
XhoI	CTCGAG	1 cut(s)	397
XmiI	GTMKAC	2 cut(s)	74, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.