Rh6BG389400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011527
Physical Location & Seq
Reverse (-)
61780634 .. 61782221
1588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG389400.1

Sequence Viewer

Length: 744 bp
ATGTGGAACGACAACGGGACCGTATCGCCGACGGGGAACAATCTGAAGGAGAAGCGTCACCGATCGATGATGTGCATGCCGGTGTGTTTCTCCAGCTCCACGCATCCTTTTGACGTTTTGGACGACGAGGACTACATCAGGACTCCACGGTCGCCGGTGATGCCGGAGATCAGGGACCGGTGCCGGAATCTCATTAACAGAATCGGAGGAGGAGGGAGGCGCAGGAGGGCGTCGTCGGCAGACTTCAGCTACGACGCTTCCAGCTACGCTCTCAATTTCGAGGACGACACCACACGCGCCGACGACATCCTCTTCCGGTCGCGGCTGCCGTCCTCCGCCTCCGGGAGCCTGACCCCGCCGGAGAAGTCGACCACGAGCCGGCACATTCTGGACGACGTTCTGGAGGAAGATGAGGACAACCGGAGCTGGAGGAGAAACCAAATGAGGCGGTGGCCGCCTGAGGACAAGGAGAAGAGTACGAAGAGCCGGAACATGGTGTCGAGAATCGGACTGCGGGGACGGAACCGCCACTCGTCCACGTCGGCCGACTTCAGCTACGAGCCGTCCAGCTACGCGCTCAATTTCGAAGACGATAGCAGCAAAGCCGACGAGCTTGGCCCTGGCAATGGATTCATGGCGCGTTTGCCGCACTCGCCTTTGCCGTCGGTTCAGAGTTCTGCATCACCGCCGCTGCCGCCTGCAAAGTGTTCGGCGGTGCGCCCAGAGATTGCTGCCTTTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

27.76

Weight (kDa)

7.67

Isoelectric Point (pI)

85.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 148
AccB1I GGYRCC 1 cut(s) 180
AccI GTMKAC 1 cut(s) 368
AccII CGCG 4 cut(s) 297, 322, 575, 640
AcoI YGGCCR 2 cut(s) 452, 543
AcuI CTGAAG 3 cut(s) 65, 229, 535
AcyI GRCGYC 1 cut(s) 230
AfaI GTAC 1 cut(s) 478
AfiI CCNNNNNNNGG 4 cut(s) 342, 378, 493, 626
AgeI ACCGGT 1 cut(s) 177
AjiI CACGTC 1 cut(s) 540
AjnI CCWGG 1 cut(s) 619
AluBI AGCT 7 cut(s) 96, 249, 264, 426, 555, 570, 613
AluI AGCT 7 cut(s) 96, 249, 264, 426, 555, 570, 613
AoxI GGCC 3 cut(s) 452, 543, 616
ApeKI GCWGC 4 cut(s) 325, 597, 691, 731
AsiGI ACCGGT 1 cut(s) 177
AspLEI GCGC 5 cut(s) 222, 299, 577, 640, 720
AspS9I GGNCC 3 cut(s) 18, 175, 617
AsuC2I CCSGG 1 cut(s) 343
AsuHPI GGTGA 3 cut(s) 50, 169, 675
AsuII TTCGAA 1 cut(s) 585
AvaII GGWCC 2 cut(s) 18, 175
AxyI CCTNAGG 1 cut(s) 459
BanI GGYRCC 1 cut(s) 180
BauI CACGAG 1 cut(s) 373
BbsI GAAGAC 1 cut(s) 594
BbvI GCAGC 4 cut(s) 312, 609, 678, 718
BceAI ACGGC 3 cut(s) 313, 547, 646
BcgI CGANNNNNNTGC 2 cut(s) 690, 724
BciT130I CCWGG 1 cut(s) 621
BcnI CCSGG 1 cut(s) 343
BisI GCNGC 9 cut(s) 323, 326, 455, 598, 647, 689, 692, 695, 732
BlsI GCNGC 9 cut(s) 324, 327, 456, 599, 648, 690, 693, 696, 733
Bme1390I CCNGG 2 cut(s) 343, 621
Bme18I GGWCC 2 cut(s) 18, 175
BmgBI CACGTC 1 cut(s) 540
BmgT120I GGNCC 3 cut(s) 18, 175, 617
BmiI GGNNCC 5 cut(s) 19, 176, 182, 347, 524
BmrFI CCNGG 2 cut(s) 343, 621
BmsI GCATC 3 cut(s) 112, 150, 689
BpiI GAAGAC 1 cut(s) 594
BpmI CTGGAG 3 cut(s) 76, 422, 448
Bpu14I TTCGAA 1 cut(s) 585
BpuMI CCSGG 1 cut(s) 343
Bsa29I ATCGAT 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 146, 619
BsaWI WCCGGW 3 cut(s) 177, 315, 420
Bsc4I CCNNNNNNNGG 4 cut(s) 342, 378, 493, 626
Bse118I RCCGGY 4 cut(s) 79, 154, 177, 378
Bse21I CCTNAGG 1 cut(s) 459
Bse3DI GCAATG 1 cut(s) 631
BseBI CCWGG 1 cut(s) 621
BseCI ATCGAT 1 cut(s) 65
BseDI CCNNGG 2 cut(s) 146, 619
BseGI GGATG 2 cut(s) 103, 306
BseLI CCNNNNNNNGG 4 cut(s) 342, 378, 493, 626
BseMI GCAATG 1 cut(s) 631
BseMII CTCAG 1 cut(s) 450
BseRI GAGGAG 3 cut(s) 222, 225, 445
BseX3I CGGCCG 1 cut(s) 543
BseXI GCAGC 4 cut(s) 312, 609, 678, 718
Bsh1236I CGCG 4 cut(s) 297, 322, 575, 640
Bsh1285I CGRYCG 4 cut(s) 65, 152, 320, 546
BshFI GGCC 3 cut(s) 454, 545, 618
BshNI GGYRCC 1 cut(s) 180
BshTI ACCGGT 1 cut(s) 177
BshVI ATCGAT 1 cut(s) 65
BsiEI CGRYCG 4 cut(s) 65, 152, 320, 546
BslFI GGGAC 3 cut(s) 31, 188, 531
BslI CCNNNNNNNGG 4 cut(s) 342, 378, 493, 626
BsmFI GGGAC 3 cut(s) 31, 188, 531
BsnI GGCC 3 cut(s) 454, 545, 618
Bsp119I TTCGAA 1 cut(s) 585
Bsp143I GATC 2 cut(s) 62, 168
BspANI GGCC 3 cut(s) 454, 545, 618
BspCNI CTCAG 1 cut(s) 451
BspDI ATCGAT 1 cut(s) 65
BspFNI CGCG 4 cut(s) 297, 322, 575, 640
BspLI GGNNCC 5 cut(s) 19, 176, 182, 347, 524
BspQI GCTCTTC 1 cut(s) 476
BspT104I TTCGAA 1 cut(s) 585
BspT107I GGYRCC 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 631
BsrFI RCCGGY 4 cut(s) 79, 154, 177, 378
BssAI RCCGGY 4 cut(s) 79, 154, 177, 378
BssECI CCNNGG 2 cut(s) 146, 619
BssMI GATC 2 cut(s) 62, 168
BssNI GRCGYC 1 cut(s) 230
BssSI CACGAG 1 cut(s) 373
Bst2BI CACGAG 1 cut(s) 373
Bst2UI CCWGG 1 cut(s) 621
Bst4CI ACNGT 2 cut(s) 22, 150
Bst6I CTCTTC 3 cut(s) 317, 467, 476
BstACI GRCGYC 1 cut(s) 230
BstBI TTCGAA 1 cut(s) 585
BstC8I GCNNGC 3 cut(s) 77, 380, 699
BstDEI CTNAG 1 cut(s) 459
BstDSI CCRYGG 1 cut(s) 146
BstF5I GGATG 2 cut(s) 103, 306
BstFNI CGCG 4 cut(s) 297, 322, 575, 640
BstHHI GCGC 5 cut(s) 222, 299, 577, 640, 720
BstKTI GATC 2 cut(s) 65, 171
BstMBI GATC 2 cut(s) 62, 168
BstMCI CGRYCG 4 cut(s) 65, 152, 320, 546
BstMWI GCNNNNNNNGC 6 cut(s) 160, 236, 454, 646, 652, 694
BstNI CCWGG 1 cut(s) 621
BstNSI RCATGY 1 cut(s) 79
BstSCI CCNGG 2 cut(s) 341, 619
BstUI CGCG 4 cut(s) 297, 322, 575, 640
BstV1I GCAGC 4 cut(s) 312, 609, 678, 718
BstV2I GAAGAC 1 cut(s) 594
BstZI CGGCCG 1 cut(s) 543
Bsu15I ATCGAT 1 cut(s) 65
Bsu36I CCTNAGG 1 cut(s) 459
BsuRI GGCC 3 cut(s) 454, 545, 618
BsuTUI ATCGAT 1 cut(s) 65
BtgI CCRYGG 1 cut(s) 146
BtrI CACGTC 1 cut(s) 540
BtsCI GGATG 2 cut(s) 103, 306
Cac8I GCNNGC 3 cut(s) 77, 380, 699
CfoI GCGC 5 cut(s) 222, 299, 577, 640, 720
Cfr10I RCCGGY 4 cut(s) 79, 154, 177, 378
Cfr13I GGNCC 3 cut(s) 18, 175, 617
ClaI ATCGAT 1 cut(s) 65
CseI GACGC 3 cut(s) 44, 219, 263
Csp6I GTAC 1 cut(s) 477
CspAI ACCGGT 1 cut(s) 177
CviAII CATG 3 cut(s) 76, 493, 634
CviQI GTAC 1 cut(s) 477
DdeI CTNAG 1 cut(s) 459
DpnI GATC 2 cut(s) 64, 170
DpnII GATC 2 cut(s) 62, 168
DrdI GACNNNNNNGTC 1 cut(s) 148
DseDI GACNNNNNNGTC 1 cut(s) 148
EaeI YGGCCR 2 cut(s) 452, 543
EagI CGGCCG 1 cut(s) 543
Eam1104I CTCTTC 3 cut(s) 317, 467, 476
EarI CTCTTC 3 cut(s) 317, 467, 476
EciI GGCGGA 1 cut(s) 325
EclXI CGGCCG 1 cut(s) 543
Eco47I GGWCC 2 cut(s) 18, 175
Eco52I CGGCCG 1 cut(s) 543
Eco57I CTGAAG 3 cut(s) 65, 229, 535
Eco81I CCTNAGG 1 cut(s) 459
EcoRII CCWGG 1 cut(s) 619
FaeI CATG 3 cut(s) 79, 496, 637
FaiI YATR 3 cut(s) 77, 494, 635
FaqI GGGAC 3 cut(s) 31, 188, 531
FatI CATG 3 cut(s) 75, 492, 633
FauI CCCGC 2 cut(s) 363, 507
FblI GTMKAC 1 cut(s) 368
Fnu4HI GCNGC 9 cut(s) 323, 326, 455, 598, 647, 689, 692, 695, 732
FokI GGATG 2 cut(s) 90, 293
Fsp4HI GCNGC 9 cut(s) 323, 326, 455, 598, 647, 689, 692, 695, 732
GlaI GCGC 5 cut(s) 221, 298, 576, 639, 719
GluI GCNGC 9 cut(s) 323, 326, 455, 598, 647, 689, 692, 695, 732
GsuI CTGGAG 3 cut(s) 76, 422, 448
HaeIII GGCC 3 cut(s) 454, 545, 618
HgaI GACGC 3 cut(s) 44, 219, 263
HhaI GCGC 5 cut(s) 222, 299, 577, 640, 720
Hin1I GRCGYC 1 cut(s) 230
Hin1II CATG 3 cut(s) 79, 496, 637
Hin6I GCGC 5 cut(s) 220, 297, 575, 638, 718
HinP1I GCGC 5 cut(s) 220, 297, 575, 638, 718
HincII GTYRAC 1 cut(s) 369
HindII GTYRAC 1 cut(s) 369
HinfI GANTC 5 cut(s) 142, 187, 201, 504, 630
HphI GGTGA 3 cut(s) 50, 169, 675
Hpy166II GTNNAC 2 cut(s) 369, 537
Hpy188I TCNGA 4 cut(s) 45, 206, 509, 672
Hpy188III TCNNGA 4 cut(s) 139, 389, 401, 501
Hpy8I GTNNAC 2 cut(s) 369, 537
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 2 cut(s) 22, 150
HpyCH4IV ACGT 3 cut(s) 114, 396, 539
HpyCH4V TGCA 3 cut(s) 75, 680, 701
HpyF10VI GCNNNNNNNGC 6 cut(s) 160, 236, 454, 646, 652, 694
HpyF3I CTNAG 1 cut(s) 459
HpySE526I ACGT 3 cut(s) 114, 396, 539
Hsp92I GRCGYC 1 cut(s) 230
Hsp92II CATG 3 cut(s) 79, 496, 637
HspAI GCGC 5 cut(s) 220, 297, 575, 638, 718
KroI GCCGGC 1 cut(s) 378
KroNI GCCGGC 1 cut(s) 380
Kzo9I GATC 2 cut(s) 62, 168
LguI GCTCTTC 1 cut(s) 476
LmnI GCTCC 3 cut(s) 101, 345, 423
Lsp1109I GCAGC 4 cut(s) 312, 609, 678, 718
LweI GCATC 3 cut(s) 112, 150, 689
MaeII ACGT 3 cut(s) 114, 396, 539
MaeIII GTNAC 1 cut(s) 56
MalI GATC 2 cut(s) 64, 170
MboI GATC 2 cut(s) 62, 168
MboII GAAGA 5 cut(s) 304, 419, 484, 493, 599
MluCI AATT 2 cut(s) 274, 580
MlyI GAGTC 1 cut(s) 136
MroNI GCCGGC 1 cut(s) 378
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 80
MspA1I CMGCKG 1 cut(s) 691
MspR9I CCNGG 2 cut(s) 343, 621
MvaI CCWGG 1 cut(s) 621
MvnI CGCG 4 cut(s) 297, 322, 575, 640
MwoI GCNNNNNNNGC 6 cut(s) 160, 236, 454, 646, 652, 694
NaeI GCCGGC 1 cut(s) 380
NciI CCSGG 1 cut(s) 343
NdeII GATC 2 cut(s) 62, 168
NgoMIV GCCGGC 1 cut(s) 378
NlaIII CATG 3 cut(s) 79, 496, 637
NlaIV GGNNCC 5 cut(s) 19, 176, 182, 347, 524
NmuCI GTSAC 1 cut(s) 56
NspI RCATGY 1 cut(s) 79
NspV TTCGAA 1 cut(s) 585
PaeI GCATGC 1 cut(s) 79
PciSI GCTCTTC 1 cut(s) 476
PcsI WCGNNNNNNNCGW 3 cut(s) 120, 326, 659
PdiI GCCGGC 1 cut(s) 380
PfeI GAWTC 4 cut(s) 187, 201, 504, 630
PfoI TCCNGGA 1 cut(s) 341
PinAI ACCGGT 1 cut(s) 177
PkrI GCNGC 9 cut(s) 324, 327, 456, 599, 648, 690, 693, 696, 733
Ple19I CGATCG 1 cut(s) 65
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 619
PspGI CCWGG 1 cut(s) 619
PspN4I GGNNCC 5 cut(s) 19, 176, 182, 347, 524
PspPI GGNCC 3 cut(s) 18, 175, 617
PvuI CGATCG 1 cut(s) 65
RsaI GTAC 1 cut(s) 478
RsaNI GTAC 1 cut(s) 477
RseI CAYNNNNRTG 1 cut(s) 80
SalI GTCGAC 1 cut(s) 367
SapI GCTCTTC 1 cut(s) 476
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 9 cut(s) 323, 326, 455, 598, 647, 689, 692, 695, 732
Sau3AI GATC 2 cut(s) 62, 168
Sau96I GGNCC 3 cut(s) 18, 175, 617
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 2 cut(s) 343, 621
SfaNI GCATC 3 cut(s) 112, 150, 689
SfuI TTCGAA 1 cut(s) 585
SgrAI CRCCGGYG 1 cut(s) 154
SinI GGWCC 2 cut(s) 18, 175
SmiMI CAYNNNNRTG 1 cut(s) 80
SphI GCATGC 1 cut(s) 79
Sse9I AATT 2 cut(s) 274, 580
StyD4I CCNGG 2 cut(s) 341, 619
TaaI ACNGT 2 cut(s) 22, 150
TaiI ACGT 3 cut(s) 117, 399, 542
TaqI TCGA 5 cut(s) 65, 279, 368, 500, 585
TasI AATT 2 cut(s) 274, 580
TauI GCSGC 5 cut(s) 325, 457, 649, 691, 697
TfiI GAWTC 4 cut(s) 187, 201, 504, 630
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 4 cut(s) 325, 597, 691, 731
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 622
TspGWI ACGGA 1 cut(s) 535
VpaK11BI GGWCC 2 cut(s) 18, 175
XceI RCATGY 1 cut(s) 79
XmiI GTMKAC 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.