RLG00000011619

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0011527
Physical Location & Seq
Forward (+)
11056190 .. 11056927
738 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011619

Sequence Viewer

Length: 738 bp
ATGTGGAACGAGAATGGGACTGTATCGCCCACGGGGAACAATCTGAAGGAGAAGCGTCACCGATCGATGATGTGCATGCCGGTGTGTTTCTCCAGCTCCACGCATCCTTTTGACGTTTTGGACGACGAGGACTACAGGACTCCGCGGTCGCCGGTGATGCCGGAGATTAGGGACCGATGCCGGAATCTCATTAACAGAATCGGAGGAGGGAGGCGCAGGAGGGCGTCGTCGGCAGATTTCAGCTACGACGCTTCCAGCTACGCGCTCAATTTCGAGGACGACACCACACGCGCCGATGACATCCTCTTCCGGTCGCGGCTGCCGTCCTCCGCCTCCGGGAGCCTGACCCCGCCGGAGAAGTCGACCACGAGCCGGCACATTCTGGACGACGTTCTGGAGGAAGATGAGGACAACCGGAGCTGGAGGAGAAACCAAATGAGGCGGTCGCCGCCTGAGGACAAGGAGAAGAGTACGAAGAGCCGGAACATGGTGTCGAGAATCGGACTGCGGGGACGGAACCGCCACTCTTCCACGTCGGCCGACTTCAGCTACGAGCCGTCCAGCTACGCGCTTAATTTCGAAGACGATAGCAGCAAAGCCGACGAGCTTGGCCCTGGCAATGGATTCATGGGGCGTTTGCCGCACTCGCCTTTGCCGTCGGTTCAGAGTTCGGCATCACCGCCGCTGCCGCCTGCAAAGTGTTCGGCGGTGCGCCCAGAGATTGCTGCCTTTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

27.49

Weight (kDa)

7.67

Isoelectric Point (pI)

85.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 145
AccI GTMKAC 1 cut(s) 362
AccII CGCG 5 cut(s) 145, 263, 291, 316, 569
AcoI YGGCCR 1 cut(s) 537
AcuI CTGAAG 2 cut(s) 65, 529
AcyI GRCGYC 1 cut(s) 224
AfaI GTAC 1 cut(s) 472
AfiI CCNNNNNNNGG 4 cut(s) 336, 372, 487, 620
AjiI CACGTC 1 cut(s) 534
AjnI CCWGG 1 cut(s) 613
AluBI AGCT 7 cut(s) 96, 243, 258, 420, 549, 564, 607
AluI AGCT 7 cut(s) 96, 243, 258, 420, 549, 564, 607
AoxI GGCC 2 cut(s) 537, 610
ApeKI GCWGC 4 cut(s) 319, 591, 685, 725
AspLEI GCGC 5 cut(s) 216, 265, 293, 571, 714
AspS9I GGNCC 2 cut(s) 172, 611
AsuC2I CCSGG 1 cut(s) 337
AsuHPI GGTGA 3 cut(s) 50, 166, 669
AsuII TTCGAA 1 cut(s) 579
AvaII GGWCC 1 cut(s) 172
AxyI CCTNAGG 1 cut(s) 453
BauI CACGAG 1 cut(s) 367
BbsI GAAGAC 1 cut(s) 588
BbvI GCAGC 4 cut(s) 306, 603, 672, 712
BceAI ACGGC 3 cut(s) 307, 541, 640
BcgI CGANNNNNNTGC 2 cut(s) 684, 718
BciT130I CCWGG 1 cut(s) 615
BcnI CCSGG 1 cut(s) 337
BfmI CTRYAG 1 cut(s) 133
BisI GCNGC 9 cut(s) 317, 320, 449, 592, 641, 683, 686, 689, 726
BlsI GCNGC 9 cut(s) 318, 321, 450, 593, 642, 684, 687, 690, 727
Bme1390I CCNGG 2 cut(s) 337, 615
Bme18I GGWCC 1 cut(s) 172
BmgBI CACGTC 1 cut(s) 534
BmgT120I GGNCC 2 cut(s) 172, 611
BmiI GGNNCC 3 cut(s) 173, 341, 518
BmrFI CCNGG 2 cut(s) 337, 615
BmsI GCATC 4 cut(s) 112, 147, 167, 683
BpiI GAAGAC 1 cut(s) 588
BpmI CTGGAG 3 cut(s) 76, 416, 442
Bpu14I TTCGAA 1 cut(s) 579
BpuMI CCSGG 1 cut(s) 337
Bsa29I ATCGAT 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 224
BsaJI CCNNGG 3 cut(s) 30, 143, 613
BsaWI WCCGGW 2 cut(s) 309, 414
Bsc4I CCNNNNNNNGG 4 cut(s) 336, 372, 487, 620
Bse118I RCCGGY 3 cut(s) 79, 151, 372
Bse21I CCTNAGG 1 cut(s) 453
Bse3DI GCAATG 1 cut(s) 625
BseBI CCWGG 1 cut(s) 615
BseCI ATCGAT 1 cut(s) 65
BseDI CCNNGG 3 cut(s) 30, 143, 613
BseGI GGATG 2 cut(s) 103, 300
BseLI CCNNNNNNNGG 4 cut(s) 336, 372, 487, 620
BseMI GCAATG 1 cut(s) 625
BseMII CTCAG 1 cut(s) 444
BseRI GAGGAG 2 cut(s) 219, 439
BseX3I CGGCCG 1 cut(s) 537
BseXI GCAGC 4 cut(s) 306, 603, 672, 712
Bsh1236I CGCG 5 cut(s) 145, 263, 291, 316, 569
Bsh1285I CGRYCG 5 cut(s) 65, 149, 314, 446, 540
BshFI GGCC 2 cut(s) 539, 612
BshVI ATCGAT 1 cut(s) 65
BsiEI CGRYCG 5 cut(s) 65, 149, 314, 446, 540
BslFI GGGAC 3 cut(s) 31, 185, 525
BslI CCNNNNNNNGG 4 cut(s) 336, 372, 487, 620
BsmFI GGGAC 3 cut(s) 31, 185, 525
BsnI GGCC 2 cut(s) 539, 612
Bsp119I TTCGAA 1 cut(s) 579
Bsp143I GATC 1 cut(s) 62
BspANI GGCC 2 cut(s) 539, 612
BspCNI CTCAG 1 cut(s) 445
BspDI ATCGAT 1 cut(s) 65
BspFNI CGCG 5 cut(s) 145, 263, 291, 316, 569
BspLI GGNNCC 3 cut(s) 173, 341, 518
BspQI GCTCTTC 1 cut(s) 470
BspT104I TTCGAA 1 cut(s) 579
BsrDI GCAATG 1 cut(s) 625
BsrFI RCCGGY 3 cut(s) 79, 151, 372
BssAI RCCGGY 3 cut(s) 79, 151, 372
BssECI CCNNGG 3 cut(s) 30, 143, 613
BssMI GATC 1 cut(s) 62
BssNI GRCGYC 1 cut(s) 224
BssSI CACGAG 1 cut(s) 367
Bst2BI CACGAG 1 cut(s) 367
Bst2UI CCWGG 1 cut(s) 615
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 4 cut(s) 311, 461, 470, 532
BstACI GRCGYC 1 cut(s) 224
BstBI TTCGAA 1 cut(s) 579
BstC8I GCNNGC 3 cut(s) 77, 374, 693
BstDEI CTNAG 1 cut(s) 453
BstDSI CCRYGG 2 cut(s) 30, 143
BstF5I GGATG 2 cut(s) 103, 300
BstFNI CGCG 5 cut(s) 145, 263, 291, 316, 569
BstHHI GCGC 5 cut(s) 216, 265, 293, 571, 714
BstKTI GATC 1 cut(s) 65
BstMBI GATC 1 cut(s) 62
BstMCI CGRYCG 5 cut(s) 65, 149, 314, 446, 540
BstMWI GCNNNNNNNGC 6 cut(s) 157, 230, 448, 640, 646, 688
BstNI CCWGG 1 cut(s) 615
BstNSI RCATGY 1 cut(s) 79
BstSCI CCNGG 2 cut(s) 335, 613
BstSFI CTRYAG 1 cut(s) 133
BstUI CGCG 5 cut(s) 145, 263, 291, 316, 569
BstV1I GCAGC 4 cut(s) 306, 603, 672, 712
BstV2I GAAGAC 1 cut(s) 588
BstZI CGGCCG 1 cut(s) 537
Bsu15I ATCGAT 1 cut(s) 65
Bsu36I CCTNAGG 1 cut(s) 453
BsuRI GGCC 2 cut(s) 539, 612
BsuTUI ATCGAT 1 cut(s) 65
BtgI CCRYGG 2 cut(s) 30, 143
BtrI CACGTC 1 cut(s) 534
BtsCI GGATG 2 cut(s) 103, 300
Cac8I GCNNGC 3 cut(s) 77, 374, 693
CfoI GCGC 5 cut(s) 216, 265, 293, 571, 714
Cfr10I RCCGGY 3 cut(s) 79, 151, 372
Cfr13I GGNCC 2 cut(s) 172, 611
Cfr42I CCGCGG 1 cut(s) 146
ClaI ATCGAT 1 cut(s) 65
CseI GACGC 3 cut(s) 44, 213, 257
Csp6I GTAC 1 cut(s) 471
CviAII CATG 3 cut(s) 76, 487, 628
CviQI GTAC 1 cut(s) 471
DdeI CTNAG 1 cut(s) 453
DpnI GATC 1 cut(s) 64
DpnII GATC 1 cut(s) 62
DrdI GACNNNNNNGTC 1 cut(s) 145
DseDI GACNNNNNNGTC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 537
EagI CGGCCG 1 cut(s) 537
Eam1104I CTCTTC 4 cut(s) 311, 461, 470, 532
EarI CTCTTC 4 cut(s) 311, 461, 470, 532
EciI GGCGGA 1 cut(s) 319
EclXI CGGCCG 1 cut(s) 537
Eco47I GGWCC 1 cut(s) 172
Eco52I CGGCCG 1 cut(s) 537
Eco57I CTGAAG 2 cut(s) 65, 529
Eco81I CCTNAGG 1 cut(s) 453
EcoRII CCWGG 1 cut(s) 613
FaeI CATG 3 cut(s) 79, 490, 631
FaiI YATR 3 cut(s) 77, 488, 629
FaqI GGGAC 3 cut(s) 31, 185, 525
FatI CATG 3 cut(s) 75, 486, 627
FauI CCCGC 2 cut(s) 357, 501
FblI GTMKAC 1 cut(s) 362
Fnu4HI GCNGC 9 cut(s) 317, 320, 449, 592, 641, 683, 686, 689, 726
FokI GGATG 2 cut(s) 90, 287
Fsp4HI GCNGC 9 cut(s) 317, 320, 449, 592, 641, 683, 686, 689, 726
GlaI GCGC 5 cut(s) 215, 264, 292, 570, 713
GluI GCNGC 9 cut(s) 317, 320, 449, 592, 641, 683, 686, 689, 726
GsuI CTGGAG 3 cut(s) 76, 416, 442
HaeIII GGCC 2 cut(s) 539, 612
HgaI GACGC 3 cut(s) 44, 213, 257
HhaI GCGC 5 cut(s) 216, 265, 293, 571, 714
Hin1I GRCGYC 1 cut(s) 224
Hin1II CATG 3 cut(s) 79, 490, 631
Hin6I GCGC 5 cut(s) 214, 263, 291, 569, 712
HinP1I GCGC 5 cut(s) 214, 263, 291, 569, 712
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HinfI GANTC 5 cut(s) 139, 184, 198, 498, 624
HphI GGTGA 3 cut(s) 50, 166, 669
Hpy166II GTNNAC 1 cut(s) 363
Hpy188I TCNGA 4 cut(s) 45, 203, 503, 666
Hpy188III TCNNGA 3 cut(s) 383, 395, 495
Hpy8I GTNNAC 1 cut(s) 363
Hpy99I CGWCG 8 cut(s) 128, 229, 232, 251, 392, 538, 605, 661
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 3 cut(s) 114, 390, 533
HpyCH4V TGCA 2 cut(s) 75, 695
HpyF10VI GCNNNNNNNGC 6 cut(s) 157, 230, 448, 640, 646, 688
HpyF3I CTNAG 1 cut(s) 453
HpySE526I ACGT 3 cut(s) 114, 390, 533
Hsp92I GRCGYC 1 cut(s) 224
Hsp92II CATG 3 cut(s) 79, 490, 631
HspAI GCGC 5 cut(s) 214, 263, 291, 569, 712
KroI GCCGGC 1 cut(s) 372
KroNI GCCGGC 1 cut(s) 374
KspI CCGCGG 1 cut(s) 146
Kzo9I GATC 1 cut(s) 62
LguI GCTCTTC 1 cut(s) 470
LmnI GCTCC 3 cut(s) 101, 339, 417
Lsp1109I GCAGC 4 cut(s) 306, 603, 672, 712
LweI GCATC 4 cut(s) 112, 147, 167, 683
MaeII ACGT 3 cut(s) 114, 390, 533
MaeIII GTNAC 1 cut(s) 56
MalI GATC 1 cut(s) 64
MboI GATC 1 cut(s) 62
MboII GAAGA 6 cut(s) 298, 413, 478, 487, 519, 593
MluCI AATT 2 cut(s) 268, 574
MlyI GAGTC 1 cut(s) 133
MroNI GCCGGC 1 cut(s) 372
MseI TTAA 2 cut(s) 192, 573
MslI CAYNNNNRTG 1 cut(s) 80
MspA1I CMGCKG 2 cut(s) 145, 685
MspR9I CCNGG 2 cut(s) 337, 615
MvaI CCWGG 1 cut(s) 615
MvnI CGCG 5 cut(s) 145, 263, 291, 316, 569
MwoI GCNNNNNNNGC 6 cut(s) 157, 230, 448, 640, 646, 688
NaeI GCCGGC 1 cut(s) 374
NciI CCSGG 1 cut(s) 337
NdeII GATC 1 cut(s) 62
NgoMIV GCCGGC 1 cut(s) 372
NlaIII CATG 3 cut(s) 79, 490, 631
NlaIV GGNNCC 3 cut(s) 173, 341, 518
NmuCI GTSAC 1 cut(s) 56
NspI RCATGY 1 cut(s) 79
NspV TTCGAA 1 cut(s) 579
PaeI GCATGC 1 cut(s) 79
PciSI GCTCTTC 1 cut(s) 470
PcsI WCGNNNNNNNCGW 3 cut(s) 120, 320, 653
PdiI GCCGGC 1 cut(s) 374
PfeI GAWTC 4 cut(s) 184, 198, 498, 624
PfoI TCCNGGA 1 cut(s) 335
PkrI GCNGC 9 cut(s) 318, 321, 450, 593, 642, 684, 687, 690, 727
Ple19I CGATCG 1 cut(s) 65
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 613
PspGI CCWGG 1 cut(s) 613
PspN4I GGNNCC 3 cut(s) 173, 341, 518
PspPI GGNCC 2 cut(s) 172, 611
PvuI CGATCG 1 cut(s) 65
RsaI GTAC 1 cut(s) 472
RsaNI GTAC 1 cut(s) 471
RseI CAYNNNNRTG 1 cut(s) 80
SacII CCGCGG 1 cut(s) 146
SalI GTCGAC 1 cut(s) 361
SapI GCTCTTC 1 cut(s) 470
SaqAI TTAA 2 cut(s) 192, 573
SatI GCNGC 9 cut(s) 317, 320, 449, 592, 641, 683, 686, 689, 726
Sau3AI GATC 1 cut(s) 62
Sau96I GGNCC 2 cut(s) 172, 611
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 2 cut(s) 337, 615
SfaNI GCATC 4 cut(s) 112, 147, 167, 683
SfcI CTRYAG 1 cut(s) 133
Sfr303I CCGCGG 1 cut(s) 146
SfuI TTCGAA 1 cut(s) 579
SgrAI CRCCGGYG 1 cut(s) 151
SgrBI CCGCGG 1 cut(s) 146
SinI GGWCC 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 80
SphI GCATGC 1 cut(s) 79
Sse9I AATT 2 cut(s) 268, 574
StyD4I CCNGG 2 cut(s) 335, 613
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 3 cut(s) 117, 393, 536
TaqI TCGA 5 cut(s) 65, 273, 362, 494, 579
TaqII GACCGA 1 cut(s) 189
TasI AATT 2 cut(s) 268, 574
TauI GCSGC 5 cut(s) 319, 451, 643, 685, 691
TfiI GAWTC 4 cut(s) 184, 198, 498, 624
Tru1I TTAA 2 cut(s) 192, 573
Tru9I TTAA 2 cut(s) 192, 573
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 4 cut(s) 319, 591, 685, 725
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 616
TspGWI ACGGA 1 cut(s) 529
VpaK11BI GGWCC 1 cut(s) 172
XceI RCATGY 1 cut(s) 79
XmiI GTMKAC 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.