Rmu_sc0013249.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013249.1
OG0011527
Physical Location & Seq
Reverse (-)
4430 .. 5122
693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013249.1_g000003.1.cds

Sequence Viewer

Length: 693 bp
atgtggaacgacaacgggaccgtatcgccgacggggaacaatctgaaggagaagcgtcaccgatcgatgatgtgcatgccggtgtgtttctccagctccacgcatccttttgacgtgttggacgacgaggactacatcaggactccgcggtcgccggtgatgcctgagatcagggaccggtgccggaatctcattaacagaatcggaggtgggaggcgcaggagggcgtcgtcggcagacttcagctacgacgcttccagctacgccctcaatttcgaggacgacaccacacgcgccgacgacatcctcttccggtcgcggctgccttcctcctcctccgggagcctgaccccgccggagaagtcgaccacgagccggcacattctggacgacgttctggaggaagatgaggacaaccggagctggaggagaaaccaaatgaggcagtcgccgctggagaagagtacgaagagccggaacatggtgtcgagaatcggactgcggggacggaaccgccactcgtccacgtcggccgacttcagctacgagccgtccagctacgcgctcaatttcgaagacgatagcagcaaagccgacgagcttggccctgacaatggattcatggcgcgttcgggggggggggggggggggggtaaaacgcagtcgtttggcgctcggatagaggctaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

25.76

Weight (kDa)

7.74

Isoelectric Point (pI)

83.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 148
AccB1I GGYRCC 1 cut(s) 180
AccI GTMKAC 1 cut(s) 365
AccII CGCG 5 cut(s) 148, 294, 319, 563, 628
AciI CCGC 7 cut(s) 146, 148, 319, 353, 452, 502, 514
AcoI YGGCCR 1 cut(s) 531
AcuI CTGAAG 3 cut(s) 65, 226, 523
AcyI GRCGYC 1 cut(s) 227
AfaI GTAC 1 cut(s) 466
AfiI CCNNNNNNNGG 4 cut(s) 339, 375, 481, 614
AflIII ACRYGT 1 cut(s) 114
AgeI ACCGGT 1 cut(s) 177
AjiI CACGTC 2 cut(s) 115, 528
AluBI AGCT 7 cut(s) 96, 246, 261, 423, 543, 558, 601
AluI AGCT 7 cut(s) 96, 246, 261, 423, 543, 558, 601
AoxI GGCC 2 cut(s) 531, 604
ApeKI GCWGC 2 cut(s) 322, 585
AsiGI ACCGGT 1 cut(s) 177
AspLEI GCGC 5 cut(s) 219, 296, 565, 628, 674
AspS9I GGNCC 3 cut(s) 18, 175, 605
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 2 cut(s) 50, 169
AsuII TTCGAA 1 cut(s) 573
AvaII GGWCC 2 cut(s) 18, 175
BanI GGYRCC 1 cut(s) 180
BauI CACGAG 1 cut(s) 370
BbsI GAAGAC 1 cut(s) 582
BbvI GCAGC 2 cut(s) 309, 597
BceAI ACGGC 1 cut(s) 535
BcnI CCSGG 1 cut(s) 340
BfoI RGCGCY 1 cut(s) 675
BisI GCNGC 4 cut(s) 320, 323, 452, 586
BlsI GCNGC 4 cut(s) 321, 324, 453, 587
Bme1390I CCNGG 1 cut(s) 340
Bme18I GGWCC 2 cut(s) 18, 175
BmgBI CACGTC 2 cut(s) 115, 528
BmgT120I GGNCC 3 cut(s) 18, 175, 605
BmiI GGNNCC 5 cut(s) 19, 176, 182, 344, 512
BmrFI CCNGG 1 cut(s) 340
BmsI GCATC 2 cut(s) 112, 150
BpiI GAAGAC 1 cut(s) 582
BpmI CTGGAG 4 cut(s) 76, 419, 445, 476
Bpu14I TTCGAA 1 cut(s) 573
BpuMI CCSGG 1 cut(s) 340
Bsa29I ATCGAT 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 146
BsaWI WCCGGW 3 cut(s) 177, 312, 417
Bsc4I CCNNNNNNNGG 4 cut(s) 339, 375, 481, 614
Bse118I RCCGGY 4 cut(s) 79, 154, 177, 375
BseCI ATCGAT 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 146
BseGI GGATG 2 cut(s) 103, 303
BseLI CCNNNNNNNGG 4 cut(s) 339, 375, 481, 614
BseMII CTCAG 1 cut(s) 156
BseRI GAGGAG 3 cut(s) 322, 325, 442
BseX3I CGGCCG 1 cut(s) 531
BseXI GCAGC 2 cut(s) 309, 597
Bsh1236I CGCG 5 cut(s) 148, 294, 319, 563, 628
Bsh1285I CGRYCG 4 cut(s) 65, 152, 317, 534
BshFI GGCC 2 cut(s) 533, 606
BshNI GGYRCC 1 cut(s) 180
BshTI ACCGGT 1 cut(s) 177
BshVI ATCGAT 1 cut(s) 65
BsiEI CGRYCG 4 cut(s) 65, 152, 317, 534
BslFI GGGAC 3 cut(s) 31, 188, 519
BslI CCNNNNNNNGG 4 cut(s) 339, 375, 481, 614
BsmFI GGGAC 3 cut(s) 31, 188, 519
BsnI GGCC 2 cut(s) 533, 606
Bsp119I TTCGAA 1 cut(s) 573
Bsp143I GATC 2 cut(s) 62, 168
BspACI CCGC 7 cut(s) 146, 148, 319, 353, 452, 502, 514
BspANI GGCC 2 cut(s) 533, 606
BspCNI CTCAG 1 cut(s) 157
BspDI ATCGAT 1 cut(s) 65
BspFNI CGCG 5 cut(s) 148, 294, 319, 563, 628
BspLI GGNNCC 5 cut(s) 19, 176, 182, 344, 512
BspQI GCTCTTC 1 cut(s) 464
BspT104I TTCGAA 1 cut(s) 573
BspT107I GGYRCC 1 cut(s) 180
BsrFI RCCGGY 4 cut(s) 79, 154, 177, 375
BssAI RCCGGY 4 cut(s) 79, 154, 177, 375
BssECI CCNNGG 1 cut(s) 146
BssMI GATC 2 cut(s) 62, 168
BssNI GRCGYC 1 cut(s) 227
BssSI CACGAG 1 cut(s) 370
Bst2BI CACGAG 1 cut(s) 370
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 3 cut(s) 314, 455, 464
BstACI GRCGYC 1 cut(s) 227
BstBI TTCGAA 1 cut(s) 573
BstC8I GCNNGC 2 cut(s) 77, 377
BstDEI CTNAG 1 cut(s) 165
BstDSI CCRYGG 1 cut(s) 146
BstF5I GGATG 2 cut(s) 103, 303
BstFNI CGCG 5 cut(s) 148, 294, 319, 563, 628
BstH2I RGCGCY 1 cut(s) 675
BstHHI GCGC 5 cut(s) 219, 296, 565, 628, 674
BstKTI GATC 2 cut(s) 65, 171
BstMBI GATC 2 cut(s) 62, 168
BstMCI CGRYCG 4 cut(s) 65, 152, 317, 534
BstMWI GCNNNNNNNGC 3 cut(s) 160, 233, 451
BstNSI RCATGY 1 cut(s) 79
BstSCI CCNGG 1 cut(s) 338
BstUI CGCG 5 cut(s) 148, 294, 319, 563, 628
BstV1I GCAGC 2 cut(s) 309, 597
BstV2I GAAGAC 1 cut(s) 582
BstZI CGGCCG 1 cut(s) 531
Bsu15I ATCGAT 1 cut(s) 65
BsuRI GGCC 2 cut(s) 533, 606
BsuTUI ATCGAT 1 cut(s) 65
BtgI CCRYGG 1 cut(s) 146
BtrI CACGTC 2 cut(s) 115, 528
BtsCI GGATG 2 cut(s) 103, 303
Cac8I GCNNGC 2 cut(s) 77, 377
CfoI GCGC 5 cut(s) 219, 296, 565, 628, 674
Cfr10I RCCGGY 4 cut(s) 79, 154, 177, 375
Cfr13I GGNCC 3 cut(s) 18, 175, 605
Cfr42I CCGCGG 1 cut(s) 149
ClaI ATCGAT 1 cut(s) 65
CseI GACGC 3 cut(s) 44, 216, 260
Csp6I GTAC 1 cut(s) 465
CspAI ACCGGT 1 cut(s) 177
CviAII CATG 3 cut(s) 76, 481, 622
CviQI GTAC 1 cut(s) 465
DdeI CTNAG 1 cut(s) 165
DpnI GATC 2 cut(s) 64, 170
DpnII GATC 2 cut(s) 62, 168
DrdI GACNNNNNNGTC 1 cut(s) 148
DseDI GACNNNNNNGTC 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 531
EagI CGGCCG 1 cut(s) 531
Eam1104I CTCTTC 3 cut(s) 314, 455, 464
EarI CTCTTC 3 cut(s) 314, 455, 464
EclXI CGGCCG 1 cut(s) 531
Eco47I GGWCC 2 cut(s) 18, 175
Eco52I CGGCCG 1 cut(s) 531
Eco57I CTGAAG 3 cut(s) 65, 226, 523
FaeI CATG 3 cut(s) 79, 484, 625
FaiI YATR 3 cut(s) 77, 482, 623
FaqI GGGAC 3 cut(s) 31, 188, 519
FatI CATG 3 cut(s) 75, 480, 621
FauI CCCGC 2 cut(s) 360, 495
FblI GTMKAC 1 cut(s) 365
Fnu4HI GCNGC 4 cut(s) 320, 323, 452, 586
FokI GGATG 2 cut(s) 90, 290
Fsp4HI GCNGC 4 cut(s) 320, 323, 452, 586
GlaI GCGC 5 cut(s) 218, 295, 564, 627, 673
GluI GCNGC 4 cut(s) 320, 323, 452, 586
GsuI CTGGAG 4 cut(s) 76, 419, 445, 476
HaeII RGCGCY 1 cut(s) 675
HaeIII GGCC 2 cut(s) 533, 606
HgaI GACGC 3 cut(s) 44, 216, 260
HhaI GCGC 5 cut(s) 219, 296, 565, 628, 674
Hin1I GRCGYC 1 cut(s) 227
Hin1II CATG 3 cut(s) 79, 484, 625
Hin6I GCGC 5 cut(s) 217, 294, 563, 626, 672
HinP1I GCGC 5 cut(s) 217, 294, 563, 626, 672
HincII GTYRAC 1 cut(s) 366
HindII GTYRAC 1 cut(s) 366
HinfI GANTC 5 cut(s) 142, 187, 201, 492, 618
HphI GGTGA 2 cut(s) 50, 169
Hpy166II GTNNAC 2 cut(s) 366, 525
Hpy188I TCNGA 4 cut(s) 45, 206, 497, 678
Hpy188III TCNNGA 4 cut(s) 139, 386, 398, 489
Hpy8I GTNNAC 2 cut(s) 366, 525
Hpy99I CGWCG 9 cut(s) 34, 128, 232, 235, 254, 302, 395, 532, 599
HpyAV CCTTC 2 cut(s) 40, 336
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 3 cut(s) 114, 393, 527
HpyCH4V TGCA 1 cut(s) 75
HpyF10VI GCNNNNNNNGC 3 cut(s) 160, 233, 451
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 3 cut(s) 114, 393, 527
Hsp92I GRCGYC 1 cut(s) 227
Hsp92II CATG 3 cut(s) 79, 484, 625
HspAI GCGC 5 cut(s) 217, 294, 563, 626, 672
KroI GCCGGC 1 cut(s) 375
KroNI GCCGGC 1 cut(s) 377
KspI CCGCGG 1 cut(s) 149
Kzo9I GATC 2 cut(s) 62, 168
LguI GCTCTTC 1 cut(s) 464
LmnI GCTCC 3 cut(s) 101, 342, 420
Lsp1109I GCAGC 2 cut(s) 309, 597
LweI GCATC 2 cut(s) 112, 150
MaeII ACGT 3 cut(s) 114, 393, 527
MaeIII GTNAC 1 cut(s) 56
MalI GATC 2 cut(s) 64, 170
MboI GATC 2 cut(s) 62, 168
MboII GAAGA 5 cut(s) 301, 416, 472, 481, 587
MluCI AATT 2 cut(s) 271, 568
MlyI GAGTC 1 cut(s) 136
MmeI TCCRAC 1 cut(s) 99
MroNI GCCGGC 1 cut(s) 375
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 80
MspA1I CMGCKG 2 cut(s) 148, 454
MspR9I CCNGG 1 cut(s) 340
MvnI CGCG 5 cut(s) 148, 294, 319, 563, 628
MwoI GCNNNNNNNGC 3 cut(s) 160, 233, 451
NaeI GCCGGC 1 cut(s) 377
NciI CCSGG 1 cut(s) 340
NdeII GATC 2 cut(s) 62, 168
NgoMIV GCCGGC 1 cut(s) 375
NlaIII CATG 3 cut(s) 79, 484, 625
NlaIV GGNNCC 5 cut(s) 19, 176, 182, 344, 512
NmuCI GTSAC 1 cut(s) 56
NspI RCATGY 1 cut(s) 79
NspV TTCGAA 1 cut(s) 573
PaeI GCATGC 1 cut(s) 79
PciSI GCTCTTC 1 cut(s) 464
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PdiI GCCGGC 1 cut(s) 377
PfeI GAWTC 4 cut(s) 187, 201, 492, 618
PfoI TCCNGGA 1 cut(s) 338
PinAI ACCGGT 1 cut(s) 177
PkrI GCNGC 4 cut(s) 321, 324, 453, 587
Ple19I CGATCG 1 cut(s) 65
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PspN4I GGNNCC 5 cut(s) 19, 176, 182, 344, 512
PspPI GGNCC 3 cut(s) 18, 175, 605
PvuI CGATCG 1 cut(s) 65
RsaI GTAC 1 cut(s) 466
RsaNI GTAC 1 cut(s) 465
RseI CAYNNNNRTG 1 cut(s) 80
SacII CCGCGG 1 cut(s) 149
SalI GTCGAC 1 cut(s) 364
SapI GCTCTTC 1 cut(s) 464
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 4 cut(s) 320, 323, 452, 586
Sau3AI GATC 2 cut(s) 62, 168
Sau96I GGNCC 3 cut(s) 18, 175, 605
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 340
SfaNI GCATC 2 cut(s) 112, 150
Sfr303I CCGCGG 1 cut(s) 149
SfuI TTCGAA 1 cut(s) 573
SgrAI CRCCGGYG 1 cut(s) 154
SgrBI CCGCGG 1 cut(s) 149
SinI GGWCC 2 cut(s) 18, 175
SmiMI CAYNNNNRTG 1 cut(s) 80
SphI GCATGC 1 cut(s) 79
Sse9I AATT 2 cut(s) 271, 568
SsiI CCGC 7 cut(s) 146, 148, 319, 353, 452, 502, 514
StyD4I CCNGG 1 cut(s) 338
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 3 cut(s) 117, 396, 530
TaqI TCGA 5 cut(s) 65, 276, 365, 488, 573
TasI AATT 2 cut(s) 271, 568
TauI GCSGC 2 cut(s) 322, 454
TfiI GAWTC 4 cut(s) 187, 201, 492, 618
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 2 cut(s) 322, 585
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 610
TspGWI ACGGA 1 cut(s) 523
VpaK11BI GGWCC 2 cut(s) 18, 175
XceI RCATGY 1 cut(s) 79
XmiI GTMKAC 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.