SecA preprotein cross-linking domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G21650 AT1G21650 AT1G21650 |
| fragaria_vesca | FvH4_2g27750 |
| malus_domestica | MD00G1100600.v1.1 |
| prunus_persica | Prupe.1G490400_v2.0.a1 |
| pyrus_communis | pycom15g30570 |
| rosa_chinensis | RchiOBHm_Chr6g0296621 |
| rosa_laevigata | RLG00000011676 |
| rosa_multiflora | Rmu_sc0001741.1_g000019 |
| rosa_roxburghii | Rroxscaffold_7G00171330 Rroxscaffold_7G00178770 |
| rosa_rugosa | Rorug06G0263700 |
| rosa_samantha | Rh6AG375100 Rh6CG388700 |
| rosa_wichuraiana | Rw6G032720 Rw6G032810 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1485 |
| Acc65I | GGTACC | 1 cut(s) | 2814 |
| AccB1I | GGYRCC | 1 cut(s) | 2814 |
| AciI | CCGC | 7 cut(s) | 253, 461, 1595, 2723, 2746, 2839, 3002 |
| AclI | AACGTT | 2 cut(s) | 512, 2770 |
| AclWI | GGATC | 3 cut(s) | 681, 1043, 2197 |
| AcoI | YGGCCR | 1 cut(s) | 791 |
| AcsI | RAATTY | 3 cut(s) | 181, 288, 1519 |
| AcuI | CTGAAG | 8 cut(s) | 696, 1008, 1347, 1565, 2066, 2103, 2561, 2719 |
| AcyI | GRCGYC | 1 cut(s) | 1486 |
| AfaI | GTAC | 9 cut(s) | 1374, 1529, 2003, 2061, 2360, 2412, 2492, 2816, 2846 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 382, 2306, 2598 |
| AflII | CTTAAG | 1 cut(s) | 173 |
| AflIII | ACRYGT | 1 cut(s) | 1470 |
| AhlI | ACTAGT | 1 cut(s) | 218 |
| AjnI | CCWGG | 1 cut(s) | 2185 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 3141 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1457, 1489 |
| Alw21I | GWGCWC | 3 cut(s) | 266, 1508, 2759 |
| Alw26I | GTCTC | 9 cut(s) | 23, 123, 143, 174, 289, 353, 933, 2072, 2139 |
| AlwI | GGATC | 3 cut(s) | 681, 1043, 2197 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1934, 2332 |
| AoxI | GGCC | 8 cut(s) | 122, 649, 791, 1014, 1583, 2011, 2334, 2730 |
| ApeKI | GCWGC | 5 cut(s) | 407, 530, 893, 911, 2822 |
| ApoI | RAATTY | 3 cut(s) | 181, 288, 1519 |
| AseI | ATTAAT | 1 cut(s) | 2346 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 561, 1337, 1349, 1449, 2360, 3156 |
| Asp718I | GGTACC | 1 cut(s) | 2814 |
| AspLEI | GCGC | 1 cut(s) | 547 |
| AspS9I | GGNCC | 7 cut(s) | 477, 649, 1015, 1823, 2012, 2335, 2968 |
| AsuHPI | GGTGA | 9 cut(s) | 70, 292, 566, 2192, 2218, 2321, 2468, 2693, 2953 |
| AsuII | TTCGAA | 1 cut(s) | 1877 |
| AvaII | GGWCC | 3 cut(s) | 477, 1823, 2968 |
| BalI | TGGCCA | 1 cut(s) | 793 |
| BanI | GGYRCC | 1 cut(s) | 2814 |
| BanII | GRGCYC | 3 cut(s) | 266, 285, 2759 |
| BauI | CACGAG | 1 cut(s) | 1752 |
| BbsI | GAAGAC | 3 cut(s) | 67, 182, 2096 |
| Bbv12I | GWGCWC | 3 cut(s) | 266, 1508, 2759 |
| BbvCI | CCTCAGC | 1 cut(s) | 381 |
| BbvI | GCAGC | 5 cut(s) | 394, 517, 880, 898, 2809 |
| BccI | CCATC | 8 cut(s) | 467, 607, 783, 1006, 1772, 1834, 2979, 3050 |
| BceAI | ACGGC | 1 cut(s) | 1598 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 347, 381, 2117, 2151 |
| BciT130I | CCWGG | 1 cut(s) | 2187 |
| BcoDI | GTCTC | 9 cut(s) | 23, 123, 143, 174, 289, 353, 933, 2072, 2139 |
| BcuI | ACTAGT | 1 cut(s) | 218 |
| BfaI | CTAG | 5 cut(s) | 219, 882, 1059, 1688, 2829 |
| BfmI | CTRYAG | 4 cut(s) | 128, 327, 694, 2682 |
| BfrI | CTTAAG | 1 cut(s) | 173 |
| BglII | AGATCT | 1 cut(s) | 2686 |
| BisI | GCNGC | 6 cut(s) | 408, 531, 894, 912, 1596, 2823 |
| BlsI | GCNGC | 6 cut(s) | 409, 532, 895, 913, 1597, 2824 |
| BmcAI | AGTACT | 2 cut(s) | 1529, 2360 |
| Bme1390I | CCNGG | 1 cut(s) | 2187 |
| Bme18I | GGWCC | 3 cut(s) | 477, 1823, 2968 |
| BmgT120I | GGNCC | 7 cut(s) | 477, 649, 1015, 1823, 2012, 2335, 2968 |
| BmiI | GGNNCC | 3 cut(s) | 478, 2816, 2969 |
| BmrFI | CCNGG | 1 cut(s) | 2187 |
| BmrI | ACTGGG | 1 cut(s) | 1320 |
| BmsI | GCATC | 5 cut(s) | 592, 880, 2302, 2554, 2896 |
| BmuI | ACTGGG | 1 cut(s) | 1320 |
| BpiI | GAAGAC | 3 cut(s) | 67, 182, 2096 |
| BpmI | CTGGAG | 1 cut(s) | 2983 |
| Bpu10I | CCTNAGC | 1 cut(s) | 381 |
| Bpu14I | TTCGAA | 1 cut(s) | 1877 |
| BpuEI | CTTGAG | 2 cut(s) | 299, 1416 |
| BsaHI | GRCGYC | 1 cut(s) | 1486 |
| BsaJI | CCNNGG | 3 cut(s) | 1052, 2185, 2848 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 77, 107, 1495, 1525, 2551, 2581, 3007, 3037 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 382, 2306, 2598 |
| Bse1I | ACTGG | 8 cut(s) | 556, 1162, 1315, 1361, 1509, 2458, 2488, 2613 |
| Bse3DI | GCAATG | 2 cut(s) | 480, 860 |
| BseBI | CCWGG | 1 cut(s) | 2187 |
| BseDI | CCNNGG | 3 cut(s) | 1052, 2185, 2848 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 382, 2306, 2598 |
| BseMI | GCAATG | 2 cut(s) | 480, 860 |
| BseNI | ACTGG | 8 cut(s) | 556, 1162, 1315, 1361, 1509, 2458, 2488, 2613 |
| BseRI | GAGGAG | 2 cut(s) | 697, 2825 |
| BseXI | GCAGC | 5 cut(s) | 394, 517, 880, 898, 2809 |
| BseYI | CCCAGC | 2 cut(s) | 231, 2475 |
| BsgI | GTGCAG | 2 cut(s) | 464, 879 |
| BshFI | GGCC | 8 cut(s) | 124, 651, 793, 1016, 1585, 2013, 2336, 2732 |
| BshNI | GGYRCC | 1 cut(s) | 2814 |
| BsiHKAI | GWGCWC | 3 cut(s) | 266, 1508, 2759 |
| BsiSI | CCGG | 1 cut(s) | 337 |
| BslFI | GGGAC | 5 cut(s) | 25, 257, 1327, 2981, 3130 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 382, 2306, 2598 |
| BsmAI | GTCTC | 9 cut(s) | 23, 123, 143, 174, 289, 353, 933, 2072, 2139 |
| BsmBI | CGTCTC | 3 cut(s) | 123, 143, 174 |
| BsmFI | GGGAC | 5 cut(s) | 25, 257, 1327, 2981, 3130 |
| BsmI | GAATGC | 1 cut(s) | 1078 |
| BsnI | GGCC | 8 cut(s) | 124, 651, 793, 1016, 1585, 2013, 2336, 2732 |
| Bsp119I | TTCGAA | 1 cut(s) | 1877 |
| Bsp1286I | GDGCHC | 4 cut(s) | 266, 285, 1508, 2759 |
| Bsp143I | GATC | 6 cut(s) | 686, 1048, 1537, 1719, 2189, 2686 |
| BspACI | CCGC | 7 cut(s) | 253, 461, 1595, 2723, 2746, 2839, 3002 |
| BspANI | GGCC | 8 cut(s) | 124, 651, 793, 1016, 1585, 2013, 2336, 2732 |
| BspHI | TCATGA | 1 cut(s) | 469 |
| BspLI | GGNNCC | 3 cut(s) | 478, 2816, 2969 |
| BspMAI | CTGCAG | 1 cut(s) | 331 |
| BspPI | GGATC | 3 cut(s) | 681, 1043, 2197 |
| BspQI | GCTCTTC | 3 cut(s) | 2372, 2747, 2764 |
| BspT104I | TTCGAA | 1 cut(s) | 1877 |
| BspT107I | GGYRCC | 1 cut(s) | 2814 |
| BspTI | CTTAAG | 1 cut(s) | 173 |
| BsrDI | GCAATG | 2 cut(s) | 480, 860 |
| BsrI | ACTGG | 8 cut(s) | 556, 1162, 1315, 1361, 1509, 2458, 2488, 2613 |
| BssECI | CCNNGG | 3 cut(s) | 1052, 2185, 2848 |
| BssMI | GATC | 6 cut(s) | 686, 1048, 1537, 1719, 2189, 2686 |
| BssNI | GRCGYC | 1 cut(s) | 1486 |
| BssSI | CACGAG | 1 cut(s) | 1752 |
| BssT1I | CCWWGG | 1 cut(s) | 2848 |
| Bst2BI | CACGAG | 1 cut(s) | 1752 |
| Bst2UI | CCWGG | 1 cut(s) | 2187 |
| Bst4CI | ACNGT | 8 cut(s) | 577, 646, 1733, 1992, 2066, 2442, 2814, 3106 |
| Bst6I | CTCTTC | 8 cut(s) | 672, 1164, 1169, 1323, 2372, 2747, 2764, 2883 |
| BstACI | GRCGYC | 1 cut(s) | 1486 |
| BstAFI | CTTAAG | 1 cut(s) | 173 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1108 |
| BstBI | TTCGAA | 1 cut(s) | 1877 |
| BstC8I | GCNNGC | 6 cut(s) | 898, 1666, 1710, 2213, 2499, 2778 |
| BstDSI | CCRYGG | 1 cut(s) | 1052 |
| BstEII | GGTNACC | 1 cut(s) | 2180 |
| BstHHI | GCGC | 1 cut(s) | 547 |
| BstKTI | GATC | 6 cut(s) | 689, 1051, 1540, 1722, 2192, 2689 |
| BstMAI | GTCTC | 9 cut(s) | 23, 123, 143, 174, 289, 353, 933, 2072, 2139 |
| BstMBI | GATC | 6 cut(s) | 686, 1048, 1537, 1719, 2189, 2686 |
| BstNI | CCWGG | 1 cut(s) | 2187 |
| BstNSI | RCATGY | 3 cut(s) | 1474, 2426, 2497 |
| BstPI | GGTNACC | 1 cut(s) | 2180 |
| BstSCI | CCNGG | 1 cut(s) | 2185 |
| BstSFI | CTRYAG | 4 cut(s) | 128, 327, 694, 2682 |
| BstV1I | GCAGC | 5 cut(s) | 394, 517, 880, 898, 2809 |
| BstV2I | GAAGAC | 3 cut(s) | 67, 182, 2096 |
| BstX2I | RGATCY | 2 cut(s) | 686, 2686 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2556 |
| BstYI | RGATCY | 2 cut(s) | 686, 2686 |
| BsuRI | GGCC | 8 cut(s) | 124, 651, 793, 1016, 1585, 2013, 2336, 2732 |
| BtgI | CCRYGG | 1 cut(s) | 1052 |
| BtgZI | GCGATG | 1 cut(s) | 611 |
| BtsI | GCAGTG | 2 cut(s) | 775, 2508 |
| BtsIMutI | CAGTG | 6 cut(s) | 775, 1516, 1674, 2062, 2508, 2537 |
| Cac8I | GCNNGC | 6 cut(s) | 898, 1666, 1710, 2213, 2499, 2778 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1934, 2332 |
| CciI | TCATGA | 1 cut(s) | 469 |
| CfoI | GCGC | 1 cut(s) | 547 |
| Cfr13I | GGNCC | 7 cut(s) | 477, 649, 1015, 1823, 2012, 2335, 2968 |
| CseI | GACGC | 4 cut(s) | 122, 156, 419, 1475 |
| Csp6I | GTAC | 9 cut(s) | 1373, 1528, 2002, 2060, 2359, 2411, 2491, 2815, 2845 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1421, 1456 |
| CviQI | GTAC | 9 cut(s) | 1373, 1528, 2002, 2060, 2359, 2411, 2491, 2815, 2845 |
| DpnI | GATC | 6 cut(s) | 688, 1050, 1539, 1721, 2191, 2688 |
| DpnII | GATC | 6 cut(s) | 686, 1048, 1537, 1719, 2189, 2686 |
| DraI | TTTAAA | 1 cut(s) | 225 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1485 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1485 |
| EaeI | YGGCCR | 1 cut(s) | 791 |
| Eam1104I | CTCTTC | 8 cut(s) | 672, 1164, 1169, 1323, 2372, 2747, 2764, 2883 |
| EarI | CTCTTC | 8 cut(s) | 672, 1164, 1169, 1323, 2372, 2747, 2764, 2883 |
| Ecl136II | GAGCTC | 2 cut(s) | 264, 2757 |
| Eco130I | CCWWGG | 1 cut(s) | 2848 |
| Eco147I | AGGCCT | 1 cut(s) | 2732 |
| Eco24I | GRGCYC | 3 cut(s) | 266, 285, 2759 |
| Eco32I | GATATC | 2 cut(s) | 373, 1926 |
| Eco47I | GGWCC | 3 cut(s) | 477, 1823, 2968 |
| Eco53kI | GAGCTC | 2 cut(s) | 264, 2757 |
| Eco57I | CTGAAG | 8 cut(s) | 696, 1008, 1347, 1565, 2066, 2103, 2561, 2719 |
| Eco91I | GGTNACC | 1 cut(s) | 2180 |
| EcoICRI | GAGCTC | 2 cut(s) | 264, 2757 |
| EcoO65I | GGTNACC | 1 cut(s) | 2180 |
| EcoRI | GAATTC | 1 cut(s) | 1519 |
| EcoRII | CCWGG | 1 cut(s) | 2185 |
| EcoRV | GATATC | 2 cut(s) | 373, 1926 |
| EcoT14I | CCWWGG | 1 cut(s) | 2848 |
| EcoT22I | ATGCAT | 2 cut(s) | 1078, 2911 |
| EcoT38I | GRGCYC | 3 cut(s) | 266, 285, 2759 |
| ErhI | CCWWGG | 1 cut(s) | 2848 |
| Esp3I | CGTCTC | 3 cut(s) | 123, 143, 174 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2348, 2380 |
| FaqI | GGGAC | 5 cut(s) | 25, 257, 1327, 2981, 3130 |
| FauNDI | CATATG | 1 cut(s) | 2911 |
| Fnu4HI | GCNGC | 6 cut(s) | 408, 531, 894, 912, 1596, 2823 |
| FriOI | GRGCYC | 3 cut(s) | 266, 285, 2759 |
| Fsp4HI | GCNGC | 6 cut(s) | 408, 531, 894, 912, 1596, 2823 |
| FspBI | CTAG | 5 cut(s) | 219, 882, 1059, 1688, 2829 |
| GlaI | GCGC | 1 cut(s) | 546 |
| GluI | GCNGC | 6 cut(s) | 408, 531, 894, 912, 1596, 2823 |
| GsaI | CCCAGC | 2 cut(s) | 235, 2479 |
| GsuI | CTGGAG | 1 cut(s) | 2983 |
| HaeIII | GGCC | 8 cut(s) | 124, 651, 793, 1016, 1585, 2013, 2336, 2732 |
| HapII | CCGG | 1 cut(s) | 337 |
| HgaI | GACGC | 4 cut(s) | 122, 156, 419, 1475 |
| HhaI | GCGC | 1 cut(s) | 547 |
| Hin1I | GRCGYC | 1 cut(s) | 1486 |
| Hin6I | GCGC | 1 cut(s) | 545 |
| HinP1I | GCGC | 1 cut(s) | 545 |
| HincII | GTYRAC | 6 cut(s) | 271, 829, 984, 1771, 2533, 3102 |
| HindII | GTYRAC | 6 cut(s) | 271, 829, 984, 1771, 2533, 3102 |
| HindIII | AAGCTT | 4 cut(s) | 1416, 2093, 2570, 2640 |
| HpaI | GTTAAC | 2 cut(s) | 271, 2533 |
| HpaII | CCGG | 1 cut(s) | 337 |
| HphI | GGTGA | 9 cut(s) | 70, 292, 566, 2192, 2218, 2321, 2468, 2693, 2953 |
| Hpy188III | TCNNGA | 9 cut(s) | 242, 401, 470, 1342, 1457, 1747, 2690, 2962, 3038 |
| Hpy99I | CGWCG | 1 cut(s) | 138 |
| HpyCH4III | ACNGT | 8 cut(s) | 577, 646, 1733, 1992, 2066, 2442, 2814, 3106 |
| HpyCH4IV | ACGT | 5 cut(s) | 213, 512, 1773, 2770, 3009 |
| HpySE526I | ACGT | 5 cut(s) | 213, 512, 1773, 2770, 3009 |
| Hsp92I | GRCGYC | 1 cut(s) | 1486 |
| HspAI | GCGC | 1 cut(s) | 545 |
| KpnI | GGTACC | 1 cut(s) | 2818 |
| KspAI | GTTAAC | 2 cut(s) | 271, 2533 |
| Kzo9I | GATC | 6 cut(s) | 686, 1048, 1537, 1719, 2189, 2686 |
| LguI | GCTCTTC | 3 cut(s) | 2372, 2747, 2764 |
| LmnI | GCTCC | 4 cut(s) | 68, 1503, 1549, 1765 |
| Lsp1109I | GCAGC | 5 cut(s) | 394, 517, 880, 898, 2809 |
| LweI | GCATC | 5 cut(s) | 592, 880, 2302, 2554, 2896 |
| MaeI | CTAG | 5 cut(s) | 219, 882, 1059, 1688, 2829 |
| MaeII | ACGT | 5 cut(s) | 213, 512, 1773, 2770, 3009 |
| MaeIII | GTNAC | 7 cut(s) | 209, 214, 571, 701, 2180, 2897, 3023 |
| MalI | GATC | 6 cut(s) | 688, 1050, 1539, 1721, 2191, 2688 |
| MboI | GATC | 6 cut(s) | 686, 1048, 1537, 1719, 2189, 2686 |
| MfeI | CAATTG | 3 cut(s) | 2019, 2301, 2316 |
| MflI | RGATCY | 2 cut(s) | 686, 2686 |
| MhlI | GDGCHC | 4 cut(s) | 266, 285, 1508, 2759 |
| MlsI | TGGCCA | 1 cut(s) | 793 |
| MluNI | TGGCCA | 1 cut(s) | 793 |
| MlyI | GAGTC | 7 cut(s) | 291, 824, 1940, 1954, 2141, 2900, 3152 |
| MmeI | TCCRAC | 2 cut(s) | 714, 1974 |
| Mox20I | TGGCCA | 1 cut(s) | 793 |
| Mph1103I | ATGCAT | 2 cut(s) | 1078, 2911 |
| MroXI | GAANNNNTTC | 6 cut(s) | 561, 1337, 1349, 1449, 2360, 3156 |
| MscI | TGGCCA | 1 cut(s) | 793 |
| MslI | CAYNNNNRTG | 4 cut(s) | 438, 2427, 2667, 3077 |
| Msp20I | TGGCCA | 1 cut(s) | 793 |
| MspA1I | CMGCKG | 3 cut(s) | 231, 674, 3002 |
| MspCI | CTTAAG | 1 cut(s) | 173 |
| MspI | CCGG | 1 cut(s) | 337 |
| MspR9I | CCNGG | 1 cut(s) | 2187 |
| MssI | GTTTAAAC | 1 cut(s) | 225 |
| MunI | CAATTG | 3 cut(s) | 2019, 2301, 2316 |
| Mva1269I | GAATGC | 1 cut(s) | 1078 |
| MvaI | CCWGG | 1 cut(s) | 2187 |
| NdeI | CATATG | 1 cut(s) | 2911 |
| NdeII | GATC | 6 cut(s) | 686, 1048, 1537, 1719, 2189, 2686 |
| NlaIV | GGNNCC | 3 cut(s) | 478, 2816, 2969 |
| NmeAIII | GCCGAG | 1 cut(s) | 100 |
| NmuCI | GTSAC | 4 cut(s) | 209, 701, 2180, 3023 |
| NsiI | ATGCAT | 2 cut(s) | 1078, 2911 |
| NspI | RCATGY | 3 cut(s) | 1474, 2426, 2497 |
| NspV | TTCGAA | 1 cut(s) | 1877 |
| PagI | TCATGA | 1 cut(s) | 469 |
| PceI | AGGCCT | 1 cut(s) | 2732 |
| PciI | ACATGT | 1 cut(s) | 1470 |
| PciSI | GCTCTTC | 3 cut(s) | 2372, 2747, 2764 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 518 |
| PctI | GAATGC | 1 cut(s) | 1078 |
| PdmI | GAANNNNTTC | 6 cut(s) | 561, 1337, 1349, 1449, 2360, 3156 |
| PfeI | GAWTC | 7 cut(s) | 1195, 1231, 1241, 2615, 2742, 3031, 3110 |
| PkrI | GCNGC | 6 cut(s) | 409, 532, 895, 913, 1597, 2824 |
| PleI | GAGTC | 7 cut(s) | 291, 824, 1939, 1953, 2140, 2899, 3151 |
| PmeI | GTTTAAAC | 1 cut(s) | 225 |
| PpsI | GAGTC | 7 cut(s) | 291, 824, 1939, 1953, 2140, 2899, 3151 |
| PscI | ACATGT | 1 cut(s) | 1470 |
| PshBI | ATTAAT | 1 cut(s) | 2346 |
| Psp124BI | GAGCTC | 2 cut(s) | 266, 2759 |
| Psp1406I | AACGTT | 2 cut(s) | 512, 2770 |
| Psp6I | CCWGG | 1 cut(s) | 2185 |
| PspEI | GGTNACC | 1 cut(s) | 2180 |
| PspFI | CCCAGC | 2 cut(s) | 231, 2475 |
| PspGI | CCWGG | 1 cut(s) | 2185 |
| PspN4I | GGNNCC | 3 cut(s) | 478, 2816, 2969 |
| PspPI | GGNCC | 7 cut(s) | 477, 649, 1015, 1823, 2012, 2335, 2968 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2798, 2830 |
| PstI | CTGCAG | 1 cut(s) | 331 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1934, 2332 |
| PsuI | RGATCY | 2 cut(s) | 686, 2686 |
| PvuII | CAGCTG | 2 cut(s) | 231, 674 |
| RsaI | GTAC | 9 cut(s) | 1374, 1529, 2003, 2061, 2360, 2412, 2492, 2816, 2846 |
| RsaNI | GTAC | 9 cut(s) | 1373, 1528, 2002, 2060, 2359, 2411, 2491, 2815, 2845 |
| RseI | CAYNNNNRTG | 4 cut(s) | 438, 2427, 2667, 3077 |
| SacI | GAGCTC | 2 cut(s) | 266, 2759 |
| SapI | GCTCTTC | 3 cut(s) | 2372, 2747, 2764 |
| SatI | GCNGC | 6 cut(s) | 408, 531, 894, 912, 1596, 2823 |
| Sau3AI | GATC | 6 cut(s) | 686, 1048, 1537, 1719, 2189, 2686 |
| Sau96I | GGNCC | 7 cut(s) | 477, 649, 1015, 1823, 2012, 2335, 2968 |
| ScaI | AGTACT | 2 cut(s) | 1529, 2360 |
| SchI | GAGTC | 7 cut(s) | 291, 824, 1940, 1954, 2141, 2900, 3152 |
| ScrFI | CCNGG | 1 cut(s) | 2187 |
| SduI | GDGCHC | 4 cut(s) | 266, 285, 1508, 2759 |
| SfaNI | GCATC | 5 cut(s) | 592, 880, 2302, 2554, 2896 |
| SfcI | CTRYAG | 4 cut(s) | 128, 327, 694, 2682 |
| SfuI | TTCGAA | 1 cut(s) | 1877 |
| SinI | GGWCC | 3 cut(s) | 477, 1823, 2968 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 438, 2427, 2667, 3077 |
| SmlI | CTYRAG | 3 cut(s) | 173, 278, 1431 |
| SmoI | CTYRAG | 3 cut(s) | 173, 278, 1431 |
| SpeI | ACTAGT | 1 cut(s) | 218 |
| SseBI | AGGCCT | 1 cut(s) | 2732 |
| SsiI | CCGC | 7 cut(s) | 253, 461, 1595, 2723, 2746, 2839, 3002 |
| SspI | AATATT | 1 cut(s) | 3156 |
| SspMI | CTAG | 5 cut(s) | 219, 882, 1059, 1688, 2829 |
| SstI | GAGCTC | 2 cut(s) | 266, 2759 |
| StuI | AGGCCT | 1 cut(s) | 2732 |
| StyD4I | CCNGG | 1 cut(s) | 2185 |
| StyI | CCWWGG | 1 cut(s) | 2848 |
| TaaI | ACNGT | 8 cut(s) | 577, 646, 1733, 1992, 2066, 2442, 2814, 3106 |
| TaiI | ACGT | 5 cut(s) | 216, 515, 1776, 2773, 3012 |
| TaqI | TCGA | 6 cut(s) | 438, 521, 1877, 2158, 2197, 3064 |
| TaqII | GACCGA | 1 cut(s) | 1811 |
| TatI | WGTACW | 3 cut(s) | 1527, 2358, 2490 |
| TauI | GCSGC | 1 cut(s) | 1598 |
| TfiI | GAWTC | 7 cut(s) | 1195, 1231, 1241, 2615, 2742, 3031, 3110 |
| TscAI | CASTG | 6 cut(s) | 775, 1516, 1681, 2069, 2508, 2544 |
| TseFI | GTSAC | 4 cut(s) | 209, 701, 2180, 3023 |
| TseI | GCWGC | 5 cut(s) | 407, 530, 893, 911, 2822 |
| Tsp45I | GTSAC | 4 cut(s) | 209, 701, 2180, 3023 |
| TspGWI | ACGGA | 3 cut(s) | 85, 1041, 2823 |
| TspRI | CASTG | 6 cut(s) | 775, 1516, 1681, 2069, 2508, 2544 |
| Vha464I | CTTAAG | 1 cut(s) | 173 |
| VpaK11BI | GGWCC | 3 cut(s) | 477, 1823, 2968 |
| VspI | ATTAAT | 1 cut(s) | 2346 |
| XapI | RAATTY | 3 cut(s) | 181, 288, 1519 |
| XceI | RCATGY | 3 cut(s) | 1474, 2426, 2497 |
| XmnI | GAANNNNTTC | 6 cut(s) | 561, 1337, 1349, 1449, 2360, 3156 |
| XspI | CTAG | 5 cut(s) | 219, 882, 1059, 1688, 2829 |
| ZrmI | AGTACT | 2 cut(s) | 1529, 2360 |
| Zsp2I | ATGCAT | 2 cut(s) | 1078, 2911 |