Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0013983

Physical Location & Seq

Genomic Coordinates Forward (+)

57385681 .. 57402606

Gene Structure 16926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG375100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5493 bp

ATGGAGCCACCGCAGTTGCCGGAGTGCCCGGTGTGTCTGCAGAACTACGACGGCGCGTCGACGATTCCGCGCGTGCTGGGTTGCGGCCACTCGGCGTGCGAGGTCTGCCTGGCGAAGCTGCCCCACCGCTACCCGGAGACGATTCGCTGCCCGGCGTGTACTCAGCTCGTCAAGTACCCTCAGAACGGCGCCGCCGCGCTGCCCAAGAACATCGACCTTCTCTCGCTCTCTCTCTCCCTCTCTCCGCCGCAAAACCCTAACCCTAATTCCGACGCTCCCCGGAAGCGACGTCAGCAATCCGCCGATGATTTAGAAGTGTTTAATTTCCTGCCGCGGCTATGGTCCGACGAGTTTTATAGTGCTTGGAAGGACTGGGTTGTTGGGTACGACGCCGTTTTGGTCGAAACGGAAGAAAGGGCTCGGCTTTGTGATTCTGGTGCTGCTGTGGGGTTAGTTCAAGTTGGGTTTTTGGAGAGATTGGGTGATTCTAAATTTGAGTTTAGCTACAATGTGAGGGTTATGAAGTGTTTGAGTGGAATGAGAGAGGAGGAGAGGAGAGAATTGGGTTTGTTGCTGAGAGGTTCTGGGAGGCAGTGTAGGAGGATAGGGAGGGTTTATGGGTTTTGGGGAAATGTGGAAGATGGGGTTTTGTATTTAGTGTGTGAGAGCCAGAGTGGGAGGTTTGAGGAGAAGTTGAGGGGTTTGAGAAATGGGGATGGGTTTGGGAGAGATGGGTTGGGTGGTTTTGGTGTGATTGGTATGGAGGTGTGTGAGGCGGTGATGGGGTTGCATTCGGAGGGGTTTGTTGGTGGTGGTTTTGGTGTTTCGTGTTTTGGTTTCGATGATTTTGGTCATGTTTTTGTGGATTTGAATGAGGTGTTGGTGATGGGAAGGAAGGTTTGGACAAGTGTTGGTGGTACAAAGGGAATTGGTGCTGAAGAAATGGAAGTGATGTTTGGCAGTTTATTGAAAGATGGGGCTTTTGTTAGCATGGAGGTGTTGTTTGAGGTGTTGAAGAAAGAGGGCATTGCAGTGGAATGTGAGAGCTCAAAATATATGGTTGGGTATGGCTCGGATGTTTGGTCATTAGCTTGTGTTTTGCTCAGTCTGCTTCTTGGGAAAGAGTTCAGTGAAGAGATTGGAAATATGAATCATATTTGCGACCATTCAACATTTGCAAGTTGGATTGAAAGAGTTGGTGATTTGCTGGACAGTAGATTGGGTTCTGAATATGCATCACTGAGGGTGACTCTCTGTAAATGTTTGAATTATGATCCAGCAAGTCGTCCACTAGTGATTGATGTTATGATTTGCATTAGGGAACTGATTATTAAACCTCAATATGATATCATGGCCGGTTTGGAGAGACCGGTTAAGGAGAACAGCACAAGTTGTTGCTTGATTCTGGGGGAGCTCTGTCAGATGCCCAAGAAAATGTCAGAAACACAGAAAGAACATGAGTTGCAGGGAAAAGAAGTTGGTGGAGGAGCAGACTTTGATCAGGTTGATGAGGGGAGGTCTGAGAATGGTTTTGTTGATGGACTCGCAGAGGGAAAGGTCAAATCTAAAGTTCTGCAGGGCCATCGTGACTCTATTACAGCATTAGCTGTTGGAGGAGAATTTCTATTCAGCTCCTCATTTGACAAAACCATCCATGTGTGGTCTTTGCAGGACTTCTGTCATGTACATACATTTAAAGGCCATGAGCATACCATTAAGGCTCTAATTTATGTAGATGAAGAGAAACCCTTGTGCATAAGTGGTGACAGTGGAGGTGGCATATTTGTCTGGAGCACAAGTTCCCCTCTAGGGCAAAAACCATTGAAGATACTGTATGAGCAGAAAGATTGGCGCTTTAGTGGTATTCATGCCTTGGCCTTTAGAGATGGATATATTTATACCGGCAGTGGAGACAGAACAGTAAAAGCATGGTCTATGCAGGACGGCACCATATCATGCACTATGTCTGGTCATAAATCAGTAGTTTCAACACTTACAGTTTGTGATAGTGTTCTGTATAGCGGCAGTTGGGATGGAACCATACGATTATGGAGTCTCAGCGATCACAGTCCTTTGGCAGTACTAGGGGAAGACACATCTGGAACTGTGGCTTCTGTCTTATCTCTTGCTGCTGACAGACATGTGCTCATTGCAACCCATGAAAATGGATGTCTAAAGGTCTGGAAAAATGATGTGTTTATGAAATCCATTAAAATGCACAATGGTGCAGTTTTTGCTACCGGCCTGGATGGAAAATGGCTTTTCACAGGCGGGTTGGATAAAACTGTCAATGTCCAGGAATGGTCTGGTGATGAGTTTCAAACAGATTTCAGACCTATTGGATCCATCCCCTGTGATTCTGTCATTACAACTTTGTTGTGCTGGCAAGGAAAGCTTTTTGTTGGATATGCTAATAGGAATATCATGGAAAATCTGGGCCGGATTGGAAAGACTTGGAACGACGTGACTAGCTTGAACAGCTGGGTTGTTCGAGACTACTACCGCCTTGTCAACTCTGTCAACTCTTTTGAGCCACAGCTACAGAGGCTCACTGATGACCAGCTTACTGCTAAAACTGCCGAGTTTCGGCGAAGATTGGGACAAGGAGAGACACTTGCGGATATTCAAGCCGAGGCTTTTGCTGTTGTTCGTGAAGCTGCGAAACGGAAGCTTGGTATGCGTCATTTTGATGTTCAGATTATTGGTGGGGCAGTGCTTCATGATGGGTCCATTGCAGAAATGAAGACGGGAGAGGGAAAAACGTTGGTTTCCACATTAGCAGCATATCTTAATGCCCTGACTGGCGATGGTGTTCATGTGGTAACCGTAAATGATTACCTTGCTCAAAGGGATGCTGAGTGGATGGGTCGTGTTCATCGCTTCCTAGGTCTTTCAGTGGGTCTTATTCAGAGAGGGATGACAGCTGACAAGAGGAGGTTGAACTATAGATGTGACATAACATACACCAATAATTCAGAACTTGGGTTTGACTATCTACGAGACAATCTTGCCGGAAACAGTGGAGAACTTGTTATGAGATCGCCAAAGCCATTTCATTTTGCAATAGTTGATGAAGTTGACTCAGTTCTTATTGATGAAGGAAGAAATCCATTGCTAATTAGTGGCGAGGCTAGTAAAGATGCTGCTCGCTATCCTGTTGCTGCTAAAGTGGCTGAGTTGCTTGTGCGAGGAATTCATTACAATGTAGAACTTAAAGATTACTCAGTTGAGTTGACTGAAGAAGGAATAGCTCTTGCTGAGATGGCTCTTGAAACAAATGACTTATGGGATGAAACTGATCCCTGGGCCAGATTTGTGATGAATGCGTTGAAAGCTAAAGAGTTCTATCGGAAGGATGTGCAATATATTGTCAGAAATGGGAAGGCTCTCATAATCAATGAGCTCACTGGCAGAGTCGAAGATAAGAGAAGGTGGTCTGAGGGTATTCATCAAGCTGTGGAGGGAAAAGAAGGTTTGAAGATTCAGGCTGATTCGGTTGTTATCGCACAAATCACATATCAATCTCTGTTCAAGCTCTACCCAAAGCTATCAGGGATGACTGGCACTGCAAAAACTGAAGAGAAAGAGTTCTTGAAAATGTTCCAAACACCAGTTATTGAAGTGCCAACAAATTTGCCAAACATTCGTAATGATTTACCTATTCAAGCTTTTGCGACTGCTCAGGGGAAATGGGAATATGTTCGTCAAGAAGTGGAATACATGTTCAGGCAGGGGCGTCCTGTTTTGGTTGGCACCACCAGTGTTGAGTATTCTGAACACCTGTCTGATCTGTTGAGGGAACATAACATCCCACACAATGTTCTAAATGCACGGCCCAAGTATGCTGCAAGGGAGGCTGAAATTGTTGCCCAAGCTGGACGAAAACATGCCATTACTCTTTCTACTAATATGGCTGGCAGAGGCACTGACATAATCCTAGGGGGGAATCCTAAAATGCTTGCAAAAGAAATCATAGAAGACAGTTTGATTTCATTCCTGACACGAGAAGCTCCTAACATTGACATAGATGGAGAGGCGATTTCACAAAAGGTATTGTCAAAGATTAAGGTCGGTCCATCATCATTAGCTTTGCTGGCTAAGACAGCGTTAATGGCTAAATATGTTGGCAAAAATGAAGGGAAGAGCTGGACATATAAGGAGGCAAAATCCATGATATCAGAGTCTGTGGAAATGAGTCAATCAAGAGATTTGAAAGAGCTAGAGAGGCTTGTTGATGAGCAGTCTGAGATATACCCTCTTGGCCCTACAATAGCAGTTGCTTATCTGTCAGTTTTGAAGGATTGCGAGGTACACTGTTTCAAAGAAGGGTCTGAAGTGAAAAGACTTGGGGGACTTCATGTGATTGGAACGTCTTTGCACGAGTCTCGTAGAATAGATAACCAGCTTCGTGGCAGAGCAGGAAGGCAAGGTGATCCAGGATCAACTCGATTTATGGTGAGCTTGCAGGATGAGATGTTTCAAAAGTTTAATTTTGATACTGAGTGGGCTGTGAGACTTATTTCAAAAATTACTGATGATGAGGATGTACCAATTGAAGGTGATGCCATTGTGAGACAGCATCCAAGAAAATGGAGTTTAAATAAGCTTTTGAAGGAGTTTATGGCAATTGCTGGGAAACTATTGGATGATTCATTTGCAGGAATTACTGAGGAAGCTTTGTTAGAATCTCTTGCGCAGTCACATGAACTGAACTTTAAAGATATTGATGACATTCACCTTCCAAACTTGCCAAAACCTCCAAATGCCTTCAGAGGTATCCGCAAGAAGAACTCTTCATTGAAACGTTGGCTTGCTATATGCTCGGATGATTTGACCAAGAATGGAAGGTACCATGCTACTACTAACCTCCTCCGCAAGTACCTTGGAGACTATTTGATTGCTTCATATTTGGATGTTGTTCAAGACTCTGGTTATGATGATACATATGTGAAGGAAGTTGAAAGAGCAGTTATTGTGAAAACCCTTGATTGTTTCTGGAGGGATCACCTTGTAAACATGAACAGGCTAAGTTCAGCGGTGAATGTAAGGAGTTTTGGGCACAGGAATCCTCTTGAAGAATACAAGATTGATGGTTGTCGTTTTTTCATATCTATGCTTAGTGCAACACGAAGGTTGACTGTAGAGTCACTTTTGCAATATTGGTCCTCCCCAATGGACTATGGCTATAAAGAATTCATACTGTGGTTGTATAGTTATGGTGATTGTTTGGATGGTTGCTTGAAGGAACCATGGTTTGTATATTGGTGGGCTAGTATGTCAACCAAACTGATCTTGCCTGGTATGAAGTGTGTTGCTCTTATCCCTCAGCTTCATTATATGAAGAGTATTGAACTTGTAACCTTTTCCATAGGATTGGACCCGAGAAGTGCACTGTTTCAGTGTTTCATTGAAGAAGGCAGCAGGTTTTTGCTGAGGAACAGAGGAATTGGAACTGCAATGAACACCTTGATTGGAGTGGAGCAAACTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0006996 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0009657 GO:0009658 GO:0009987 GO:0010109 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019222 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0031323 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW WD40 zf-RING_UBOX

Protein Analysis

1830

Amino Acids

204.5

Weight (kDa)

5.79

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_UBOX	PF13445	9 - 51	1.7e-06	RING-type zinc-finger
WDR55	PF24796	516 - 729	1.2e-12	WDR55
WD40_Gbeta	PF25391	522 - 684	2.2e-07	G protein beta WD-40 repeat protein
Beta-prop_SCAP	PF24017	523 - 598	6.5e-06	SCAP Beta-propeller
Beta-prop_WDR3_1st	PF25173	524 - 597	4.4e-08	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	525 - 743	9.4e-24	WDR5 beta-propeller domain
WD40_Prp19	PF24814	620 - 764	2.3e-08	Prp19 WD40 domain
Beta-prop_TEP1_2nd	PF25047	630 - 744	2.9e-06	TEP-1 second beta-propeller
Beta-prop_WDR3_1st	PF25173	631 - 765	3e-13	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	631 - 695	1.9e-06	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	631 - 692	2.6e-07	WDHD1 first WD40 domain
SecA_DEAD	PF07517	828 - 1197	1.7e-115	SecA DEAD-like domain
SecA_PP_bind	PF01043	1048 - 1154	1.5e-28	SecA preprotein cross-linking domain
P-loop_SecA	PF21090	1213 - 1500	1.7e-65	SecA P-loop domain
SecA_SW	PF07516	1616 - 1719	2.3e-18	SecA Wing and Scaffold domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21650 AT1G21650 AT1G21650
fragaria_vesca	FvH4_2g27750
malus_domestica	MD00G1100600.v1.1
prunus_persica	Prupe.1G490400_v2.0.a1
pyrus_communis	pycom15g30570
rosa_chinensis	RchiOBHm_Chr6g0296621
rosa_laevigata	RLG00000011676
rosa_multiflora	Rmu_sc0001741.1_g000019
rosa_roxburghii	Rroxscaffold_7G00171330 Rroxscaffold_7G00178770
rosa_rugosa	Rorug06G0263700
rosa_samantha	Rh6AG375100 Rh6CG388700
rosa_wichuraiana	Rw6G032720 Rw6G032810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	5143
AatII	GACGTC	1 cut(s)	292
Acc16I	TGCGCA	1 cut(s)	4695
Acc36I	ACCTGC	1 cut(s)	5412
Acc65I	GGTACC	1 cut(s)	4848
AccB1I	GGYRCC	4 cut(s)	188, 1946, 3752, 4848
AccI	GTMKAC	1 cut(s)	59
AccII	CGCG	5 cut(s)	56, 70, 72, 197, 334
AclI	AACGTT	2 cut(s)	2762, 4804
AclWI	GGATC	7 cut(s)	1268, 2337, 2350, 3293, 4427, 4447, 5010
AcoI	YGGCCR	2 cut(s)	85, 1353
AcsI	RAATTY	5 cut(s)	491, 1619, 3192, 3631, 5192
AcuI	CTGAAG	5 cut(s)	957, 3258, 3597, 4353, 4753
AcyI	GRCGYC	4 cut(s)	189, 289, 390, 3736
AfiI	CCNNNNNNNGG	5 cut(s)	133, 185, 1809, 2586, 4556
AflIII	ACRYGT	2 cut(s)	2140, 3720
AgeI	ACCGGT	1 cut(s)	1369
AhdI	GACNNNNNGTC	1 cut(s)	55
AhlI	ACTAGT	1 cut(s)	1291
AjiI	CACGTC	1 cut(s)	2464
AjnI	CCWGG	6 cut(s)	108, 2244, 2295, 3302, 4435, 5296
AjuI	GAANNNNNNNTTGG	6 cut(s)	863, 883, 895, 915, 939, 971
AleI	CACNNNNGTG	1 cut(s)	2223
AloI	GAACNNNNNNTCC	6 cut(s)	1783, 1815, 3707, 3739, 3792, 3824
Alw21I	GWGCWC	6 cut(s)	1049, 1416, 1796, 2148, 3405, 5392
Alw44I	GTGCAC	1 cut(s)	5388
AlwI	GGATC	7 cut(s)	1268, 2337, 2350, 3293, 4427, 4447, 5010
AlwNI	CAGNNNCTG	1 cut(s)	4184
Ama87I	CYCGRG	1 cut(s)	5380
ApaLI	GTGCAC	1 cut(s)	5388
ApoI	RAATTY	5 cut(s)	491, 1619, 3192, 3631, 5192
AsiGI	ACCGGT	1 cut(s)	1369
Asp700I	GAANNNNTTC	4 cut(s)	1124, 3587, 3599, 3699
Asp718I	GGTACC	1 cut(s)	4848
AspA2I	CCTAGG	2 cut(s)	2884, 3937
AspLEI	GCGC	6 cut(s)	56, 72, 191, 199, 1854, 4696
AsuC2I	CCSGG	4 cut(s)	29, 134, 152, 280
AvaI	CYCGRG	1 cut(s)	5380
AvaII	GGWCC	5 cut(s)	342, 2727, 4073, 5163, 5377
AvrII	CCTAGG	2 cut(s)	2884, 3937
BaeGI	GKGCMC	3 cut(s)	29, 5061, 5392
BaeI	ACNNNNGTAYC	2 cut(s)	4932, 4965
BamHI	GGATCC	1 cut(s)	2342
BanI	GGYRCC	4 cut(s)	188, 1946, 3752, 4848
BanII	GRGCYC	4 cut(s)	421, 1049, 1416, 3405
BauI	CACGAG	2 cut(s)	4002, 4379
BbsI	GAAGAC	3 cut(s)	2097, 2750, 3984
Bbv12I	GWGCWC	6 cut(s)	1049, 1416, 1796, 2148, 3405, 5392
BbvCI	CCTCAGC	2 cut(s)	5325, 5432
BceAI	ACGGC	5 cut(s)	67, 202, 377, 1960, 3848
BcgI	CGANNNNNNTGC	6 cut(s)	1565, 1599, 2621, 2655, 4367, 4401
BciT130I	CCWGG	6 cut(s)	110, 2246, 2297, 3304, 4437, 5298
BciVI	GTATCC	1 cut(s)	4787
BclI	TGATCA	1 cut(s)	1498
BcnI	CCSGG	4 cut(s)	29, 134, 152, 280
BcuI	ACTAGT	1 cut(s)	1291
BfaI	CTAG	9 cut(s)	1292, 1808, 2084, 2469, 2885, 3132, 3938, 4220, 5271
BfmI	CTRYAG	5 cut(s)	38, 1574, 2540, 2944, 5139
BfoI	RGCGCY	2 cut(s)	192, 1855
BfuAI	ACCTGC	1 cut(s)	5412
BfuI	GTATCC	1 cut(s)	4787
BlnI	CCTAGG	2 cut(s)	2884, 3937
BmcAI	AGTACT	1 cut(s)	2082
Bme18I	GGWCC	5 cut(s)	342, 2727, 4073, 5163, 5377
BmeRI	GACNNNNNGTC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	5380
BmgBI	CACGTC	1 cut(s)	2464
BmrI	ACTGGG	1 cut(s)	382
BmsI	GCATC	6 cut(s)	1244, 1413, 2842, 3130, 4552, 4588
BmuI	ACTGGG	1 cut(s)	382
BoxI	GACNNNNGTC	1 cut(s)	1677
BpiI	GAAGAC	3 cut(s)	2097, 2750, 3984
BplI	GAGNNNNNCTC	2 cut(s)	1234, 1266
BpmI	CTGGAG	2 cut(s)	1810, 5017
Bpu10I	CCTNAGC	3 cut(s)	3681, 5325, 5432
BpuMI	CCSGG	4 cut(s)	29, 134, 152, 280
BsaHI	GRCGYC	4 cut(s)	189, 289, 390, 3736
BsaI	GGTCTC	1 cut(s)	1360
BsaWI	WCCGGW	1 cut(s)	1369
BsaXI	ACNNNNNCTCC	8 cut(s)	580, 610, 986, 1016, 1783, 1813, 3015, 3045
Bsc4I	CCNNNNNNNGG	5 cut(s)	133, 185, 1809, 2586, 4556
Bse118I	RCCGGY	4 cut(s)	1355, 1369, 1901, 2240
Bse1I	ACTGG	6 cut(s)	377, 2806, 3412, 3565, 3611, 3759
Bse3DI	GCAATG	5 cut(s)	1026, 2148, 2730, 3110, 5463
BseBI	CCWGG	6 cut(s)	110, 2246, 2297, 3304, 4437, 5298
BseLI	CCNNNNNNNGG	5 cut(s)	133, 185, 1809, 2586, 4556
BseMI	GCAATG	5 cut(s)	1026, 2148, 2730, 3110, 5463
BseNI	ACTGG	6 cut(s)	377, 2806, 3412, 3565, 3611, 3759
BseRI	GAGGAG	9 cut(s)	560, 563, 568, 701, 1500, 1624, 1629, 2947, 4859
BseSI	GKGCMC	3 cut(s)	29, 5061, 5392
BseYI	CCCAGC	3 cut(s)	76, 2481, 4631
BsgI	GTGCAG	1 cut(s)	2247
Bsh1236I	CGCG	5 cut(s)	56, 70, 72, 197, 334
BshNI	GGYRCC	4 cut(s)	188, 1946, 3752, 4848
BshTI	ACCGGT	1 cut(s)	1369
BsiHKAI	GWGCWC	6 cut(s)	1049, 1416, 1796, 2148, 3405, 5392
BsiHKCI	CYCGRG	1 cut(s)	5380
BslFI	GGGAC	2 cut(s)	2613, 4365
BslI	CCNNNNNNNGG	5 cut(s)	133, 185, 1809, 2586, 4556
BsmBI	CGTCTC	1 cut(s)	131
BsmFI	GGGAC	2 cut(s)	2613, 4365
BsmI	GAATGC	2 cut(s)	790, 3328
Bso31I	GGTCTC	1 cut(s)	1360
BsoBI	CYCGRG	1 cut(s)	5380
Bsp1286I	GDGCHC	9 cut(s)	29, 421, 1049, 1416, 1796, 2148, 3405, 5061, 5392
Bsp1407I	TGTACA	1 cut(s)	1684
Bsp19I	CCATGG	1 cut(s)	5249
BspFNI	CGCG	5 cut(s)	56, 70, 72, 197, 334
BspHI	TCATGA	1 cut(s)	2719
BspMAI	CTGCAG	2 cut(s)	42, 1578
BspMI	ACCTGC	1 cut(s)	5412
BspPI	GGATC	7 cut(s)	1268, 2337, 2350, 3293, 4427, 4447, 5010
BspQI	GCTCTTC	1 cut(s)	4136
BspT107I	GGYRCC	4 cut(s)	188, 1946, 3752, 4848
BspTNI	GGTCTC	1 cut(s)	1360
BsrDI	GCAATG	5 cut(s)	1026, 2148, 2730, 3110, 5463
BsrFI	RCCGGY	4 cut(s)	1355, 1369, 1901, 2240
BsrGI	TGTACA	1 cut(s)	1684
BsrI	ACTGG	6 cut(s)	377, 2806, 3412, 3565, 3611, 3759
BssAI	RCCGGY	4 cut(s)	1355, 1369, 1901, 2240
BssNI	GRCGYC	4 cut(s)	189, 289, 390, 3736
BssSI	CACGAG	2 cut(s)	4002, 4379
BssT1I	CCWWGG	5 cut(s)	1872, 2884, 3937, 4882, 5249
Bst2BI	CACGAG	2 cut(s)	4002, 4379
Bst2UI	CCWGG	6 cut(s)	110, 2246, 2297, 3304, 4437, 5298
Bst6I	CTCTTC	6 cut(s)	1128, 1734, 3573, 4136, 4798, 5336
BstACI	GRCGYC	4 cut(s)	189, 289, 390, 3736
BstAPI	GCANNNNNTGC	1 cut(s)	2234
BstAUI	TGTACA	1 cut(s)	1684
BstC8I	GCNNGC	9 cut(s)	74, 97, 2384, 3148, 3916, 3960, 4095, 4463, 4812
BstDSI	CCRYGG	2 cut(s)	332, 5249
BstEII	GGTNACC	1 cut(s)	2821
BstFNI	CGCG	5 cut(s)	56, 70, 72, 197, 334
BstH2I	RGCGCY	2 cut(s)	192, 1855
BstHHI	GCGC	6 cut(s)	56, 72, 191, 199, 1854, 4696
BstNI	CCWGG	6 cut(s)	110, 2246, 2297, 3304, 4437, 5298
BstNSI	RCATGY	3 cut(s)	2144, 3724, 3890
BstPAI	GACNNNNGTC	1 cut(s)	1677
BstPI	GGTNACC	1 cut(s)	2821
BstSFI	CTRYAG	5 cut(s)	38, 1574, 2540, 2944, 5139
BstSLI	GKGCMC	3 cut(s)	29, 5061, 5392
BstUI	CGCG	5 cut(s)	56, 70, 72, 197, 334
BstV2I	GAAGAC	3 cut(s)	2097, 2750, 3984
BstX2I	RGATCY	1 cut(s)	2342
BstXI	CCANNNNNNTGG	4 cut(s)	2165, 4409, 4590, 5374
BstYI	RGATCY	1 cut(s)	2342
BsuI	GTATCC	1 cut(s)	4787
BtgI	CCRYGG	2 cut(s)	332, 5249
BtgZI	GCGATG	2 cut(s)	2820, 2861
BtrI	CACGTC	1 cut(s)	2464
BtsI	GCAGTG	5 cut(s)	599, 1038, 1912, 2718, 3564
BveI	ACCTGC	1 cut(s)	5412
Cac8I	GCNNGC	9 cut(s)	74, 97, 2384, 3148, 3916, 3960, 4095, 4463, 4812
CaiI	CAGNNNCTG	1 cut(s)	4184
CciI	TCATGA	1 cut(s)	2719
CfoI	GCGC	6 cut(s)	56, 72, 191, 199, 1854, 4696
Cfr10I	RCCGGY	4 cut(s)	1355, 1369, 1901, 2240
Cfr42I	CCGCGG	1 cut(s)	335
CseI	GACGC	5 cut(s)	45, 281, 398, 2669, 3725
CspAI	ACCGGT	1 cut(s)	1369
CspCI	CAANNNNNGTGG	3 cut(s)	32, 3745, 3780
DinI	GGCGCC	1 cut(s)	190
DraI	TTTAAA	3 cut(s)	1696, 4599, 4717
DrdI	GACNNNNNNGTC	1 cut(s)	5143
DriI	GACNNNNNGTC	1 cut(s)	55
DseDI	GACNNNNNNGTC	1 cut(s)	5143
EaeI	YGGCCR	2 cut(s)	85, 1353
Eam1104I	CTCTTC	6 cut(s)	1128, 1734, 3573, 4136, 4798, 5336
Eam1105I	GACNNNNNGTC	1 cut(s)	55
EarI	CTCTTC	6 cut(s)	1128, 1734, 3573, 4136, 4798, 5336
EciI	GGCGGA	2 cut(s)	234, 289
Ecl136II	GAGCTC	3 cut(s)	1047, 1414, 3403
Eco130I	CCWWGG	5 cut(s)	1872, 2884, 3937, 4882, 5249
Eco24I	GRGCYC	4 cut(s)	421, 1049, 1416, 3405
Eco31I	GGTCTC	1 cut(s)	1360
Eco32I	GATATC	2 cut(s)	1348, 4176
Eco47I	GGWCC	5 cut(s)	342, 2727, 4073, 5163, 5377
Eco53kI	GAGCTC	3 cut(s)	1047, 1414, 3403
Eco57I	CTGAAG	5 cut(s)	957, 3258, 3597, 4353, 4753
Eco88I	CYCGRG	1 cut(s)	5380
Eco91I	GGTNACC	1 cut(s)	2821
EcoICRI	GAGCTC	3 cut(s)	1047, 1414, 3403
EcoO65I	GGTNACC	1 cut(s)	2821
EcoRI	GAATTC	2 cut(s)	3192, 5192
EcoRII	CCWGG	6 cut(s)	108, 2244, 2295, 3302, 4435, 5296
EcoRV	GATATC	2 cut(s)	1348, 4176
EcoT14I	CCWWGG	5 cut(s)	1872, 2884, 3937, 4882, 5249
EcoT22I	ATGCAT	1 cut(s)	1237
EcoT38I	GRGCYC	4 cut(s)	421, 1049, 1416, 3405
EgeI	GGCGCC	1 cut(s)	190
EheI	GGCGCC	1 cut(s)	190
ErhI	CCWWGG	5 cut(s)	1872, 2884, 3937, 4882, 5249
Esp3I	CGTCTC	1 cut(s)	131
FalI	AAGNNNNNCTT	2 cut(s)	2379, 2411
FaqI	GGGAC	2 cut(s)	2613, 4365
FauI	CCCGC	1 cut(s)	2264
FauNDI	CATATG	1 cut(s)	4945
FbaI	TGATCA	1 cut(s)	1498
FblI	GTMKAC	1 cut(s)	59
FriOI	GRGCYC	4 cut(s)	421, 1049, 1416, 3405
FspBI	CTAG	9 cut(s)	1292, 1808, 2084, 2469, 2885, 3132, 3938, 4220, 5271
FspI	TGCGCA	1 cut(s)	4695
GlaI	GCGC	6 cut(s)	55, 71, 190, 198, 1853, 4695
GsaI	CCCAGC	3 cut(s)	80, 2485, 4635
GsuI	CTGGAG	2 cut(s)	1810, 5017
HaeII	RGCGCY	2 cut(s)	192, 1855
HgaI	GACGC	5 cut(s)	45, 281, 398, 2669, 3725
HhaI	GCGC	6 cut(s)	56, 72, 191, 199, 1854, 4696
Hin1I	GRCGYC	4 cut(s)	189, 289, 390, 3736
Hin6I	GCGC	6 cut(s)	54, 70, 189, 197, 1852, 4694
HinP1I	GCGC	6 cut(s)	54, 70, 189, 197, 1852, 4694
HincII	GTYRAC	7 cut(s)	60, 2512, 2521, 3079, 3234, 5136, 5280
HindII	GTYRAC	7 cut(s)	60, 2512, 2521, 3079, 3234, 5136, 5280
HindIII	AAGCTT	5 cut(s)	2393, 2669, 3666, 4604, 4674
Hpy99I	CGWCG	8 cut(s)	53, 61, 64, 275, 291, 350, 392, 2465
HpyCH4IV	ACGT	5 cut(s)	289, 2463, 2762, 4370, 4804
HpySE526I	ACGT	5 cut(s)	289, 2463, 2762, 4370, 4804
Hsp92I	GRCGYC	4 cut(s)	189, 289, 390, 3736
HspAI	GCGC	6 cut(s)	54, 70, 189, 197, 1852, 4694
KasI	GGCGCC	1 cut(s)	188
KpnI	GGTACC	1 cut(s)	4852
Ksp22I	TGATCA	1 cut(s)	1498
KspI	CCGCGG	1 cut(s)	335
LguI	GCTCTTC	1 cut(s)	4136
LmnI	GCTCC	8 cut(s)	4, 280, 1411, 1487, 1637, 1791, 4015, 5479
LweI	GCATC	6 cut(s)	1244, 1413, 2842, 3130, 4552, 4588
MaeI	CTAG	9 cut(s)	1292, 1808, 2084, 2469, 2885, 3132, 3938, 4220, 5271
MaeII	ACGT	5 cut(s)	289, 2463, 2762, 4370, 4804
MaeIII	GTNAC	9 cut(s)	1246, 1586, 1763, 2464, 2821, 2951, 4698, 5145, 5356
MfeI	CAATTG	2 cut(s)	4551, 4626
MflI	RGATCY	1 cut(s)	2342
MhlI	GDGCHC	9 cut(s)	29, 421, 1049, 1416, 1796, 2148, 3405, 5061, 5392
Mly113I	GGCGCC	1 cut(s)	189
MmeI	TCCRAC	6 cut(s)	294, 369, 1163, 1591, 2256, 2383
Mph1103I	ATGCAT	1 cut(s)	1237
MroXI	GAANNNNTTC	4 cut(s)	1124, 3587, 3599, 3699
MslI	CAYNNNNRTG	9 cut(s)	995, 1031, 1655, 2163, 2213, 2223, 2688, 3201, 5111
MspA1I	CMGCKG	4 cut(s)	334, 2481, 2924, 5036
MunI	CAATTG	2 cut(s)	4551, 4626
Mva1269I	GAATGC	2 cut(s)	790, 3328
MvaI	CCWGG	6 cut(s)	110, 2246, 2297, 3304, 4437, 5298
MvnI	CGCG	5 cut(s)	56, 70, 72, 197, 334
NarI	GGCGCC	1 cut(s)	189
NciI	CCSGG	4 cut(s)	29, 134, 152, 280
NcoI	CCATGG	1 cut(s)	5249
NdeI	CATATG	1 cut(s)	4945
NmeAIII	GCCGAG	4 cut(s)	71, 400, 2605, 2656
NmuCI	GTSAC	7 cut(s)	1246, 1586, 1763, 2464, 2951, 4698, 5145
NsbI	TGCGCA	1 cut(s)	4695
NsiI	ATGCAT	1 cut(s)	1237
NspI	RCATGY	3 cut(s)	2144, 3724, 3890
OliI	CACNNNNGTG	1 cut(s)	2223
PagI	TCATGA	1 cut(s)	2719
PasI	CCCWGGG	1 cut(s)	3303
PciI	ACATGT	2 cut(s)	2140, 3720
PciSI	GCTCTTC	1 cut(s)	4136
PctI	GAATGC	2 cut(s)	790, 3328
PdmI	GAANNNNTTC	4 cut(s)	1124, 3587, 3599, 3699
PfoI	TCCNGGA	2 cut(s)	2295, 4435
PinAI	ACCGGT	1 cut(s)	1369
PluTI	GGCGCC	1 cut(s)	192
PscI	ACATGT	2 cut(s)	2140, 3720
PshAI	GACNNNNGTC	1 cut(s)	1677
Psp124BI	GAGCTC	3 cut(s)	1049, 1416, 3405
Psp1406I	AACGTT	2 cut(s)	2762, 4804
Psp6I	CCWGG	6 cut(s)	108, 2244, 2295, 3302, 4435, 5296
PspEI	GGTNACC	1 cut(s)	2821
PspFI	CCCAGC	3 cut(s)	76, 2481, 4631
PspGI	CCWGG	6 cut(s)	108, 2244, 2295, 3302, 4435, 5296
PsrI	GAACNNNNNNTAC	2 cut(s)	1207, 1239
PstI	CTGCAG	2 cut(s)	42, 1578
PstNI	CAGNNNCTG	1 cut(s)	4184
PsuI	RGATCY	1 cut(s)	2342
PvuII	CAGCTG	2 cut(s)	2481, 2924
RseI	CAYNNNNRTG	9 cut(s)	995, 1031, 1655, 2163, 2213, 2223, 2688, 3201, 5111
SacI	GAGCTC	3 cut(s)	1049, 1416, 3405
SacII	CCGCGG	1 cut(s)	335
SalI	GTCGAC	1 cut(s)	58
SapI	GCTCTTC	1 cut(s)	4136
ScaI	AGTACT	1 cut(s)	2082
SduI	GDGCHC	9 cut(s)	29, 421, 1049, 1416, 1796, 2148, 3405, 5061, 5392
SfaNI	GCATC	6 cut(s)	1244, 1413, 2842, 3130, 4552, 4588
SfcI	CTRYAG	5 cut(s)	38, 1574, 2540, 2944, 5139
SfoI	GGCGCC	1 cut(s)	190
Sfr303I	CCGCGG	1 cut(s)	335
SgrBI	CCGCGG	1 cut(s)	335
SgrDI	CGTCGACG	1 cut(s)	58
SinI	GGWCC	5 cut(s)	342, 2727, 4073, 5163, 5377
SmiMI	CAYNNNNRTG	9 cut(s)	995, 1031, 1655, 2163, 2213, 2223, 2688, 3201, 5111
SpeI	ACTAGT	1 cut(s)	1291
SspDI	GGCGCC	1 cut(s)	188
SspI	AATATT	1 cut(s)	5159
SspMI	CTAG	9 cut(s)	1292, 1808, 2084, 2469, 2885, 3132, 3938, 4220, 5271
SstI	GAGCTC	3 cut(s)	1049, 1416, 3405
StyI	CCWWGG	5 cut(s)	1872, 2884, 3937, 4882, 5249
TaiI	ACGT	5 cut(s)	292, 2466, 2765, 4373, 4807
TaqI	TCGA	7 cut(s)	59, 213, 402, 840, 2491, 3417, 4447
TaqII	GACCGA	1 cut(s)	4061
TatI	WGTACW	3 cut(s)	158, 1684, 2080
TauI	GCSGC	7 cut(s)	87, 194, 197, 250, 334, 337, 2025
TseFI	GTSAC	7 cut(s)	1246, 1586, 1763, 2464, 2951, 4698, 5145
Tsp45I	GTSAC	7 cut(s)	1246, 1586, 1763, 2464, 2951, 4698, 5145
TspGWI	ACGGA	2 cut(s)	422, 2680
VneI	GTGCAC	1 cut(s)	5388
VpaK11BI	GGWCC	5 cut(s)	342, 2727, 4073, 5163, 5377
XapI	RAATTY	5 cut(s)	491, 1619, 3192, 3631, 5192
XceI	RCATGY	3 cut(s)	2144, 3724, 3890
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2303
XmaJI	CCTAGG	2 cut(s)	2884, 3937
XmiI	GTMKAC	1 cut(s)	59
XmnI	GAANNNNTTC	4 cut(s)	1124, 3587, 3599, 3699
XspI	CTAG	9 cut(s)	1292, 1808, 2084, 2469, 2885, 3132, 3938, 4220, 5271
ZraI	GACGTC	1 cut(s)	290
ZrmI	AGTACT	1 cut(s)	2082
Zsp2I	ATGCAT	1 cut(s)	1237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.