Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0013983

Physical Location & Seq

Genomic Coordinates Forward (+)

57562581 .. 57570926

Gene Structure 8346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG388700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3156 bp

ATGGCCTCTACTACTACTACTAGTCTCCAAATCCCCACCTTCCTCTCCCTCAAACCACTCCCTCAACGCCCCACCTTCGCCTTCTCCAACCACCCCACCTCCTTCTCCCGCCCTCCACGCCGTCGTCTCACTCTCTCTCCCGCCCCCATTGCCGCCTCTCTCAAGGAAAATCTGGGCCGGATTGGAAAGACTTGGAGCGACGTGACTAGCTTGAACAGCTGGGTTGTTCGAGACTACTACCGCCTTGTCAACTCTGTCAACTCTTTTGAGCCACAGCTACAGAGGCTCACTGATGACCAGCTTACTGCTAAAACTGCCGAGTTTCGGCGAAGATTGGGACAAGGAGAGACACTTGCGGATATTCAAGCCGAGGCTTTTGCTGTTGTTCGTGAAGCTGCGAAACGGAAGCTTGGTATGCGTCATTTTGATGTTCAGATTATTGGTGGGGCGGTGCTTCATGATGGGTCCATTGCAGAAATGAAGACCGGAGAAGGGAAAACGTTGGTTTCCACATTAGCAGCATATCTTAATGCCCTGACTAGCGAAGGTGTTCATGTGGTCACAGTAAATGATTACCTTGCTCAAAGAGATGCTGAGTGGATGGGTCGTGTTCATCGCTTCTTAGGTCTTTCAGTGGGTCTTATTCAGAGAGGGATGACAGCTGACAAGAGGAGATCCAACTATAGATGTGACATAACATACACCAATAATTCAGAACTTGGGTTTGACTATCTACGAGACAATCTTGCCGGAAACAGTGGAGAACTTGTTATGAGATCGCCAAAGCCATTTCATTTTGCAATAGTTGATGAAGTTGACTCAGTTCTTATTGATGAAGGAAGAAATCCATTACTAATTAGTGGCGAGGCTAGTAAAGATGCTGCTCGCTATCCTGTTGCTGCTAAAGTGGCTGAGTTGCTTGTGCGAGGAATTCATTACAATGTAGAACTTAAAGATTACTCAGTTGAGTTGACTGAAGAAGGAATAGCTCTTGCTGAGATGGCTCTTGAAACAAATGACTTATGGGATGAAAATGATCCCTGGGCCAGATTTGTGATGAATGCGTTGAAAGCTAAAGAGTTCTATCGGAAGGATGTGCAATATATTGTCAGAAATGGGAAGGCTCTCATAATCAATGAGCTCACTGGCAGAGTCGAAGATAAGAGAAGGTGGTCTGAGGGTATTCATCAAGCTGTGGAGGGAAAAGAAGGTTTGAAGATTCAGGCTGATTCGGTTGTTATCGCACAAATCACATATCAATCTCTGTTCAAGCTCTACCCAAAGCTATCAGGGATGACTGGCACTGCAAAAACTGAAGAGAAAGAGTTCTTGAAAATGTTCCAAACACCAGTTATTGAAGTACCAACAAATTTGCCAAACATTCGTAATGATTTACCTATTCAAGCTTTTGCGACTGCTCAGGGGAAATGGGAATATGTTCGTCAAGAAGTGGAATACATGTTCAGGCAGGGGCGTCCTGTTTTGGTTGGCACCACCAGTGTTGAGTATTCTGAACACCTGTCTGATCTGTTGAGGGAACATAACATCCCACACAATGTTCTAAATGCACGGCCCAAGTATGCTGCAAGGGAGGCTGAAATTGTTGCCCAAGCTGGACGAAAACATGCCATTACTCTTTCTACTAATATGGCTGGCAGAGGCACTGACATAATCCTAGGGGGGAATCCTAAAATGCTTGCAAAAGAAATCATAGAAGACAGTTTGATTTCATTCCTGACACGAGAAGCTCCTAACATTGACATAGATGGAGAGGCAATTTCACAAAAGGTCTTGTCAAAGATTAAGGTCGGTCCATCATCATTAGCTTTGCTGGCTAAGACAGCGTTAATGGCTAAATATGTTGGCAAAAATGAAGGGAAGAGCTGGACATATAAGGAGGCAAAATCCATGATATCAGAGTCTGTGGAAATGAGTCAATCAAGAGATTTGAAAGAGCTAGAGAGGCTTGTTGATGAGCAGTCTGAGATATACCCTCTTGGCCCTACAATAGCACTTGCTTATCTGTCAGTTTTGAAGGATTGCGAGGTACACTGTTTCAAAGAAGGGTCTGAAGTGAAAAGACTTGGGGGACTTCATGTGATTGGAACATCTTTGCACGAGTCTCGTAGAATAGATAACCAGCTTCGTGGCAGAGCAGGAAGGCAAGGTGATCCAGGATCAACTCGTTTTATGGTGAGCTTGCAGGATGAGATGTTTCAAAAGTTTAATTTTGATACTGAGTGGGCTGTGAGACTTATTTCAAAAATTACTGATGATGAGGATGTACCAATTGAAGGTGATGCCATTGTGAGACAGCTCCTGTCCCTGCAAATTAATGCTGAAAAGTACTTTTTTGGCATAAGAAAGAGCCTGGTTGAGTTTGATGAAGTATTAGAGGTGCAGAGAAAGCATGTTTATGAACTTCGGCAGTCAATTTTAACTGGTGATAATGAAAGTTGTTCCCAGCATGTATTCCAGTACATGCAAGCAGTGGTAGATGAAATTGTCTTTAAAAATGTTGATGCCCTCAAGCATCCAAGAAAATGGAGTTTAAATAAGCTTTTGAAGGAGTTTATGGCAATTGCTGGGAAACTATTGGATGATTCATTTGCAGGAATTACTGAGGAAGCTTTGTTAGAATCTCTTGCGCAGTCACATGAACTGAACTTTAAAGATATTGATGACATTCACCTACCAAACTTGCCAAAACCTCCAAATGCCTTCAGAGGTATCCGCAAGAAGAACTCTTCATTGAAACGTTGGCTTGCTATATGCTCGGATGATTTGACCAAGAATGGAAGGTACCATGCTACTACTAACCTCCTCCGCAAGTACCTTGGAGACTATTTGATTGCTTCATATTTGGATGTTGTTCAAGACTCTGGTTATGATGATACATATGTGAAGGAAGTTGAAAGAGCAGTTATTGTGAAAACCCTTGATTGTTTCTGGAGGGATCACCTTGTAAACATGAACAGGCTAAGTTCAGCGGTGAATGTAAGGAGTTTTGGGCACAGGAATCCTCTTGAAGAATACAAGATTGATGGTTGTCGTTTTTTCATATCTATGCTTAGTGCAACACGAAGGTTGACTGTAGAGTCACTTTTGCAATATTGGTCCTCCCCAATGGAGTCTCAAGAAATTTTTGTATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0006996 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0009657 GO:0009658 GO:0009987 GO:0010109 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019222 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0031323 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW WD40 zf-RING_UBOX

Protein Analysis

1051

Amino Acids

118.77

Weight (kDa)

6.58

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SecA_DEAD	PF07517	74 - 443	1.2e-115	SecA DEAD-like domain
SecA_PP_bind	PF01043	294 - 400	5.3e-29	SecA preprotein cross-linking domain
P-loop_SecA	PF21090	459 - 746	9.2e-66	SecA P-loop domain
SecA_SW	PF07516	763 - 1037	3.8e-42	SecA Wing and Scaffold domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0013983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21650 AT1G21650 AT1G21650
fragaria_vesca	FvH4_2g27750
malus_domestica	MD00G1100600.v1.1
prunus_persica	Prupe.1G490400_v2.0.a1
pyrus_communis	pycom15g30570
rosa_chinensis	RchiOBHm_Chr6g0296621
rosa_laevigata	RLG00000011676
rosa_multiflora	Rmu_sc0001741.1_g000019
rosa_roxburghii	Rroxscaffold_7G00171330 Rroxscaffold_7G00178770
rosa_rugosa	Rorug06G0263700
rosa_samantha	Rh6AG375100 Rh6CG388700
rosa_wichuraiana	Rw6G032720 Rw6G032810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	3097
Acc16I	TGCGCA	1 cut(s)	2649
Acc65I	GGTACC	1 cut(s)	2802
AccB1I	GGYRCC	2 cut(s)	1490, 2802
AciI	CCGC	9 cut(s)	109, 141, 153, 241, 356, 449, 2734, 2827, 2990
AclI	AACGTT	2 cut(s)	500, 2758
AclWI	GGATC	5 cut(s)	669, 1031, 2165, 2185, 2964
AcsI	RAATTY	3 cut(s)	930, 1369, 3141
AcuI	CTGAAG	4 cut(s)	996, 1335, 2091, 2707
AcyI	GRCGYC	1 cut(s)	1474
AfaI	GTAC	7 cut(s)	1362, 2049, 2286, 2348, 2480, 2804, 2834
AfiI	CCNNNNNNNGG	3 cut(s)	324, 492, 2294
AflIII	ACRYGT	1 cut(s)	1458
AhlI	ACTAGT	1 cut(s)	20
AjiI	CACGTC	1 cut(s)	202
AjnI	CCWGG	3 cut(s)	1040, 2173, 2370
AloI	GAACNNNNNNTCC	4 cut(s)	1445, 1477, 1530, 1562
Alw21I	GWGCWC	1 cut(s)	1143
AlwI	GGATC	5 cut(s)	669, 1031, 2165, 2185, 2964
AlwNI	CAGNNNCTG	2 cut(s)	1922, 2320
AoxI	GGCC	5 cut(s)	3, 175, 1044, 1571, 1999
ApeKI	GCWGC	5 cut(s)	395, 518, 881, 899, 1583
ApoI	RAATTY	3 cut(s)	930, 1369, 3141
AseI	ATTAAT	1 cut(s)	2334
Asp700I	GAANNNNTTC	4 cut(s)	549, 1325, 1337, 1437
Asp718I	GGTACC	1 cut(s)	2802
AspA2I	CCTAGG	1 cut(s)	1675
AspLEI	GCGC	1 cut(s)	2650
AspS9I	GGNCC	7 cut(s)	175, 465, 1044, 1572, 1811, 2000, 3117
AsuHPI	GGTGA	7 cut(s)	2180, 2206, 2309, 2456, 2681, 2951, 3004
AvaII	GGWCC	3 cut(s)	465, 1811, 3117
AvrII	CCTAGG	1 cut(s)	1675
BaeGI	GKGCMC	1 cut(s)	3015
BaeI	ACNNNNGTAYC	2 cut(s)	2886, 2919
BanI	GGYRCC	2 cut(s)	1490, 2802
BanII	GRGCYC	1 cut(s)	1143
BauI	CACGAG	2 cut(s)	1740, 2117
BbsI	GAAGAC	2 cut(s)	488, 1722
Bbv12I	GWGCWC	1 cut(s)	1143
BbvI	GCAGC	5 cut(s)	382, 530, 868, 886, 1570
BccI	CCATC	6 cut(s)	455, 595, 994, 1760, 1822, 3038
BceAI	ACGGC	2 cut(s)	105, 1586
BcgI	CGANNNNNNTGC	4 cut(s)	359, 393, 2105, 2139
BciT130I	CCWGG	3 cut(s)	1042, 2175, 2372
BciVI	GTATCC	1 cut(s)	2741
BcuI	ACTAGT	1 cut(s)	20
BfaI	CTAG	6 cut(s)	21, 207, 540, 870, 1676, 1958
BfmI	CTRYAG	3 cut(s)	278, 682, 3093
BfuI	GTATCC	1 cut(s)	2741
BisI	GCNGC	6 cut(s)	153, 396, 519, 882, 900, 1584
BlnI	CCTAGG	1 cut(s)	1675
BlsI	GCNGC	6 cut(s)	154, 397, 520, 883, 901, 1585
BmcAI	AGTACT	1 cut(s)	2348
Bme1390I	CCNGG	3 cut(s)	1042, 2175, 2372
Bme18I	GGWCC	3 cut(s)	465, 1811, 3117
BmgBI	CACGTC	1 cut(s)	202
BmgT120I	GGNCC	7 cut(s)	175, 465, 1044, 1572, 1811, 2000, 3117
BmiI	GGNNCC	3 cut(s)	466, 1492, 2804
BmrFI	CCNGG	3 cut(s)	1042, 2175, 2372
BmsI	GCATC	5 cut(s)	580, 868, 2290, 2512, 2542
BpiI	GAAGAC	2 cut(s)	488, 1722
BpmI	CTGGAG	1 cut(s)	2971
Bpu10I	CCTNAGC	1 cut(s)	1419
BpuEI	CTTGAG	3 cut(s)	146, 2513, 3120
BsaHI	GRCGYC	1 cut(s)	1474
BsaJI	CCNNGG	5 cut(s)	369, 1040, 1041, 1675, 2836
BsaWI	WCCGGW	1 cut(s)	485
BsaXI	ACNNNNNCTCC	6 cut(s)	83, 113, 121, 151, 753, 783
Bsc4I	CCNNNNNNNGG	3 cut(s)	324, 492, 2294
Bse1I	ACTGG	6 cut(s)	1150, 1303, 1349, 1497, 2446, 2476
Bse3DI	GCAATG	2 cut(s)	147, 468
BseBI	CCWGG	3 cut(s)	1042, 2175, 2372
BseDI	CCNNGG	5 cut(s)	369, 1040, 1041, 1675, 2836
BseLI	CCNNNNNNNGG	3 cut(s)	324, 492, 2294
BseMI	GCAATG	2 cut(s)	147, 468
BseNI	ACTGG	6 cut(s)	1150, 1303, 1349, 1497, 2446, 2476
BseRI	GAGGAG	2 cut(s)	685, 2813
BseSI	GKGCMC	1 cut(s)	3015
BseXI	GCAGC	5 cut(s)	382, 530, 868, 886, 1570
BseYI	CCCAGC	3 cut(s)	219, 2463, 2585
BsgI	GTGCAG	1 cut(s)	2420
BshFI	GGCC	5 cut(s)	5, 177, 1046, 1573, 2001
BshNI	GGYRCC	2 cut(s)	1490, 2802
BsiHKAI	GWGCWC	1 cut(s)	1143
BsiSI	CCGG	3 cut(s)	178, 486, 750
BslFI	GGGAC	3 cut(s)	351, 2103, 2308
BslI	CCNNNNNNNGG	3 cut(s)	324, 492, 2294
BsmBI	CGTCTC	1 cut(s)	131
BsmFI	GGGAC	3 cut(s)	351, 2103, 2308
BsmI	GAATGC	1 cut(s)	1066
BsnI	GGCC	5 cut(s)	5, 177, 1046, 1573, 2001
Bsp1286I	GDGCHC	2 cut(s)	1143, 3015
Bsp143I	GATC	7 cut(s)	674, 776, 1036, 1525, 2170, 2177, 2956
BspACI	CCGC	9 cut(s)	109, 141, 153, 241, 356, 449, 2734, 2827, 2990
BspANI	GGCC	5 cut(s)	5, 177, 1046, 1573, 2001
BspHI	TCATGA	2 cut(s)	457, 3152
BspLI	GGNNCC	3 cut(s)	466, 1492, 2804
BspPI	GGATC	5 cut(s)	669, 1031, 2165, 2185, 2964
BspQI	GCTCTTC	1 cut(s)	1874
BspT107I	GGYRCC	2 cut(s)	1490, 2802
BsrDI	GCAATG	2 cut(s)	147, 468
BsrI	ACTGG	6 cut(s)	1150, 1303, 1349, 1497, 2446, 2476
BssECI	CCNNGG	5 cut(s)	369, 1040, 1041, 1675, 2836
BssMI	GATC	7 cut(s)	674, 776, 1036, 1525, 2170, 2177, 2956
BssNI	GRCGYC	1 cut(s)	1474
BssSI	CACGAG	2 cut(s)	1740, 2117
BssT1I	CCWWGG	2 cut(s)	1675, 2836
Bst2BI	CACGAG	2 cut(s)	1740, 2117
Bst2UI	CCWGG	3 cut(s)	1042, 2175, 2372
Bst4CI	ACNGT	5 cut(s)	565, 758, 1721, 2054, 3094
Bst6I	CTCTTC	3 cut(s)	1311, 1874, 2752
BstACI	GRCGYC	1 cut(s)	1474
BstC8I	GCNNGC	7 cut(s)	886, 1654, 1698, 1833, 2201, 2487, 2766
BstHHI	GCGC	1 cut(s)	2650
BstKTI	GATC	7 cut(s)	677, 779, 1039, 1528, 2173, 2180, 2959
BstMBI	GATC	7 cut(s)	674, 776, 1036, 1525, 2170, 2177, 2956
BstNI	CCWGG	3 cut(s)	1042, 2175, 2372
BstNSI	RCATGY	5 cut(s)	1462, 1628, 2414, 2471, 2485
BstSCI	CCNGG	3 cut(s)	1040, 2173, 2370
BstSFI	CTRYAG	3 cut(s)	278, 682, 3093
BstSLI	GKGCMC	1 cut(s)	3015
BstV1I	GCAGC	5 cut(s)	382, 530, 868, 886, 1570
BstV2I	GAAGAC	2 cut(s)	488, 1722
BstX2I	RGATCY	1 cut(s)	674
BstXI	CCANNNNNNTGG	2 cut(s)	2147, 2544
BstYI	RGATCY	1 cut(s)	674
BsuI	GTATCC	1 cut(s)	2741
BsuRI	GGCC	5 cut(s)	5, 177, 1046, 1573, 2001
BtgZI	GCGATG	1 cut(s)	599
BtrI	CACGTC	1 cut(s)	202
BtsI	GCAGTG	2 cut(s)	1302, 2496
BtsIMutI	CAGTG	9 cut(s)	288, 639, 763, 1143, 1302, 1504, 1662, 2050, 2496
Cac8I	GCNNGC	7 cut(s)	886, 1654, 1698, 1833, 2201, 2487, 2766
CaiI	CAGNNNCTG	2 cut(s)	1922, 2320
CciI	TCATGA	2 cut(s)	457, 3152
CfoI	GCGC	1 cut(s)	2650
Cfr13I	GGNCC	7 cut(s)	175, 465, 1044, 1572, 1811, 2000, 3117
CseI	GACGC	2 cut(s)	407, 1463
Csp6I	GTAC	7 cut(s)	1361, 2048, 2285, 2347, 2479, 2803, 2833
CspCI	CAANNNNNGTGG	2 cut(s)	1483, 1518
CviQI	GTAC	7 cut(s)	1361, 2048, 2285, 2347, 2479, 2803, 2833
DpnI	GATC	7 cut(s)	676, 778, 1038, 1527, 2172, 2179, 2958
DpnII	GATC	7 cut(s)	674, 776, 1036, 1525, 2170, 2177, 2956
DraI	TTTAAA	3 cut(s)	2512, 2553, 2671
DrdI	GACNNNNNNGTC	1 cut(s)	3097
DseDI	GACNNNNNNGTC	1 cut(s)	3097
Eam1104I	CTCTTC	3 cut(s)	1311, 1874, 2752
EarI	CTCTTC	3 cut(s)	1311, 1874, 2752
Ecl136II	GAGCTC	1 cut(s)	1141
Eco130I	CCWWGG	2 cut(s)	1675, 2836
Eco24I	GRGCYC	1 cut(s)	1143
Eco32I	GATATC	1 cut(s)	1914
Eco47I	GGWCC	3 cut(s)	465, 1811, 3117
Eco53kI	GAGCTC	1 cut(s)	1141
Eco57I	CTGAAG	4 cut(s)	996, 1335, 2091, 2707
EcoICRI	GAGCTC	1 cut(s)	1141
EcoRI	GAATTC	1 cut(s)	930
EcoRII	CCWGG	3 cut(s)	1040, 2173, 2370
EcoRV	GATATC	1 cut(s)	1914
EcoT14I	CCWWGG	2 cut(s)	1675, 2836
EcoT38I	GRGCYC	1 cut(s)	1143
ErhI	CCWWGG	2 cut(s)	1675, 2836
Esp3I	CGTCTC	1 cut(s)	131
FaqI	GGGAC	3 cut(s)	351, 2103, 2308
FauI	CCCGC	2 cut(s)	116, 148
FauNDI	CATATG	1 cut(s)	2899
Fnu4HI	GCNGC	6 cut(s)	153, 396, 519, 882, 900, 1584
FriOI	GRGCYC	1 cut(s)	1143
Fsp4HI	GCNGC	6 cut(s)	153, 396, 519, 882, 900, 1584
FspBI	CTAG	6 cut(s)	21, 207, 540, 870, 1676, 1958
FspI	TGCGCA	1 cut(s)	2649
GlaI	GCGC	1 cut(s)	2649
GluI	GCNGC	6 cut(s)	153, 396, 519, 882, 900, 1584
GsaI	CCCAGC	3 cut(s)	223, 2467, 2589
GsuI	CTGGAG	1 cut(s)	2971
HaeIII	GGCC	5 cut(s)	5, 177, 1046, 1573, 2001
HapII	CCGG	3 cut(s)	178, 486, 750
HgaI	GACGC	2 cut(s)	407, 1463
HhaI	GCGC	1 cut(s)	2650
Hin1I	GRCGYC	1 cut(s)	1474
Hin6I	GCGC	1 cut(s)	2648
HinP1I	GCGC	1 cut(s)	2648
HincII	GTYRAC	5 cut(s)	250, 259, 817, 972, 3090
HindII	GTYRAC	5 cut(s)	250, 259, 817, 972, 3090
HindIII	AAGCTT	4 cut(s)	407, 1404, 2558, 2628
HpaII	CCGG	3 cut(s)	178, 486, 750
HphI	GGTGA	7 cut(s)	2180, 2206, 2309, 2456, 2681, 2951, 3004
Hpy166II	GTNNAC	7 cut(s)	250, 259, 817, 972, 2050, 2968, 3090
Hpy8I	GTNNAC	7 cut(s)	250, 259, 817, 972, 2050, 2968, 3090
Hpy99I	CGWCG	2 cut(s)	126, 203
HpyCH4III	ACNGT	5 cut(s)	565, 758, 1721, 2054, 3094
HpyCH4IV	ACGT	3 cut(s)	201, 500, 2758
HpySE526I	ACGT	3 cut(s)	201, 500, 2758
Hsp92I	GRCGYC	1 cut(s)	1474
HspAI	GCGC	1 cut(s)	2648
KpnI	GGTACC	1 cut(s)	2806
Kzo9I	GATC	7 cut(s)	674, 776, 1036, 1525, 2170, 2177, 2956
LguI	GCTCTTC	1 cut(s)	1874
LmnI	GCTCC	3 cut(s)	195, 1753, 2322
Lsp1109I	GCAGC	5 cut(s)	382, 530, 868, 886, 1570
LweI	GCATC	5 cut(s)	580, 868, 2290, 2512, 2542
MaeI	CTAG	6 cut(s)	21, 207, 540, 870, 1676, 1958
MaeII	ACGT	3 cut(s)	201, 500, 2758
MaeIII	GTNAC	5 cut(s)	202, 559, 689, 2652, 3099
MalI	GATC	7 cut(s)	676, 778, 1038, 1527, 2172, 2179, 2958
MboI	GATC	7 cut(s)	674, 776, 1036, 1525, 2170, 2177, 2956
MfeI	CAATTG	2 cut(s)	2289, 2580
MflI	RGATCY	1 cut(s)	674
MhlI	GDGCHC	2 cut(s)	1143, 3015
MlyI	GAGTC	8 cut(s)	812, 1161, 1928, 1942, 2129, 2873, 3107, 3140
MmeI	TCCRAC	2 cut(s)	111, 702
MroXI	GAANNNNTTC	4 cut(s)	549, 1325, 1337, 1437
MslI	CAYNNNNRTG	4 cut(s)	426, 939, 2415, 3065
MspA1I	CMGCKG	3 cut(s)	219, 662, 2990
MspI	CCGG	3 cut(s)	178, 486, 750
MspR9I	CCNGG	3 cut(s)	1042, 2175, 2372
MunI	CAATTG	2 cut(s)	2289, 2580
Mva1269I	GAATGC	1 cut(s)	1066
MvaI	CCWGG	3 cut(s)	1042, 2175, 2372
NdeI	CATATG	1 cut(s)	2899
NdeII	GATC	7 cut(s)	674, 776, 1036, 1525, 2170, 2177, 2956
NlaIV	GGNNCC	3 cut(s)	466, 1492, 2804
NmeAIII	GCCGAG	2 cut(s)	343, 394
NmuCI	GTSAC	5 cut(s)	202, 559, 689, 2652, 3099
NsbI	TGCGCA	1 cut(s)	2649
NspI	RCATGY	5 cut(s)	1462, 1628, 2414, 2471, 2485
PagI	TCATGA	2 cut(s)	457, 3152
PasI	CCCWGGG	1 cut(s)	1041
PciI	ACATGT	1 cut(s)	1458
PciSI	GCTCTTC	1 cut(s)	1874
PctI	GAATGC	1 cut(s)	1066
PdmI	GAANNNNTTC	4 cut(s)	549, 1325, 1337, 1437
PfeI	GAWTC	6 cut(s)	1219, 1229, 1684, 2603, 2639, 3019
PfoI	TCCNGGA	1 cut(s)	2173
PkrI	GCNGC	6 cut(s)	154, 397, 520, 883, 901, 1585
PleI	GAGTC	8 cut(s)	812, 1160, 1927, 1941, 2128, 2873, 3106, 3139
PpsI	GAGTC	8 cut(s)	812, 1160, 1927, 1941, 2128, 2873, 3106, 3139
PscI	ACATGT	1 cut(s)	1458
PshBI	ATTAAT	1 cut(s)	2334
Psp124BI	GAGCTC	1 cut(s)	1143
Psp1406I	AACGTT	2 cut(s)	500, 2758
Psp6I	CCWGG	3 cut(s)	1040, 2173, 2370
PspFI	CCCAGC	3 cut(s)	219, 2463, 2585
PspGI	CCWGG	3 cut(s)	1040, 2173, 2370
PspN4I	GGNNCC	3 cut(s)	466, 1492, 2804
PspPI	GGNCC	7 cut(s)	175, 465, 1044, 1572, 1811, 2000, 3117
PstNI	CAGNNNCTG	2 cut(s)	1922, 2320
PsuI	RGATCY	1 cut(s)	674
PvuII	CAGCTG	2 cut(s)	219, 662
RsaI	GTAC	7 cut(s)	1362, 2049, 2286, 2348, 2480, 2804, 2834
RsaNI	GTAC	7 cut(s)	1361, 2048, 2285, 2347, 2479, 2803, 2833
RseI	CAYNNNNRTG	4 cut(s)	426, 939, 2415, 3065
SacI	GAGCTC	1 cut(s)	1143
SapI	GCTCTTC	1 cut(s)	1874
SatI	GCNGC	6 cut(s)	153, 396, 519, 882, 900, 1584
Sau3AI	GATC	7 cut(s)	674, 776, 1036, 1525, 2170, 2177, 2956
Sau96I	GGNCC	7 cut(s)	175, 465, 1044, 1572, 1811, 2000, 3117
ScaI	AGTACT	1 cut(s)	2348
SchI	GAGTC	8 cut(s)	812, 1161, 1928, 1942, 2129, 2873, 3107, 3140
ScrFI	CCNGG	3 cut(s)	1042, 2175, 2372
SduI	GDGCHC	2 cut(s)	1143, 3015
SfaNI	GCATC	5 cut(s)	580, 868, 2290, 2512, 2542
SfcI	CTRYAG	3 cut(s)	278, 682, 3093
SinI	GGWCC	3 cut(s)	465, 1811, 3117
SmiMI	CAYNNNNRTG	4 cut(s)	426, 939, 2415, 3065
SmlI	CTYRAG	3 cut(s)	161, 2528, 3135
SmoI	CTYRAG	3 cut(s)	161, 2528, 3135
SpeI	ACTAGT	1 cut(s)	20
SsiI	CCGC	9 cut(s)	109, 141, 153, 241, 356, 449, 2734, 2827, 2990
SspI	AATATT	1 cut(s)	3113
SspMI	CTAG	6 cut(s)	21, 207, 540, 870, 1676, 1958
SstI	GAGCTC	1 cut(s)	1143
StyD4I	CCNGG	3 cut(s)	1040, 2173, 2370
StyI	CCWWGG	2 cut(s)	1675, 2836
TaaI	ACNGT	5 cut(s)	565, 758, 1721, 2054, 3094
TaiI	ACGT	3 cut(s)	204, 503, 2761
TaqI	TCGA	2 cut(s)	229, 1155
TaqII	GACCGA	1 cut(s)	1799
TatI	WGTACW	2 cut(s)	2346, 2478
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	6 cut(s)	1219, 1229, 1684, 2603, 2639, 3019
TscAI	CASTG	9 cut(s)	295, 639, 763, 1150, 1309, 1504, 1669, 2057, 2496
TseFI	GTSAC	5 cut(s)	202, 559, 689, 2652, 3099
TseI	GCWGC	5 cut(s)	395, 518, 881, 899, 1583
Tsp45I	GTSAC	5 cut(s)	202, 559, 689, 2652, 3099
TspGWI	ACGGA	1 cut(s)	418
TspRI	CASTG	9 cut(s)	295, 639, 763, 1150, 1309, 1504, 1669, 2057, 2496
VpaK11BI	GGWCC	3 cut(s)	465, 1811, 3117
VspI	ATTAAT	1 cut(s)	2334
XapI	RAATTY	3 cut(s)	930, 1369, 3141
XceI	RCATGY	5 cut(s)	1462, 1628, 2414, 2471, 2485
XmaJI	CCTAGG	1 cut(s)	1675
XmnI	GAANNNNTTC	4 cut(s)	549, 1325, 1337, 1437
XspI	CTAG	6 cut(s)	21, 207, 540, 870, 1676, 1958
ZrmI	AGTACT	1 cut(s)	2348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.