Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0013983

Physical Location & Seq

Genomic Coordinates Reverse (-)

11600861 .. 11609350

Gene Structure 8490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011676

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3252 bp

ATGGCCTCTACTACTACTAGTCTCCAAATCCCCACTTTCCTCTCCCTCAAACCACTCCCTCAACGCCCCACCTTCGCCTTCGCCTTCTCCAACCACCCCACCTCCTTCTCCTCCTCCCGCCCTCCACGCCGTCGTCTCACTCTCTCTCCCGCCCCCATTGCCGCCGCCTCTCTCAAGGAAAATCTCGGCCGGATTGGAAAGACTTGGAACGACGTGACTAGCTTGAACAGCTGGGTTGTTCGAGACTACTACCGCCTTGTGAATTCTGTCAACTCTTTTGAGCCACAGCTACAGAGGCTCACTGATGACCAGCTTACTGCTAAAACTGCCGAGTTTCGGCGAAGATTGGGACAAGGAGAGACACTTGCGGATATTCAAGCTGAGGCTTTTGCTGTTGTTCGTGAAGCTGCGAAACGGAAGCTTGGTATGCGTCATTTTGATGTTCAGATTATTGGCGGGGCGGTGCTTCATGATGGGTCCATTGCAGAAATGAAGACCGGAGAGGGGAAAACGTTGGTTTCCACATTAGCAGCATATCTTAATGCCCTGATTGGCAAAGGTGTTCATGTGGTCACAGTAAATGATTACCTTGCTCAAAGAGATGCTGAGTGGATGGGTCGTGTTCATCGCTTCTTAGGTCTTTCAGTGGGTCTTATTCAGAGAGGGATGACAGCTGACAAGAGGAGATCCAACTATAGATGTGACATAACATACACCAATAATTCAGAACTTGGGTTTGACTATCTACGAGACAATCTTGCCGGAAACAGTGGAGAACTTGTTATGAGATCGCCAAAGCCATTTCATTTTGCAATAGTTGATGAAGTTGACTCAGTTCTTATTGATGAAGGAAGAAATCCATTACTAATTAGTGGCGAGGCTAGTAAAGATGCTGCTCGCTATCCTGTTGCTGCTAAAGTGGCTGAGTTGCTTGTGCAAGGAATTCATTACAATGTAGAACTTAAAGATTACTCAGTTGAGTTGACTGAAGAAGGAATAGCCCTTGCTGAGATGGCTCTTGAAACAAACGACTTATGGGATGAAAATGATCCCTGGGCCAGATTTGTGATGAATGCGTTGAAAGCTAAAGAGTTCTATCGGAAGGATGTGCAATATATTGTCAGAAATGGGAAGGCTCTCATAATCAATGAGCTCACTGGCAGAGTCGAAGATAAGAGAAGGTGGTCTGAGGGTATTCATCAAGCTGTGGAGGGTAAAGAAGGTTTAAAGATTCAGGCTGATTCGGTTGTTATCGCACAAATCACATATCAATCTCTGTTCAAGCTCTACCCAAAGCTATCAGGGATGACTGGCACTGCAAAAACTGAAGAGAAAGAGTTCTTGAAAATGTTCCAAACACCAGTTATTGAAGTGCCAACAAATTTGCCAAACATTCGTAATGATTTACCTATTCAAGCTTTTGCGACTGCTCAGGGGAAATGGGAATATGTTCGTCAAGAAGTGGAATATATGTTCAGGCAGGGGCGTCCTGTTTTGGTTGGCACCACCAGTGTTGAGAATTCTGAACACCTGTCTGATCTGTTGAGGGAACATAACATCCCACACAATGTTCTAAATGCACGGCCCAAGTATGCTGCAAGGGAGGCTGAAATTGTTGCCCAAGCTGGACGAAAACATGCCATTACTCTTTCTACTAATATGGCTGGCAGAGGCACTGACATAATCCTAGGAGGGAATCCTAAAATGCTTGCAAAAGAAATCATAGAAGACAGCTTGATTTCATTCCTGACACGAGAAGCTCCTAACATTGACATAGATGGAGAGGCAATTTCACAAAAGGTATTGTCAAAGATAAAGGTCGGTCCATCATCATTAGCTTTGCTGGCTAAGACAGCGTTAATGGCTAAATATGTTGGCAAAAATGAAGGGAAGAGCTGGACATATCAGGAGGCAAAATCCATGATATCAGAGTCTGTGGAAATGAGTCAGTCAAGAGATTTGAAAGAGCTAGAGAGGCTTGCTGATGAACAGTCTGAGATATACCCTCTTGGCCCTACAATAGCACTTGCTTATCTGTCAGTTTTGAAGGATTGCGAGGTACACTGTTTCAAAGAAGGGTCTGAAGTGAAAAGGCTTGGGGGCCTTCATGTGATTGGAACATCTTTGCACGAGTCTCGTAGAATAGATAACCAGCTTCGTGGCAGAGCAGGAAGGCAAGGTGATCCAGGATCAACTCGATTTATGGTGAGCTTGCAGGATGAGATGTTTCAAAAGTTTAATTTTGATACTGAGTGGGCTGTGAGACTTATTTCAAAAATTACTGATGATGAGGACGTACCAATTGAAGGTGATGCCATTGTGAGACAGCTCCTGTCCCTGCAAATTAATGCTGAAAAGTACTTTTTTGGCATAAGAAAGAGCCTGGTTGAGTTTGATGAAGTATTAGAGGTGCAGAGAAAGCATGTTTATGAACTTCGGCAGTCAATTTTAACTGGTGATAATGAAAGTTGTTCCCAGCATGTATTCCAGTACATGCAAGCAGTGGTAGATGAAATTGTCTTTAAAAATGTTGACGCCCTCAAGCATCCAAGAAAATGGAGTTTGAATAAGCTTTTGAAGGAGTTTATGGCAATTTCTGGGAAACTATTGGATGATTCATTTGCAGGAATTACTGAGGAATCTTTGTTAGAATCTCTTGCGCAGTCACATGAACTGAACTTTAAAGATATTGATGACATTCACCTTCTAAACTTGCCAAAACCTCCGAATGCCTTCAGAGGTATCCGCAAGAAGAACTCTTCATTGAAACGTTGGCTTGCTATATGCTCGGATGATTTGACCAAGAATGGAAGGTACCATGCTACTACTAACCTCCTCCGCAAGTACCTAGGAGACTATTTGATTGCTTCATATTTGGATGTTGTTCAAGACTCTGGTTATGATGATACATATGTGAAAGAAGTTGAAAGAGCAGTTATTGTGAAAACCCTTGATTGTTTCTGGAGGGATCACCTTGTAAACATGAACAGGCTAAGTTCAGCGGTGAATGTAAGGAGTTTTGGGCACAGGAATCCTCTTGAAGAATACAAGATTGATGGTTGTCGATTTTTCATATCTATGCTTAGTGCAACACGAAGCTATGGCTATAAAGAATTTATACTGTGGTTGTATAGTCATGGTGATTGTTTGGATGGTTGCTTGAAGGAACCATGGTTTGTATCTTGGTGGGCTAGTATGTCAACCAAACTGATCTTGCCTGGATTGGACCCGACAAGTGCACTGTTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0006996 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0009657 GO:0009658 GO:0009987 GO:0010109 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019222 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0031323 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW WD40 zf-RING_UBOX

Protein Analysis

1084

Amino Acids

122.24

Weight (kDa)

6.6

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SecA_DEAD	PF07517	77 - 447	2.4e-116	SecA DEAD-like domain
SecA_PP_bind	PF01043	298 - 404	4.8e-29	SecA preprotein cross-linking domain
P-loop_SecA	PF21090	463 - 750	3.6e-66	SecA P-loop domain
SecA_SW	PF07516	767 - 1033	4.6e-40	SecA Wing and Scaffold domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0013983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21650 AT1G21650 AT1G21650
fragaria_vesca	FvH4_2g27750
malus_domestica	MD00G1100600.v1.1
prunus_persica	Prupe.1G490400_v2.0.a1
pyrus_communis	pycom15g30570
rosa_chinensis	RchiOBHm_Chr6g0296621
rosa_laevigata	RLG00000011676
rosa_multiflora	Rmu_sc0001741.1_g000019
rosa_roxburghii	Rroxscaffold_7G00171330 Rroxscaffold_7G00178770
rosa_rugosa	Rorug06G0263700
rosa_samantha	Rh6AG375100 Rh6CG388700
rosa_wichuraiana	Rw6G032720 Rw6G032810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	2661
Acc65I	GGTACC	1 cut(s)	2814
AccB1I	GGYRCC	2 cut(s)	1502, 2814
AclI	AACGTT	2 cut(s)	512, 2770
AclWI	GGATC	5 cut(s)	681, 1043, 2177, 2197, 2976
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	5 cut(s)	262, 942, 1381, 1519, 3113
AcuI	CTGAAG	4 cut(s)	1008, 1347, 2103, 2719
AcyI	GRCGYC	2 cut(s)	1486, 2535
AfaI	GTAC	6 cut(s)	2061, 2298, 2360, 2492, 2816, 2846
AfiI	CCNNNNNNNGG	3 cut(s)	336, 504, 2306
AhlI	ACTAGT	1 cut(s)	17
AjiI	CACGTC	1 cut(s)	214
AjnI	CCWGG	4 cut(s)	1052, 2185, 2382, 3217
AloI	GAACNNNNNNTCC	4 cut(s)	1457, 1489, 1542, 1574
Alw21I	GWGCWC	2 cut(s)	1155, 3241
Alw26I	GTCTC	9 cut(s)	26, 140, 237, 353, 744, 2139, 2257, 2317, 2847
Alw44I	GTGCAC	1 cut(s)	3237
AlwI	GGATC	5 cut(s)	681, 1043, 2177, 2197, 2976
AlwNI	CAGNNNCTG	2 cut(s)	1934, 2332
AoxI	GGCC	6 cut(s)	3, 187, 1056, 1583, 2011, 2101
ApaLI	GTGCAC	1 cut(s)	3237
ApeKI	GCWGC	5 cut(s)	407, 530, 893, 911, 1595
ApoI	RAATTY	5 cut(s)	262, 942, 1381, 1519, 3113
AseI	ATTAAT	1 cut(s)	2346
Asp700I	GAANNNNTTC	4 cut(s)	1337, 1349, 1449, 2732
Asp718I	GGTACC	1 cut(s)	2814
AspA2I	CCTAGG	2 cut(s)	1687, 2848
AspLEI	GCGC	1 cut(s)	2662
AspS9I	GGNCC	7 cut(s)	477, 1056, 1584, 1823, 2012, 2101, 3226
AsuHPI	GGTGA	8 cut(s)	2192, 2218, 2321, 2468, 2693, 2963, 3016, 3152
AvaII	GGWCC	3 cut(s)	477, 1823, 3226
AvrII	CCTAGG	2 cut(s)	1687, 2848
BaeGI	GKGCMC	2 cut(s)	3027, 3241
BaeI	ACNNNNGTAYC	2 cut(s)	2898, 2931
BanI	GGYRCC	2 cut(s)	1502, 2814
BanII	GRGCYC	1 cut(s)	1155
BauI	CACGAG	2 cut(s)	1752, 2129
BbsI	GAAGAC	2 cut(s)	500, 1734
Bbv12I	GWGCWC	2 cut(s)	1155, 3241
BbvCI	CCTCAGC	1 cut(s)	381
BbvI	GCAGC	5 cut(s)	394, 542, 880, 898, 1582
BccI	CCATC	7 cut(s)	467, 607, 1006, 1772, 1834, 3050, 3146
BceAI	ACGGC	2 cut(s)	114, 1598
BcgI	CGANNNNNNTGC	2 cut(s)	2117, 2151
BciT130I	CCWGG	4 cut(s)	1054, 2187, 2384, 3219
BciVI	GTATCC	1 cut(s)	2753
BcoDI	GTCTC	9 cut(s)	26, 140, 237, 353, 744, 2139, 2257, 2317, 2847
BcuI	ACTAGT	1 cut(s)	17
BfaI	CTAG	7 cut(s)	18, 219, 882, 1688, 1970, 2849, 3192
BfmI	CTRYAG	2 cut(s)	290, 694
BfuI	GTATCC	1 cut(s)	2753
BisI	GCNGC	7 cut(s)	162, 165, 408, 531, 894, 912, 1596
BlnI	CCTAGG	2 cut(s)	1687, 2848
BlsI	GCNGC	7 cut(s)	163, 166, 409, 532, 895, 913, 1597
BmcAI	AGTACT	1 cut(s)	2360
Bme1390I	CCNGG	4 cut(s)	1054, 2187, 2384, 3219
Bme18I	GGWCC	3 cut(s)	477, 1823, 3226
BmgBI	CACGTC	1 cut(s)	214
BmgT120I	GGNCC	7 cut(s)	477, 1056, 1584, 1823, 2012, 2101, 3226
BmiI	GGNNCC	6 cut(s)	478, 1504, 2102, 2816, 3168, 3228
BmrFI	CCNGG	4 cut(s)	1054, 2187, 2384, 3219
BmsI	GCATC	4 cut(s)	592, 880, 2302, 2554
BpiI	GAAGAC	2 cut(s)	500, 1734
BpmI	CTGGAG	1 cut(s)	2983
Bpu10I	CCTNAGC	2 cut(s)	381, 1431
BpuEI	CTTGAG	2 cut(s)	158, 2525
BsaHI	GRCGYC	2 cut(s)	1486, 2535
BsaJI	CCNNGG	5 cut(s)	1052, 1053, 1687, 2848, 3170
BsaWI	WCCGGW	1 cut(s)	497
BsaXI	ACNNNNNCTCC	6 cut(s)	86, 116, 130, 160, 765, 795
Bsc4I	CCNNNNNNNGG	3 cut(s)	336, 504, 2306
Bse1I	ACTGG	6 cut(s)	1162, 1315, 1361, 1509, 2458, 2488
Bse3DI	GCAATG	2 cut(s)	156, 480
BseBI	CCWGG	4 cut(s)	1054, 2187, 2384, 3219
BseDI	CCNNGG	5 cut(s)	1052, 1053, 1687, 2848, 3170
BseLI	CCNNNNNNNGG	3 cut(s)	336, 504, 2306
BseMI	GCAATG	2 cut(s)	156, 480
BseNI	ACTGG	6 cut(s)	1162, 1315, 1361, 1509, 2458, 2488
BseRI	GAGGAG	4 cut(s)	100, 103, 697, 2825
BseSI	GKGCMC	2 cut(s)	3027, 3241
BseX3I	CGGCCG	1 cut(s)	187
BseXI	GCAGC	5 cut(s)	394, 542, 880, 898, 1582
BseYI	CCCAGC	2 cut(s)	231, 2475
BsgI	GTGCAG	1 cut(s)	2432
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	6 cut(s)	5, 189, 1058, 1585, 2013, 2103
BshNI	GGYRCC	2 cut(s)	1502, 2814
BsiEI	CGRYCG	1 cut(s)	190
BsiHKAI	GWGCWC	2 cut(s)	1155, 3241
BsiSI	CCGG	3 cut(s)	190, 498, 762
BslFI	GGGAC	2 cut(s)	363, 2320
BslI	CCNNNNNNNGG	3 cut(s)	336, 504, 2306
BsmAI	GTCTC	9 cut(s)	26, 140, 237, 353, 744, 2139, 2257, 2317, 2847
BsmBI	CGTCTC	1 cut(s)	140
BsmFI	GGGAC	2 cut(s)	363, 2320
BsmI	GAATGC	2 cut(s)	1078, 2734
BsnI	GGCC	6 cut(s)	5, 189, 1058, 1585, 2013, 2103
Bsp1286I	GDGCHC	3 cut(s)	1155, 3027, 3241
Bsp143I	GATC	8 cut(s)	686, 788, 1048, 1537, 2182, 2189, 2968, 3210
Bsp19I	CCATGG	1 cut(s)	3170
BspANI	GGCC	6 cut(s)	5, 189, 1058, 1585, 2013, 2103
BspHI	TCATGA	1 cut(s)	469
BspLI	GGNNCC	6 cut(s)	478, 1504, 2102, 2816, 3168, 3228
BspPI	GGATC	5 cut(s)	681, 1043, 2177, 2197, 2976
BspQI	GCTCTTC	1 cut(s)	1886
BspT107I	GGYRCC	2 cut(s)	1502, 2814
BsrDI	GCAATG	2 cut(s)	156, 480
BsrI	ACTGG	6 cut(s)	1162, 1315, 1361, 1509, 2458, 2488
BssECI	CCNNGG	5 cut(s)	1052, 1053, 1687, 2848, 3170
BssMI	GATC	8 cut(s)	686, 788, 1048, 1537, 2182, 2189, 2968, 3210
BssNI	GRCGYC	2 cut(s)	1486, 2535
BssSI	CACGAG	2 cut(s)	1752, 2129
BssT1I	CCWWGG	3 cut(s)	1687, 2848, 3170
Bst2BI	CACGAG	2 cut(s)	1752, 2129
Bst2UI	CCWGG	4 cut(s)	1054, 2187, 2384, 3219
Bst4CI	ACNGT	6 cut(s)	577, 770, 1992, 2066, 3123, 3243
Bst6I	CTCTTC	3 cut(s)	1323, 1886, 2764
BstACI	GRCGYC	2 cut(s)	1486, 2535
BstC8I	GCNNGC	8 cut(s)	898, 1666, 1710, 1845, 1980, 2213, 2499, 2778
BstDSI	CCRYGG	1 cut(s)	3170
BstHHI	GCGC	1 cut(s)	2662
BstKTI	GATC	8 cut(s)	689, 791, 1051, 1540, 2185, 2192, 2971, 3213
BstMAI	GTCTC	9 cut(s)	26, 140, 237, 353, 744, 2139, 2257, 2317, 2847
BstMBI	GATC	8 cut(s)	686, 788, 1048, 1537, 2182, 2189, 2968, 3210
BstMCI	CGRYCG	1 cut(s)	190
BstNI	CCWGG	4 cut(s)	1054, 2187, 2384, 3219
BstNSI	RCATGY	4 cut(s)	1640, 2426, 2483, 2497
BstSCI	CCNGG	4 cut(s)	1052, 2185, 2382, 3217
BstSFI	CTRYAG	2 cut(s)	290, 694
BstSLI	GKGCMC	2 cut(s)	3027, 3241
BstV1I	GCAGC	5 cut(s)	394, 542, 880, 898, 1582
BstV2I	GAAGAC	2 cut(s)	500, 1734
BstX2I	RGATCY	1 cut(s)	686
BstXI	CCANNNNNNTGG	2 cut(s)	2159, 2556
BstYI	RGATCY	1 cut(s)	686
BstZI	CGGCCG	1 cut(s)	187
BsuI	GTATCC	1 cut(s)	2753
BsuRI	GGCC	6 cut(s)	5, 189, 1058, 1585, 2013, 2103
BtgI	CCRYGG	1 cut(s)	3170
BtgZI	GCGATG	1 cut(s)	611
BtrI	CACGTC	1 cut(s)	214
BtsI	GCAGTG	2 cut(s)	1314, 2508
Cac8I	GCNNGC	8 cut(s)	898, 1666, 1710, 1845, 1980, 2213, 2499, 2778
CaiI	CAGNNNCTG	2 cut(s)	1934, 2332
CciI	TCATGA	1 cut(s)	469
CfoI	GCGC	1 cut(s)	2662
Cfr13I	GGNCC	7 cut(s)	477, 1056, 1584, 1823, 2012, 2101, 3226
CseI	GACGC	3 cut(s)	419, 1475, 2543
Csp6I	GTAC	6 cut(s)	2060, 2297, 2359, 2491, 2815, 2845
CspCI	CAANNNNNGTGG	2 cut(s)	1495, 1530
CviQI	GTAC	6 cut(s)	2060, 2297, 2359, 2491, 2815, 2845
DpnI	GATC	8 cut(s)	688, 790, 1050, 1539, 2184, 2191, 2970, 3212
DpnII	GATC	8 cut(s)	686, 788, 1048, 1537, 2182, 2189, 2968, 3210
DraI	TTTAAA	3 cut(s)	1227, 2524, 2683
EaeI	YGGCCR	1 cut(s)	187
EagI	CGGCCG	1 cut(s)	187
Eam1104I	CTCTTC	3 cut(s)	1323, 1886, 2764
EarI	CTCTTC	3 cut(s)	1323, 1886, 2764
Ecl136II	GAGCTC	1 cut(s)	1153
EclXI	CGGCCG	1 cut(s)	187
Eco130I	CCWWGG	3 cut(s)	1687, 2848, 3170
Eco24I	GRGCYC	1 cut(s)	1155
Eco32I	GATATC	1 cut(s)	1926
Eco47I	GGWCC	3 cut(s)	477, 1823, 3226
Eco52I	CGGCCG	1 cut(s)	187
Eco53kI	GAGCTC	1 cut(s)	1153
Eco57I	CTGAAG	4 cut(s)	1008, 1347, 2103, 2719
EcoICRI	GAGCTC	1 cut(s)	1153
EcoO109I	RGGNCCY	1 cut(s)	2101
EcoRI	GAATTC	3 cut(s)	262, 942, 1519
EcoRII	CCWGG	4 cut(s)	1052, 2185, 2382, 3217
EcoRV	GATATC	1 cut(s)	1926
EcoT14I	CCWWGG	3 cut(s)	1687, 2848, 3170
EcoT38I	GRGCYC	1 cut(s)	1155
ErhI	CCWWGG	3 cut(s)	1687, 2848, 3170
Esp3I	CGTCTC	1 cut(s)	140
FaqI	GGGAC	2 cut(s)	363, 2320
FauI	CCCGC	3 cut(s)	125, 157, 449
FauNDI	CATATG	1 cut(s)	2911
Fnu4HI	GCNGC	7 cut(s)	162, 165, 408, 531, 894, 912, 1596
FriOI	GRGCYC	1 cut(s)	1155
Fsp4HI	GCNGC	7 cut(s)	162, 165, 408, 531, 894, 912, 1596
FspBI	CTAG	7 cut(s)	18, 219, 882, 1688, 1970, 2849, 3192
FspI	TGCGCA	1 cut(s)	2661
GlaI	GCGC	1 cut(s)	2661
GluI	GCNGC	7 cut(s)	162, 165, 408, 531, 894, 912, 1596
GsaI	CCCAGC	2 cut(s)	235, 2479
GsuI	CTGGAG	1 cut(s)	2983
HaeIII	GGCC	6 cut(s)	5, 189, 1058, 1585, 2013, 2103
HapII	CCGG	3 cut(s)	190, 498, 762
HgaI	GACGC	3 cut(s)	419, 1475, 2543
HhaI	GCGC	1 cut(s)	2662
Hin1I	GRCGYC	2 cut(s)	1486, 2535
Hin6I	GCGC	1 cut(s)	2660
HinP1I	GCGC	1 cut(s)	2660
HincII	GTYRAC	5 cut(s)	271, 829, 984, 2533, 3201
HindII	GTYRAC	5 cut(s)	271, 829, 984, 2533, 3201
HindIII	AAGCTT	3 cut(s)	419, 1416, 2570
HpaII	CCGG	3 cut(s)	190, 498, 762
HphI	GGTGA	8 cut(s)	2192, 2218, 2321, 2468, 2693, 2963, 3016, 3152
Hpy166II	GTNNAC	8 cut(s)	271, 829, 984, 2062, 2533, 2980, 3201, 3239
Hpy8I	GTNNAC	8 cut(s)	271, 829, 984, 2062, 2533, 2980, 3201, 3239
Hpy99I	CGWCG	2 cut(s)	135, 215
HpyCH4III	ACNGT	6 cut(s)	577, 770, 1992, 2066, 3123, 3243
HpyCH4IV	ACGT	4 cut(s)	213, 512, 2295, 2770
HpySE526I	ACGT	4 cut(s)	213, 512, 2295, 2770
Hsp92I	GRCGYC	2 cut(s)	1486, 2535
HspAI	GCGC	1 cut(s)	2660
KpnI	GGTACC	1 cut(s)	2818
Kzo9I	GATC	8 cut(s)	686, 788, 1048, 1537, 2182, 2189, 2968, 3210
LguI	GCTCTTC	1 cut(s)	1886
LmnI	GCTCC	2 cut(s)	1765, 2334
Lsp1109I	GCAGC	5 cut(s)	394, 542, 880, 898, 1582
LweI	GCATC	4 cut(s)	592, 880, 2302, 2554
MaeI	CTAG	7 cut(s)	18, 219, 882, 1688, 1970, 2849, 3192
MaeII	ACGT	4 cut(s)	213, 512, 2295, 2770
MaeIII	GTNAC	4 cut(s)	214, 571, 701, 2664
MalI	GATC	8 cut(s)	688, 790, 1050, 1539, 2184, 2191, 2970, 3212
MboI	GATC	8 cut(s)	686, 788, 1048, 1537, 2182, 2189, 2968, 3210
MfeI	CAATTG	2 cut(s)	2301, 3247
MflI	RGATCY	1 cut(s)	686
MhlI	GDGCHC	3 cut(s)	1155, 3027, 3241
MlyI	GAGTC	6 cut(s)	824, 1173, 1940, 1954, 2141, 2885
MmeI	TCCRAC	2 cut(s)	114, 714
MroXI	GAANNNNTTC	4 cut(s)	1337, 1349, 1449, 2732
MseI	TTAA	9 cut(s)	540, 963, 1226, 1859, 2238, 2346, 2450, 2523, 2682
MslI	CAYNNNNRTG	4 cut(s)	438, 951, 2427, 3077
MspA1I	CMGCKG	3 cut(s)	231, 674, 3002
MspI	CCGG	3 cut(s)	190, 498, 762
MspR9I	CCNGG	4 cut(s)	1054, 2187, 2384, 3219
MunI	CAATTG	2 cut(s)	2301, 3247
Mva1269I	GAATGC	2 cut(s)	1078, 2734
MvaI	CCWGG	4 cut(s)	1054, 2187, 2384, 3219
NcoI	CCATGG	1 cut(s)	3170
NdeI	CATATG	1 cut(s)	2911
NdeII	GATC	8 cut(s)	686, 788, 1048, 1537, 2182, 2189, 2968, 3210
NlaIV	GGNNCC	6 cut(s)	478, 1504, 2102, 2816, 3168, 3228
NmeAIII	GCCGAG	2 cut(s)	165, 355
NmuCI	GTSAC	4 cut(s)	214, 571, 701, 2664
NsbI	TGCGCA	1 cut(s)	2661
NspI	RCATGY	4 cut(s)	1640, 2426, 2483, 2497
PagI	TCATGA	1 cut(s)	469
PasI	CCCWGGG	1 cut(s)	1053
PciSI	GCTCTTC	1 cut(s)	1886
PctI	GAATGC	2 cut(s)	1078, 2734
PdmI	GAANNNNTTC	4 cut(s)	1337, 1349, 1449, 2732
PfeI	GAWTC	7 cut(s)	1231, 1241, 1696, 2615, 2639, 2651, 3031
PfoI	TCCNGGA	1 cut(s)	2185
PkrI	GCNGC	7 cut(s)	163, 166, 409, 532, 895, 913, 1597
PleI	GAGTC	6 cut(s)	824, 1172, 1939, 1953, 2140, 2885
PpsI	GAGTC	6 cut(s)	824, 1172, 1939, 1953, 2140, 2885
PshBI	ATTAAT	1 cut(s)	2346
Psp124BI	GAGCTC	1 cut(s)	1155
Psp1406I	AACGTT	2 cut(s)	512, 2770
Psp6I	CCWGG	4 cut(s)	1052, 2185, 2382, 3217
PspFI	CCCAGC	2 cut(s)	231, 2475
PspGI	CCWGG	4 cut(s)	1052, 2185, 2382, 3217
PspN4I	GGNNCC	6 cut(s)	478, 1504, 2102, 2816, 3168, 3228
PspPI	GGNCC	7 cut(s)	477, 1056, 1584, 1823, 2012, 2101, 3226
PstNI	CAGNNNCTG	2 cut(s)	1934, 2332
PsuI	RGATCY	1 cut(s)	686
PvuII	CAGCTG	2 cut(s)	231, 674
RsaI	GTAC	6 cut(s)	2061, 2298, 2360, 2492, 2816, 2846
RsaNI	GTAC	6 cut(s)	2060, 2297, 2359, 2491, 2815, 2845
RseI	CAYNNNNRTG	4 cut(s)	438, 951, 2427, 3077
SacI	GAGCTC	1 cut(s)	1155
SapI	GCTCTTC	1 cut(s)	1886
SaqAI	TTAA	9 cut(s)	540, 963, 1226, 1859, 2238, 2346, 2450, 2523, 2682
SatI	GCNGC	7 cut(s)	162, 165, 408, 531, 894, 912, 1596
Sau3AI	GATC	8 cut(s)	686, 788, 1048, 1537, 2182, 2189, 2968, 3210
Sau96I	GGNCC	7 cut(s)	477, 1056, 1584, 1823, 2012, 2101, 3226
ScaI	AGTACT	1 cut(s)	2360
SchI	GAGTC	6 cut(s)	824, 1173, 1940, 1954, 2141, 2885
ScrFI	CCNGG	4 cut(s)	1054, 2187, 2384, 3219
SduI	GDGCHC	3 cut(s)	1155, 3027, 3241
SfaNI	GCATC	4 cut(s)	592, 880, 2302, 2554
SfcI	CTRYAG	2 cut(s)	290, 694
SinI	GGWCC	3 cut(s)	477, 1823, 3226
SmiMI	CAYNNNNRTG	4 cut(s)	438, 951, 2427, 3077
SmlI	CTYRAG	2 cut(s)	173, 2540
SmoI	CTYRAG	2 cut(s)	173, 2540
SpeI	ACTAGT	1 cut(s)	17
SspMI	CTAG	7 cut(s)	18, 219, 882, 1688, 1970, 2849, 3192
SstI	GAGCTC	1 cut(s)	1155
StyD4I	CCNGG	4 cut(s)	1052, 2185, 2382, 3217
StyI	CCWWGG	3 cut(s)	1687, 2848, 3170
TaaI	ACNGT	6 cut(s)	577, 770, 1992, 2066, 3123, 3243
TaiI	ACGT	4 cut(s)	216, 515, 2298, 2773
TaqI	TCGA	4 cut(s)	241, 1167, 2197, 3064
TaqII	GACCGA	1 cut(s)	1811
TatI	WGTACW	2 cut(s)	2358, 2490
TauI	GCSGC	2 cut(s)	164, 167
TfiI	GAWTC	7 cut(s)	1231, 1241, 1696, 2615, 2639, 2651, 3031
Tru1I	TTAA	9 cut(s)	540, 963, 1226, 1859, 2238, 2346, 2450, 2523, 2682
Tru9I	TTAA	9 cut(s)	540, 963, 1226, 1859, 2238, 2346, 2450, 2523, 2682
TseFI	GTSAC	4 cut(s)	214, 571, 701, 2664
TseI	GCWGC	5 cut(s)	407, 530, 893, 911, 1595
Tsp45I	GTSAC	4 cut(s)	214, 571, 701, 2664
TspGWI	ACGGA	1 cut(s)	430
VneI	GTGCAC	1 cut(s)	3237
VpaK11BI	GGWCC	3 cut(s)	477, 1823, 3226
VspI	ATTAAT	1 cut(s)	2346
XapI	RAATTY	5 cut(s)	262, 942, 1381, 1519, 3113
XceI	RCATGY	4 cut(s)	1640, 2426, 2483, 2497
XmaJI	CCTAGG	2 cut(s)	1687, 2848
XmnI	GAANNNNTTC	4 cut(s)	1337, 1349, 1449, 2732
XspI	CTAG	7 cut(s)	18, 219, 882, 1688, 1970, 2849, 3192
ZrmI	AGTACT	1 cut(s)	2360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.