Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013983

Physical Location & Seq

Genomic Coordinates Reverse (-)

40965875 .. 40966554

Gene Structure 680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0263700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGTGAAGATGGGAAACAAGTTGGTTGTGATTTTGGTCGTGGCAATGCTGGTATTTTTCGAAGGGTCAACAGCTTTTACCTTCTGCAAGATGAATGACGATGGTCTAACTGCTTGCAAGCCATCGGTGACAAAGCCGAACCCTGTTGATCCATCCCCAAAGTGTTGCAAGGCTCTTTCCGGAGCTGATTTGGGGTGTCTTTGCTCTTACAAGGCCTCACCGGTGTTGCCTACTCTCGGAATTGCTCCTGATCTTGCCATGGGACTACCAGCTAAGTGCGGCATCGCCCCTCCTGCCAATTGCGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0006996 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0009657 GO:0009658 GO:0009987 GO:0010109 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019222 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0031323 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW WD40 zf-RING_UBOX

Protein Analysis

102

Amino Acids

10.45

Weight (kDa)

8.45

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	12 - 99	6.1e-12	Probable lipid transfer
Tryp_alpha_amyl	PF00234	29 - 101	9.8e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21650 AT1G21650 AT1G21650
fragaria_vesca	FvH4_2g27750
malus_domestica	MD00G1100600.v1.1
prunus_persica	Prupe.1G490400_v2.0.a1
pyrus_communis	pycom15g30570
rosa_chinensis	RchiOBHm_Chr6g0296621
rosa_laevigata	RLG00000011676
rosa_multiflora	Rmu_sc0001741.1_g000019
rosa_roxburghii	Rroxscaffold_7G00171330 Rroxscaffold_7G00178770
rosa_rugosa	Rorug06G0263700
rosa_samantha	Rh6AG375100 Rh6CG388700
rosa_wichuraiana	Rw6G032720 Rw6G032810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	179
AciI	CCGC	1 cut(s)	279
AclWI	GGATC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgeI	ACCGGT	1 cut(s)	220
AluBI	AGCT	3 cut(s)	74, 185, 272
AluI	AGCT	3 cut(s)	74, 185, 272
AlwI	GGATC	1 cut(s)	143
Aor13HI	TCCGGA	1 cut(s)	179
AoxI	GGCC	1 cut(s)	213
AsiGI	ACCGGT	1 cut(s)	220
AspLEI	GCGC	1 cut(s)	305
AsuHPI	GGTGA	3 cut(s)	16, 139, 210
AsuII	TTCGAA	1 cut(s)	60
BccI	CCATC	4 cut(s)	4, 95, 130, 160
BisI	GCNGC	1 cut(s)	280
BlsI	GCNGC	1 cut(s)	281
BmsI	GCATC	1 cut(s)	291
BoxI	GACNNNNGTC	1 cut(s)	102
Bpu14I	TTCGAA	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	258
BsaWI	WCCGGW	2 cut(s)	179, 220
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse118I	RCCGGY	1 cut(s)	220
Bse3DI	GCAATG	1 cut(s)	51
BseAI	TCCGGA	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	152
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMI	GCAATG	1 cut(s)	51
BshFI	GGCC	1 cut(s)	215
BshTI	ACCGGT	1 cut(s)	220
BsiSI	CCGG	2 cut(s)	180, 221
BslFI	GGGAC	1 cut(s)	276
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	276
BsnI	GGCC	1 cut(s)	215
Bsp119I	TTCGAA	1 cut(s)	60
Bsp13I	TCCGGA	1 cut(s)	179
Bsp143I	GATC	2 cut(s)	148, 250
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	1 cut(s)	279
BspANI	GGCC	1 cut(s)	215
BspEI	TCCGGA	1 cut(s)	179
BspPI	GGATC	1 cut(s)	143
BspT104I	TTCGAA	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	51
BsrFI	RCCGGY	1 cut(s)	220
BssAI	RCCGGY	1 cut(s)	220
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	2 cut(s)	148, 250
BssT1I	CCWWGG	1 cut(s)	258
BstBI	TTCGAA	1 cut(s)	60
BstC8I	GCNNGC	2 cut(s)	115, 119
BstDEI	CTNAG	1 cut(s)	273
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	2 cut(s)	151, 253
BstMBI	GATC	2 cut(s)	148, 250
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 302
BstPAI	GACNNNNGTC	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	215
BtgI	CCRYGG	1 cut(s)	258
BtgZI	GCGATG	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	152
Cac8I	GCNNGC	2 cut(s)	115, 119
CfoI	GCGC	1 cut(s)	305
Cfr10I	RCCGGY	1 cut(s)	220
CspAI	ACCGGT	1 cut(s)	220
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	7 cut(s)	74, 121, 136, 173, 185, 215, 272
CviKI_1	RGCY	7 cut(s)	74, 121, 136, 173, 185, 215, 272
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	2 cut(s)	150, 252
DpnII	GATC	2 cut(s)	148, 250
Eco130I	CCWWGG	1 cut(s)	258
Eco147I	AGGCCT	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	1 cut(s)	262
FaiI	YATR	1 cut(s)	260
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	1 cut(s)	258
Fnu4HI	GCNGC	1 cut(s)	280
FokI	GGATG	1 cut(s)	139
Fsp4HI	GCNGC	1 cut(s)	280
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	1 cut(s)	280
HaeIII	GGCC	1 cut(s)	215
HapII	CCGG	2 cut(s)	180, 221
HhaI	GCGC	1 cut(s)	305
Hin1II	CATG	1 cut(s)	262
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HincII	GTYRAC	1 cut(s)	69
HindII	GTYRAC	1 cut(s)	69
HpaII	CCGG	2 cut(s)	180, 221
HphI	GGTGA	3 cut(s)	16, 139, 210
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	1 cut(s)	239
Hpy188III	TCNNGA	2 cut(s)	180, 248
Hpy8I	GTNNAC	1 cut(s)	69
HpyAV	CCTTC	2 cut(s)	56, 91
HpyCH4V	TGCA	3 cut(s)	87, 117, 168
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 302
HpyF3I	CTNAG	1 cut(s)	273
Hsp92II	CATG	1 cut(s)	262
HspAI	GCGC	1 cut(s)	303
Kpn2I	TCCGGA	1 cut(s)	179
Kzo9I	GATC	2 cut(s)	148, 250
LmnI	GCTCC	2 cut(s)	182, 250
LpnPI	CCDG	6 cut(s)	35, 156, 193, 234, 261, 282
LweI	GCATC	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	2 cut(s)	150, 252
MboI	GATC	2 cut(s)	148, 250
MboII	GAAGA	1 cut(s)	19
MfeI	CAATTG	1 cut(s)	298
MluCI	AATT	2 cut(s)	240, 298
MnlI	CCTC	2 cut(s)	226, 300
MroI	TCCGGA	1 cut(s)	179
MspI	CCGG	2 cut(s)	180, 221
MunI	CAATTG	1 cut(s)	298
MwoI	GCNNNNNNNGC	2 cut(s)	293, 302
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	2 cut(s)	148, 250
NlaIII	CATG	1 cut(s)	262
NmuCI	GTSAC	1 cut(s)	127
NspV	TTCGAA	1 cut(s)	60
PceI	AGGCCT	1 cut(s)	215
PinAI	ACCGGT	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	281
PshAI	GACNNNNGTC	1 cut(s)	102
SatI	GCNGC	1 cut(s)	280
Sau3AI	GATC	2 cut(s)	148, 250
SetI	ASST	4 cut(s)	76, 83, 187, 274
SfaNI	GCATC	1 cut(s)	291
SfuI	TTCGAA	1 cut(s)	60
SgrAI	CRCCGGYG	1 cut(s)	220
Sse9I	AATT	2 cut(s)	240, 298
SseBI	AGGCCT	1 cut(s)	215
SsiI	CCGC	1 cut(s)	279
StuI	AGGCCT	1 cut(s)	215
StyI	CCWWGG	1 cut(s)	258
TaqI	TCGA	1 cut(s)	60
TasI	AATT	2 cut(s)	240, 298
TauI	GCSGC	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.