Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009921

Physical Location & Seq

Genomic Coordinates Reverse (-)

41931453 .. 41937699

Gene Structure 6247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G508500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGATGAACAGAAAATCAAGTAATTGTGCTATTTGTGAGAGTTCAAATCTCGCTTCTGTCTGTGCTATCTGTGTCAATTACAGATTAACTGAGTATAACAGTTCTTTAAAGGCACTGAAGAGTCGTCGTGATTCCTTGTATTCAAGATTGACTGAGGCGCTTGTGGCAAAGGGTAAGGCCGATGATCAACTAAATTGGAGAGTGCTTCAAAATGAAAAGCTTGTGAGGTTAAGGGAAAAGCTCCGCTGTAATAAAGAACAGCTTGTGCAAGGCAAGGCTAAGATTGAGAAGACGTCCTATGACCTAAAAGTAAAATCTGGGGTACTTGAATCAGCCCTTGCTGTGTTGGAAAAAAATCGTGCAGAACAACTGGAGAAGTTCTATCCCAACTTTATATGCACTCAGAACTTAGGGCATATGGCAATTACCTCTGAACGCCTTCATAAACAGTCAGTGGTTATAAAACAAATATGCAAATTGTTTCCCCAACGTCGGGTGACTGTTGATGCAAAGAGGAAAGATGCATCTGGTGGTCAATATGATCAAATTTGCAATGCATGCTTGCCAAGAGGGCTGGATCCACACTCAGTTCCATCAGAAGAGCTTGCTGCTTCTTTGGGATACATGGTTCAACTCCTGAATCTTGTCGTTCAGAACTTAGCTGCTCCAGCACTTCATAACTCAGGTTTCGCAGGTTCCTGCTCTCGGATATGGCAAAGAGATTCTTATTGGGATGCGCGCCCTTCTTCTAGGAGCAATGAATATCCTCTCTTTATACCACGGCAAAATTATTGCTCCACTAGTGGTGAAAATTCGTGGTCTGATAGAAGCTCAAGTAATTTTGGTGTTGCTTCAATAGATTCCGAGAGGAAACCCCATCTGGATTCTTCTGGAAGTAGTAGCTTTAATTATACTTCTGCTTCTCAACACTCTGTCGAAACACACAAAGATTTGCAGAGAGGGATTTCACTCCTCAAGAAAAGTGTGGCATGCATTACAGCATACTGTTATAACTCACTTTGTTTAGATGTCCCTTCTGAGGCATCTACCTTTGAAGCATTTGCAAAATTGTTGGCTACATTATCTTCGTCCAAGGAAGTTCATTCTGTTTTCTCTTTGAAAATGGCTTGTTCAAGGTCATGTAAGCAAGTTCAACAATTGAACAAATCTGTTTGGAATGTGAATTCTGCCATATCGTCAACCACTCTACTGGATAGCGCACATGCCATGACAATGACGAAAAATTTGTATGAATATAACCTACCTACTTATGCCACCAGCTCTCTTTGTTCCACTGAGTTGTCTGATTCTGGGAAGAATGAATCCCTTGTAGAAGGATGGGATCTTGTAGAACATCCAACTTTTCCTCCTCCACCATCACAATCTGAGGATATTGAGCATTGGACTCGAGCCATGTTCATCGATGCTAAAAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Atg14

Protein Analysis

480

Amino Acids

53.47

Weight (kDa)

8.83

Isoelectric Point (pI)

53.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08540
fragaria_vesca	FvH4_5g38340 FvH4_5g38340 FvH4_5g38340
malus_domestica	MD08G1174500.v1.1 MD15G1361100.v1.1
prunus_persica	Prupe.1G508500_v2.0.a1 Prupe.1G508500_v2.0.a1 Prupe.1G508500_v2.0.a1 Prupe.1G508500_v2.0.a1
pyrus_communis	pycom15g32260
rosa_chinensis	RchiOBHm_Chr7g0240361
rosa_laevigata	RLG00000000683
rosa_multiflora	Rmu_sc0002676.1_g000011
rosa_roxburghii	Rroxscaffold_3G00220190
rosa_rugosa	Rorug07G0335000
rosa_samantha	Rh7AG489400 Rh7BG462400 Rh7CG505700 Rh7DG473400
rosa_wichuraiana	Rw7G040950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	461, 1011
AatII	GACGTC	1 cut(s)	296
Acc36I	ACCTGC	1 cut(s)	683
AccII	CGCG	1 cut(s)	739
AciI	CCGC	1 cut(s)	244
AclWI	GGATC	3 cut(s)	572, 585, 1350
AcsI	RAATTY	4 cut(s)	546, 811, 1183, 1243
AcuI	CTGAAG	1 cut(s)	137
AcyI	GRCGYC	1 cut(s)	293
AfaI	GTAC	1 cut(s)	324
AfiI	CCNNNNNNNGG	4 cut(s)	492, 493, 705, 1039
AhlI	ACTAGT	1 cut(s)	800
AloI	GAACNNNNNNTCC	2 cut(s)	612, 644
AluBI	AGCT	8 cut(s)	220, 241, 262, 604, 662, 831, 903, 1281
AluI	AGCT	8 cut(s)	220, 241, 262, 604, 662, 831, 903, 1281
AlwI	GGATC	3 cut(s)	572, 585, 1350
Ama87I	CYCGRG	1 cut(s)	1407
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	2 cut(s)	608, 662
ApoI	RAATTY	4 cut(s)	546, 811, 1183, 1243
ArsI	GACNNNNNNTTYG	2 cut(s)	1228, 1260
Asp700I	GAANNNNTTC	1 cut(s)	438
AspLEI	GCGC	4 cut(s)	160, 739, 741, 1220
AsuHPI	GGTGA	2 cut(s)	508, 818
AvaI	CYCGRG	1 cut(s)	1407
BamHI	GGATCC	1 cut(s)	577
BbsI	GAAGAC	1 cut(s)	296
BbvI	GCAGC	2 cut(s)	595, 649
BccI	CCATC	4 cut(s)	601, 885, 1332, 1384
BceAI	ACGGC	1 cut(s)	797
BcgI	CGANNNNNNTGC	2 cut(s)	1388, 1422
BciVI	GTATCC	1 cut(s)	614
BclI	TGATCA	2 cut(s)	184, 541
BcuI	ACTAGT	1 cut(s)	800
BfaI	CTAG	2 cut(s)	750, 801
BfoI	RGCGCY	1 cut(s)	161
BfuAI	ACCTGC	1 cut(s)	683
BfuI	GTATCC	1 cut(s)	614
BglI	GCCNNNNNGGC	1 cut(s)	571
BisI	GCNGC	2 cut(s)	609, 663
BlsI	GCNGC	2 cut(s)	610, 664
BmeT110I	CYCGRG	1 cut(s)	1407
BmiI	GGNNCC	2 cut(s)	579, 697
BmsI	GCATC	6 cut(s)	496, 511, 533, 724, 1052, 1414
BpiI	GAAGAC	1 cut(s)	296
BpmI	CTGGAG	2 cut(s)	392, 651
BpuEI	CTTGAG	2 cut(s)	817, 959
Bsa29I	ATCGAT	1 cut(s)	1422
BsaHI	GRCGYC	1 cut(s)	293
BsaJI	CCNNGG	2 cut(s)	779, 1092
BsaXI	ACNNNNNCTCC	2 cut(s)	1351, 1381
Bsc4I	CCNNNNNNNGG	4 cut(s)	492, 493, 705, 1039
Bse1I	ACTGG	2 cut(s)	375, 1215
Bse3DI	GCAATG	2 cut(s)	559, 763
BseCI	ATCGAT	1 cut(s)	1422
BseDI	CCNNGG	2 cut(s)	779, 1092
BseGI	GGATG	3 cut(s)	739, 1343, 1354
BseLI	CCNNNNNNNGG	4 cut(s)	492, 493, 705, 1039
BseMI	GCAATG	2 cut(s)	559, 763
BseMII	CTCAG	8 cut(s)	81, 144, 416, 600, 696, 1029, 1287, 1377
BseNI	ACTGG	2 cut(s)	375, 1215
BsePI	GCGCGC	1 cut(s)	737
BseRI	GAGGAG	2 cut(s)	962, 1359
BseXI	GCAGC	2 cut(s)	595, 649
BsgI	GTGCAG	1 cut(s)	381
Bsh1236I	CGCG	1 cut(s)	739
BshFI	GGCC	1 cut(s)	179
BshVI	ATCGAT	1 cut(s)	1422
BsiHKCI	CYCGRG	1 cut(s)	1407
BslFI	GGGAC	1 cut(s)	1016
BslI	CCNNNNNNNGG	4 cut(s)	492, 493, 705, 1039
BsmFI	GGGAC	1 cut(s)	1016
BsnI	GGCC	1 cut(s)	179
BsoBI	CYCGRG	1 cut(s)	1407
Bsp143I	GATC	4 cut(s)	184, 541, 577, 1342
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	8 cut(s)	82, 145, 415, 599, 695, 1030, 1288, 1378
BspDI	ATCGAT	1 cut(s)	1422
BspFNI	CGCG	1 cut(s)	739
BspLI	GGNNCC	2 cut(s)	579, 697
BspMI	ACCTGC	1 cut(s)	683
BspPI	GGATC	3 cut(s)	572, 585, 1350
BspQI	GCTCTTC	1 cut(s)	594
BsrDI	GCAATG	2 cut(s)	559, 763
BsrI	ACTGG	2 cut(s)	375, 1215
BssECI	CCNNGG	2 cut(s)	779, 1092
BssHII	GCGCGC	1 cut(s)	737
BssMI	GATC	4 cut(s)	184, 541, 577, 1342
BssNI	GRCGYC	1 cut(s)	293
BssT1I	CCWWGG	1 cut(s)	1092
Bst4CI	ACNGT	4 cut(s)	101, 450, 502, 1007
Bst6I	CTCTTC	2 cut(s)	113, 594
BstACI	GRCGYC	1 cut(s)	293
BstAPI	GCANNNNNTGC	1 cut(s)	558
BstC8I	GCNNGC	5 cut(s)	559, 563, 606, 739, 991
BstDSI	CCRYGG	1 cut(s)	779
BstF5I	GGATG	3 cut(s)	739, 1343, 1354
BstFNI	CGCG	1 cut(s)	739
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	4 cut(s)	160, 739, 741, 1220
BstKTI	GATC	4 cut(s)	187, 544, 580, 1345
BstMBI	GATC	4 cut(s)	184, 541, 577, 1342
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 558, 571, 668
BstNSI	RCATGY	3 cut(s)	561, 993, 1226
BstUI	CGCG	1 cut(s)	739
BstV1I	GCAGC	2 cut(s)	595, 649
BstV2I	GAAGAC	1 cut(s)	296
BstX2I	RGATCY	2 cut(s)	577, 1342
BstXI	CCANNNNNNTGG	1 cut(s)	1210
BstYI	RGATCY	2 cut(s)	577, 1342
Bsu15I	ATCGAT	1 cut(s)	1422
BsuI	GTATCC	1 cut(s)	614
BsuRI	GGCC	1 cut(s)	179
BsuTUI	ATCGAT	1 cut(s)	1422
BtgI	CCRYGG	1 cut(s)	779
BtsCI	GGATG	3 cut(s)	739, 1343, 1354
BtsIMutI	CAGTG	3 cut(s)	113, 459, 1293
BveI	ACCTGC	1 cut(s)	683
Cac8I	GCNNGC	5 cut(s)	559, 563, 606, 739, 991
CfoI	GCGC	4 cut(s)	160, 739, 741, 1220
ClaI	ATCGAT	1 cut(s)	1422
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	7 cut(s)	558, 625, 990, 1140, 1223, 1228, 1414
CviQI	GTAC	1 cut(s)	323
DpnI	GATC	4 cut(s)	186, 543, 579, 1344
DpnII	GATC	4 cut(s)	184, 541, 577, 1342
DraI	TTTAAA	1 cut(s)	108
Eam1104I	CTCTTC	2 cut(s)	113, 594
EarI	CTCTTC	2 cut(s)	113, 594
Eco130I	CCWWGG	1 cut(s)	1092
Eco57I	CTGAAG	1 cut(s)	137
Eco88I	CYCGRG	1 cut(s)	1407
EcoRI	GAATTC	1 cut(s)	1183
EcoT14I	CCWWGG	1 cut(s)	1092
EcoT22I	ATGCAT	3 cut(s)	526, 559, 995
ErhI	CCWWGG	1 cut(s)	1092
FaeI	CATG	7 cut(s)	561, 628, 993, 1143, 1226, 1231, 1417
FalI	AAGNNNNNCTT	4 cut(s)	246, 278, 709, 741
FaqI	GGGAC	1 cut(s)	1016
FatI	CATG	7 cut(s)	557, 624, 989, 1139, 1222, 1227, 1413
FauNDI	CATATG	1 cut(s)	417
FbaI	TGATCA	2 cut(s)	184, 541
Fnu4HI	GCNGC	2 cut(s)	609, 663
FokI	GGATG	3 cut(s)	746, 1341, 1350
Fsp4HI	GCNGC	2 cut(s)	609, 663
FspBI	CTAG	2 cut(s)	750, 801
GlaI	GCGC	4 cut(s)	159, 738, 740, 1219
GluI	GCNGC	2 cut(s)	609, 663
GsuI	CTGGAG	2 cut(s)	392, 651
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	179
HhaI	GCGC	4 cut(s)	160, 739, 741, 1220
Hin1I	GRCGYC	1 cut(s)	293
Hin1II	CATG	7 cut(s)	561, 628, 993, 1143, 1226, 1231, 1417
Hin6I	GCGC	4 cut(s)	158, 737, 739, 1218
HinP1I	GCGC	4 cut(s)	158, 737, 739, 1218
HincII	GTYRAC	1 cut(s)	1200
HindII	GTYRAC	1 cut(s)	1200
HindIII	AAGCTT	1 cut(s)	218
HphI	GGTGA	2 cut(s)	508, 818
Hpy166II	GTNNAC	1 cut(s)	1200
Hpy188III	TCNNGA	6 cut(s)	128, 144, 637, 881, 891, 976
Hpy8I	GTNNAC	1 cut(s)	1200
Hpy99I	CGWCG	2 cut(s)	129, 495
HpyAV	CCTTC	4 cut(s)	449, 753, 1044, 1328
HpyCH4III	ACNGT	4 cut(s)	101, 450, 502, 1007
HpyCH4IV	ACGT	2 cut(s)	293, 490
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 558, 571, 668
HpySE526I	ACGT	2 cut(s)	293, 490
Hsp92I	GRCGYC	1 cut(s)	293
Hsp92II	CATG	7 cut(s)	561, 628, 993, 1143, 1226, 1231, 1417
HspAI	GCGC	4 cut(s)	158, 737, 739, 1218
Ksp22I	TGATCA	2 cut(s)	184, 541
Kzo9I	GATC	4 cut(s)	184, 541, 577, 1342
LguI	GCTCTTC	1 cut(s)	594
LmnI	GCTCC	4 cut(s)	246, 670, 753, 800
Lsp1109I	GCAGC	2 cut(s)	595, 649
LweI	GCATC	6 cut(s)	496, 511, 533, 724, 1052, 1414
MaeI	CTAG	2 cut(s)	750, 801
MaeII	ACGT	2 cut(s)	293, 490
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	4 cut(s)	186, 543, 579, 1344
MboI	GATC	4 cut(s)	184, 541, 577, 1342
MboII	GAAGA	7 cut(s)	130, 301, 611, 738, 879, 1077, 1327
MfeI	CAATTG	1 cut(s)	1157
MflI	RGATCY	2 cut(s)	577, 1342
MlyI	GAGTC	2 cut(s)	130, 1399
MmeI	TCCRAC	2 cut(s)	327, 1382
Mph1103I	ATGCAT	3 cut(s)	526, 559, 995
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	4 cut(s)	86, 107, 230, 906
MslI	CAYNNNNRTG	1 cut(s)	1232
MspA1I	CMGCKG	1 cut(s)	246
MunI	CAATTG	1 cut(s)	1157
MvnI	CGCG	1 cut(s)	739
MwoI	GCNNNNNNNGC	4 cut(s)	164, 558, 571, 668
NdeI	CATATG	1 cut(s)	417
NdeII	GATC	4 cut(s)	184, 541, 577, 1342
NlaIII	CATG	7 cut(s)	561, 628, 993, 1143, 1226, 1231, 1417
NlaIV	GGNNCC	2 cut(s)	579, 697
NmuCI	GTSAC	1 cut(s)	496
NsiI	ATGCAT	3 cut(s)	526, 559, 995
NspI	RCATGY	3 cut(s)	561, 993, 1226
PaeI	GCATGC	2 cut(s)	561, 993
PaeR7I	CTCGAG	1 cut(s)	1407
PauI	GCGCGC	1 cut(s)	737
PciSI	GCTCTTC	1 cut(s)	594
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	8 cut(s)	131, 329, 640, 722, 860, 884, 1307, 1322
PkrI	GCNGC	2 cut(s)	610, 664
PleI	GAGTC	2 cut(s)	129, 1399
PpsI	GAGTC	2 cut(s)	129, 1399
PsiI	TTATAA	2 cut(s)	461, 1011
PspN4I	GGNNCC	2 cut(s)	579, 697
PspXI	VCTCGAGB	1 cut(s)	1407
PsuI	RGATCY	2 cut(s)	577, 1342
PteI	GCGCGC	1 cut(s)	737
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
RseI	CAYNNNNRTG	1 cut(s)	1232
SapI	GCTCTTC	1 cut(s)	594
SaqAI	TTAA	4 cut(s)	86, 107, 230, 906
SatI	GCNGC	2 cut(s)	609, 663
Sau3AI	GATC	4 cut(s)	184, 541, 577, 1342
SchI	GAGTC	2 cut(s)	130, 1399
SfaNI	GCATC	6 cut(s)	496, 511, 533, 724, 1052, 1414
Sfr274I	CTCGAG	1 cut(s)	1407
SlaI	CTCGAG	1 cut(s)	1407
SmiMI	CAYNNNNRTG	1 cut(s)	1232
SmlI	CTYRAG	3 cut(s)	832, 974, 1407
SmoI	CTYRAG	3 cut(s)	832, 974, 1407
SpeI	ACTAGT	1 cut(s)	800
SphI	GCATGC	2 cut(s)	561, 993
SsiI	CCGC	1 cut(s)	244
SspMI	CTAG	2 cut(s)	750, 801
StyI	CCWWGG	1 cut(s)	1092
TaaI	ACNGT	4 cut(s)	101, 450, 502, 1007
TaiI	ACGT	2 cut(s)	296, 493
TaqI	TCGA	3 cut(s)	936, 1408, 1422
TfiI	GAWTC	8 cut(s)	131, 329, 640, 722, 860, 884, 1307, 1322
Tru1I	TTAA	4 cut(s)	86, 107, 230, 906
Tru9I	TTAA	4 cut(s)	86, 107, 230, 906
TscAI	CASTG	3 cut(s)	120, 459, 1300
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	2 cut(s)	608, 662
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	9 cut(s)	20, 228, 431, 665, 774, 1091, 1266, 1335, 1408
TspRI	CASTG	3 cut(s)	120, 459, 1300
XapI	RAATTY	4 cut(s)	546, 811, 1183, 1243
XceI	RCATGY	3 cut(s)	561, 993, 1226
XhoI	CTCGAG	1 cut(s)	1407
XmnI	GAANNNNTTC	1 cut(s)	438
XspI	CTAG	2 cut(s)	750, 801
ZraI	GACGTC	1 cut(s)	294
Zsp2I	ATGCAT	3 cut(s)	526, 559, 995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.