Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002676.1

Orthogroup ID

OG0009921

Physical Location & Seq

Genomic Coordinates Reverse (-)

78915 .. 83704

Gene Structure 4790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002676.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

atgacgaacaagaaatccagtaattgtgcaatttgtgagaattcgaatctcgcatccatctgcgctgtctgtgtcaattacagattgaatgattacaacaattctttgaaggcactaaagagtcgtcgcgattccttgtattcgagattgagtgatgcgcttgtcgcaaagggtaaggcagatgatcaactaaattggagagtgcttcaaaatgagaagctcgtaaggttgagggaaaagctccggcgtaataaagaacaacttgtgcaagggaaggctaagattgagaagacatcctatgatctaaaagtcaagtatggggtgcttgaatcagccctctctatgctagaaaaaaatcgtgctgaacaactggagaagttctatcctaatctgatatgcactcagagcttagggcatatggcaattacatctgaacgtcttcataaacagtcggtggttataaaacaaatatgcaagttgtttccccaacgtcgggtgactgtagacgcaaagaggaaagacggttctggtggtcaatatgaccagatttgcaatgcatcgttgccaagagggctagatccacactcagttccctcagaagatcttgctgcttctttgggatatatggttcaactcttgaatcttgttgttcagaacttaggtgctccagcccttcataactcaggttttgcgggttcttgctctcgtatatggcaaagagactcttattgggatgcacgcccttcttctcggagcaatgaatatccgctatttattccacgtcaaaattattgctctactagtggtgaaaattcgtggtctgatagaagctcgagtaattttggtgttgcttcaatagaatcagagaggaaaccccgcctggattcttctggaagtagtagctttaattattcttctgcttctgcacattctgttgaaacccacaaagatttgcagagaggaatttcacttctcaagaaaagtgtggcatgcattacagcatactgttataactcactatgtttagatgtcccttctgaggcatctacctttgaagcattttcaaagttgctgtcgaccttatcttcttccaaggaagtccattcagttttttatttaaaaatggcttgttcaaggtcatgtaagcaagttcaacaattgaacaaatctgtatggaatgtgaactctgccatatcttcgaccactctactggatagtgcacatgcaatgacaatgacgaaaaacttctgtgaaaataatattcctaattatgccaccagcttcctttcttcgactgagatgtctgattctgggaagaatgaatgcatgattgaagggtgggatcttgtggaacatccgactcttcctccaccatcccaatctgaagatattgagcattggactcgagccatgattattgatgcaacaaagacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Atg14

Protein Analysis

478

Amino Acids

53.37

Weight (kDa)

8.86

Isoelectric Point (pI)

56.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08540
fragaria_vesca	FvH4_5g38340 FvH4_5g38340 FvH4_5g38340
malus_domestica	MD08G1174500.v1.1 MD15G1361100.v1.1
prunus_persica	Prupe.1G508500_v2.0.a1 Prupe.1G508500_v2.0.a1 Prupe.1G508500_v2.0.a1 Prupe.1G508500_v2.0.a1
pyrus_communis	pycom15g32260
rosa_chinensis	RchiOBHm_Chr7g0240361
rosa_laevigata	RLG00000000683
rosa_multiflora	Rmu_sc0002676.1_g000011
rosa_roxburghii	Rroxscaffold_3G00220190
rosa_rugosa	Rorug07G0335000
rosa_samantha	Rh7AG489400 Rh7BG462400 Rh7CG505700 Rh7DG473400
rosa_wichuraiana	Rw7G040950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	461, 1011
AasI	GACNNNNNNGTC	1 cut(s)	1300
AccI	GTMKAC	2 cut(s)	504, 1076
AccII	CGCG	1 cut(s)	129
AciI	CCGC	3 cut(s)	692, 767, 877
AclWI	GGATC	2 cut(s)	572, 1350
AcsI	RAATTY	3 cut(s)	40, 811, 963
AcuI	CTGAAG	1 cut(s)	1404
AfiI	CCNNNNNNNGG	3 cut(s)	492, 493, 1039
AhlI	ACTAGT	1 cut(s)	800
AjiI	CACGTC	1 cut(s)	782
AjnI	CCWGG	1 cut(s)	879
AloI	GAACNNNNNNTCC	5 cut(s)	31, 508, 540, 612, 644
AluBI	AGCT	6 cut(s)	220, 241, 408, 831, 903, 1281
AluI	AGCT	6 cut(s)	220, 241, 408, 831, 903, 1281
Alw21I	GWGCWC	2 cut(s)	667, 1222
Alw26I	GTCTC	1 cut(s)	714
Alw44I	GTGCAC	1 cut(s)	1218
AlwI	GGATC	2 cut(s)	572, 1350
Ama87I	CYCGRG	2 cut(s)	832, 1404
ApaLI	GTGCAC	1 cut(s)	1218
ApeKI	GCWGC	1 cut(s)	608
ApoI	RAATTY	3 cut(s)	40, 811, 963
ArsI	GACNNNNNNTTYG	2 cut(s)	1058, 1090
Asp700I	GAANNNNTTC	2 cut(s)	438, 1244
AspLEI	GCGC	2 cut(s)	65, 160
AsuHPI	GGTGA	2 cut(s)	508, 818
AsuII	TTCGAA	1 cut(s)	44
AvaI	CYCGRG	2 cut(s)	832, 1404
BaeGI	GKGCMC	1 cut(s)	1222
BbsI	GAAGAC	2 cut(s)	296, 431
Bbv12I	GWGCWC	2 cut(s)	667, 1222
BbvI	GCAGC	1 cut(s)	595
BccI	CCATC	2 cut(s)	65, 1381
BcgI	CGANNNNNNTGC	2 cut(s)	1385, 1419
BciT130I	CCWGG	1 cut(s)	881
BclI	TGATCA	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	714
BcuI	ACTAGT	1 cut(s)	800
BfaI	CTAG	3 cut(s)	347, 575, 801
BfmI	CTRYAG	1 cut(s)	501
BglI	GCCNNNNNGGC	1 cut(s)	571
BglII	AGATCT	1 cut(s)	601
BisI	GCNGC	1 cut(s)	609
BlsI	GCNGC	1 cut(s)	610
Bme1390I	CCNGG	1 cut(s)	881
BmeT110I	CYCGRG	2 cut(s)	832, 1404
BmgBI	CACGTC	1 cut(s)	782
BmrFI	CCNGG	1 cut(s)	881
BmsI	GCATC	6 cut(s)	62, 145, 566, 724, 1052, 1411
BpiI	GAAGAC	2 cut(s)	296, 431
BpmI	CTGGAG	2 cut(s)	392, 651
Bpu10I	CCTNAGC	1 cut(s)	409
Bpu14I	TTCGAA	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	959
BsaJI	CCNNGG	1 cut(s)	1092
BsaXI	ACNNNNNCTCC	2 cut(s)	1351, 1381
Bsc4I	CCNNNNNNNGG	3 cut(s)	492, 493, 1039
Bse1I	ACTGG	3 cut(s)	18, 375, 1215
Bse3DI	GCAATG	3 cut(s)	559, 763, 1233
BseBI	CCWGG	1 cut(s)	881
BseDI	CCNNGG	1 cut(s)	1092
BseGI	GGATG	5 cut(s)	53, 293, 739, 1354, 1373
BseLI	CCNNNNNNNGG	3 cut(s)	492, 493, 1039
BseMI	GCAATG	3 cut(s)	559, 763, 1233
BseMII	CTCAG	6 cut(s)	416, 600, 609, 696, 1029, 1287
BseNI	ACTGG	3 cut(s)	18, 375, 1215
BseSI	GKGCMC	1 cut(s)	1222
BseXI	GCAGC	1 cut(s)	595
BsgI	GTGCAG	1 cut(s)	909
Bsh1236I	CGCG	1 cut(s)	129
BsiHKAI	GWGCWC	2 cut(s)	667, 1222
BsiHKCI	CYCGRG	2 cut(s)	832, 1404
BsiSI	CCGG	1 cut(s)	244
BslFI	GGGAC	1 cut(s)	1016
BslI	CCNNNNNNNGG	3 cut(s)	492, 493, 1039
BsmAI	GTCTC	1 cut(s)	714
BsmFI	GGGAC	1 cut(s)	1016
BsmI	GAATGC	1 cut(s)	1328
BsoBI	CYCGRG	2 cut(s)	832, 1404
Bsp119I	TTCGAA	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	667, 1222
Bsp143I	GATC	5 cut(s)	184, 301, 577, 601, 1342
Bsp68I	TCGCGA	1 cut(s)	129
BspACI	CCGC	3 cut(s)	692, 767, 877
BspCNI	CTCAG	6 cut(s)	415, 599, 608, 695, 1030, 1288
BspFNI	CGCG	1 cut(s)	129
BspPI	GGATC	2 cut(s)	572, 1350
BspT104I	TTCGAA	1 cut(s)	44
BsrDI	GCAATG	3 cut(s)	559, 763, 1233
BsrI	ACTGG	3 cut(s)	18, 375, 1215
BssECI	CCNNGG	1 cut(s)	1092
BssMI	GATC	5 cut(s)	184, 301, 577, 601, 1342
BssT1I	CCWWGG	1 cut(s)	1092
Bst2UI	CCWGG	1 cut(s)	881
Bst4CI	ACNGT	4 cut(s)	450, 502, 524, 1007
Bst6I	CTCTTC	1 cut(s)	1368
BstBI	TTCGAA	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	739, 991
BstDEI	CTNAG	9 cut(s)	279, 402, 409, 586, 595, 658, 682, 1038, 1296
BstF5I	GGATG	5 cut(s)	53, 293, 739, 1354, 1373
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	2 cut(s)	65, 160
BstKTI	GATC	5 cut(s)	187, 304, 580, 604, 1345
BstMAI	GTCTC	1 cut(s)	714
BstMBI	GATC	5 cut(s)	184, 301, 577, 601, 1342
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 405, 571
BstNI	CCWGG	1 cut(s)	881
BstNSI	RCATGY	2 cut(s)	993, 1226
BstSCI	CCNGG	1 cut(s)	879
BstSFI	CTRYAG	1 cut(s)	501
BstSLI	GKGCMC	1 cut(s)	1222
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	595
BstV2I	GAAGAC	2 cut(s)	296, 431
BstX2I	RGATCY	3 cut(s)	577, 601, 1342
BstXI	CCANNNNNNTGG	1 cut(s)	1210
BstYI	RGATCY	3 cut(s)	577, 601, 1342
BtrI	CACGTC	1 cut(s)	782
BtsCI	GGATG	5 cut(s)	53, 293, 739, 1354, 1373
BtuMI	TCGCGA	1 cut(s)	129
Cac8I	GCNNGC	2 cut(s)	739, 991
CfoI	GCGC	2 cut(s)	65, 160
CseI	GACGC	1 cut(s)	515
CviAII	CATG	6 cut(s)	990, 1140, 1223, 1327, 1411, 1434
DdeI	CTNAG	9 cut(s)	279, 402, 409, 586, 595, 658, 682, 1038, 1296
DpnI	GATC	5 cut(s)	186, 303, 579, 603, 1344
DpnII	GATC	5 cut(s)	184, 301, 577, 601, 1342
DraI	TTTAAA	1 cut(s)	1119
DrdI	GACNNNNNNGTC	1 cut(s)	1300
DseDI	GACNNNNNNGTC	1 cut(s)	1300
Eam1104I	CTCTTC	1 cut(s)	1368
EarI	CTCTTC	1 cut(s)	1368
Eco130I	CCWWGG	1 cut(s)	1092
Eco57I	CTGAAG	1 cut(s)	1404
Eco88I	CYCGRG	2 cut(s)	832, 1404
EcoRI	GAATTC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	879
EcoT14I	CCWWGG	1 cut(s)	1092
EcoT22I	ATGCAT	3 cut(s)	559, 995, 1328
ErhI	CCWWGG	1 cut(s)	1092
FaeI	CATG	6 cut(s)	993, 1143, 1226, 1330, 1414, 1437
FalI	AAGNNNNNCTT	4 cut(s)	246, 278, 709, 741
FaqI	GGGAC	1 cut(s)	1016
FatI	CATG	6 cut(s)	989, 1139, 1222, 1326, 1410, 1433
FauI	CCCGC	2 cut(s)	685, 884
FauNDI	CATATG	1 cut(s)	417
FbaI	TGATCA	1 cut(s)	184
FblI	GTMKAC	2 cut(s)	504, 1076
Fnu4HI	GCNGC	1 cut(s)	609
FokI	GGATG	5 cut(s)	40, 280, 746, 1341, 1360
Fsp4HI	GCNGC	1 cut(s)	609
FspBI	CTAG	3 cut(s)	347, 575, 801
GlaI	GCGC	2 cut(s)	64, 159
GluI	GCNGC	1 cut(s)	609
GsuI	CTGGAG	2 cut(s)	392, 651
HapII	CCGG	1 cut(s)	244
HgaI	GACGC	1 cut(s)	515
HhaI	GCGC	2 cut(s)	65, 160
Hin1II	CATG	6 cut(s)	993, 1143, 1226, 1330, 1414, 1437
Hin6I	GCGC	2 cut(s)	63, 158
HinP1I	GCGC	2 cut(s)	63, 158
HincII	GTYRAC	1 cut(s)	1077
HindII	GTYRAC	1 cut(s)	1077
HpaII	CCGG	1 cut(s)	244
HphI	GGTGA	2 cut(s)	508, 818
Hpy166II	GTNNAC	4 cut(s)	505, 1077, 1183, 1220
Hpy188III	TCNNGA	5 cut(s)	128, 144, 637, 891, 976
Hpy8I	GTNNAC	4 cut(s)	505, 1077, 1183, 1220
Hpy99I	CGWCG	2 cut(s)	129, 495
HpyAV	CCTTC	6 cut(s)	103, 268, 683, 753, 1044, 1328
HpyCH4III	ACNGT	4 cut(s)	450, 502, 524, 1007
HpyCH4IV	ACGT	3 cut(s)	436, 490, 781
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 405, 571
HpyF3I	CTNAG	9 cut(s)	279, 402, 409, 586, 595, 658, 682, 1038, 1296
HpySE526I	ACGT	3 cut(s)	436, 490, 781
Hsp92II	CATG	6 cut(s)	993, 1143, 1226, 1330, 1414, 1437
HspAI	GCGC	2 cut(s)	63, 158
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	5 cut(s)	184, 301, 577, 601, 1342
LmnI	GCTCC	3 cut(s)	246, 670, 753
Lsp1109I	GCAGC	1 cut(s)	595
LweI	GCATC	6 cut(s)	62, 145, 566, 724, 1052, 1411
MaeI	CTAG	3 cut(s)	347, 575, 801
MaeII	ACGT	3 cut(s)	436, 490, 781
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	5 cut(s)	186, 303, 579, 603, 1344
MboI	GATC	5 cut(s)	184, 301, 577, 601, 1342
MfeI	CAATTG	1 cut(s)	1157
MflI	RGATCY	3 cut(s)	577, 601, 1342
MhlI	GDGCHC	2 cut(s)	667, 1222
MlyI	GAGTC	4 cut(s)	130, 716, 1354, 1396
MmeI	TCCRAC	1 cut(s)	1382
MnlI	CCTC	9 cut(s)	225, 347, 507, 563, 604, 861, 953, 1033, 1377
Mph1103I	ATGCAT	3 cut(s)	559, 995, 1328
MroXI	GAANNNNTTC	2 cut(s)	438, 1244
MseI	TTAA	2 cut(s)	906, 1118
MspI	CCGG	1 cut(s)	244
MspR9I	CCNGG	1 cut(s)	881
MunI	CAATTG	1 cut(s)	1157
Mva1269I	GAATGC	1 cut(s)	1328
MvaI	CCWGG	1 cut(s)	881
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	3 cut(s)	164, 405, 571
NdeI	CATATG	1 cut(s)	417
NdeII	GATC	5 cut(s)	184, 301, 577, 601, 1342
NlaIII	CATG	6 cut(s)	993, 1143, 1226, 1330, 1414, 1437
NmuCI	GTSAC	1 cut(s)	496
NruI	TCGCGA	1 cut(s)	129
NsiI	ATGCAT	3 cut(s)	559, 995, 1328
NspI	RCATGY	2 cut(s)	993, 1226
NspV	TTCGAA	1 cut(s)	44
PaeI	GCATGC	1 cut(s)	993
PaeR7I	CTCGAG	2 cut(s)	832, 1404
PctI	GAATGC	1 cut(s)	1328
PdmI	GAANNNNTTC	2 cut(s)	438, 1244
PfeI	GAWTC	7 cut(s)	46, 131, 329, 640, 860, 884, 1307
PkrI	GCNGC	1 cut(s)	610
PleI	GAGTC	4 cut(s)	129, 716, 1354, 1396
PpsI	GAGTC	4 cut(s)	129, 716, 1354, 1396
PsiI	TTATAA	2 cut(s)	461, 1011
Psp6I	CCWGG	1 cut(s)	879
PspGI	CCWGG	1 cut(s)	879
PspXI	VCTCGAGB	2 cut(s)	832, 1404
PsuI	RGATCY	3 cut(s)	577, 601, 1342
RruI	TCGCGA	1 cut(s)	129
SalI	GTCGAC	1 cut(s)	1075
SaqAI	TTAA	2 cut(s)	906, 1118
SatI	GCNGC	1 cut(s)	609
Sau3AI	GATC	5 cut(s)	184, 301, 577, 601, 1342
SchI	GAGTC	4 cut(s)	130, 716, 1354, 1396
ScrFI	CCNGG	1 cut(s)	881
SduI	GDGCHC	2 cut(s)	667, 1222
SfaNI	GCATC	6 cut(s)	62, 145, 566, 724, 1052, 1411
SfcI	CTRYAG	1 cut(s)	501
Sfr274I	CTCGAG	2 cut(s)	832, 1404
SfuI	TTCGAA	1 cut(s)	44
SlaI	CTCGAG	2 cut(s)	832, 1404
SmlI	CTYRAG	3 cut(s)	832, 974, 1404
SmoI	CTYRAG	3 cut(s)	832, 974, 1404
SpeI	ACTAGT	1 cut(s)	800
SphI	GCATGC	1 cut(s)	993
SsiI	CCGC	3 cut(s)	692, 767, 877
SspI	AATATT	1 cut(s)	1261
SspMI	CTAG	3 cut(s)	347, 575, 801
StyD4I	CCNGG	1 cut(s)	879
StyI	CCWWGG	1 cut(s)	1092
TaaI	ACNGT	4 cut(s)	450, 502, 524, 1007
TaiI	ACGT	3 cut(s)	439, 493, 784
TaqI	TCGA	7 cut(s)	44, 143, 833, 1076, 1199, 1292, 1405
TfiI	GAWTC	7 cut(s)	46, 131, 329, 640, 860, 884, 1307
Tru1I	TTAA	2 cut(s)	906, 1118
Tru9I	TTAA	2 cut(s)	906, 1118
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	1 cut(s)	608
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	4 cut(s)	431, 665, 774, 1335
VneI	GTGCAC	1 cut(s)	1218
XapI	RAATTY	3 cut(s)	40, 811, 963
XceI	RCATGY	2 cut(s)	993, 1226
XhoI	CTCGAG	2 cut(s)	832, 1404
XmiI	GTMKAC	2 cut(s)	504, 1076
XmnI	GAANNNNTTC	2 cut(s)	438, 1244
XspI	CTAG	3 cut(s)	347, 575, 801
Zsp2I	ATGCAT	3 cut(s)	559, 995, 1328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.