Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009921

Physical Location & Seq

Genomic Coordinates Reverse (-)

31213959 .. 31218461

Gene Structure 4503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g32260.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGAACCGGAAATCTAGTTGTGCTATTTGTGAGAATTCAAATCTTGCTTCTATCTGTGCTGTTTGTGTGAATTACAGATTAAATGAGTATAACAATTCGTTAAAGGTACTGAAGAGTCGTCGTGATTCATTGTATTCAAGATTGACTGAAGTGCTTGTCGCAAAGGGTAAGGCTGATGATCAAATAAATTGGAGAGTGCTTCAAAATGAGAAGCTTGTGAGATTAAGGGAAAAGCTCCAGTGTAATACAGAACAGCTTGTGCAAGGGAAGGCTAAGATTGAGAAGACATCCTATGACCTCAAAGTCAAATATGGGGTGCTTGATTCGGCCCTCTCTGTGTTGAGAAAGAATCGTGTGGAGCAATTGGATAAGTTCTATCCTAACCTTATATGCACTCAGAACTTAGGGCATATGGCCATTACCTCTGAACGCCTTCATAAGCAGTCAGTAGTTATAAAACAAATATGCAAATTATTTCCCCAACGTCGGGTGATTGTAGATGAAAAGAAGAATGATGGATCTGGTGGTCTATATGATCAAATTTGCAATGCATGCTTACCAAGAGGGCTAGATCCACACACTGTTCCATCAGAAGAGCTTGCTGCTTCCCTGGGGTACATGGTTCAACTCCTGAATCTTGTTGTTCATAACTTAGCTGCTCCAGCACTTCATAACTCAGGTTTTGCGGGTTCTTGCTCTCGGATATGGCAAAGAGATTCTTATTGGGATGCATCCCCTTCTTCTCGGAGCAATGAATATCCCCTCTTTATACCACGCCAAAATTATTGCTCCAGTAGCGGGGAAAATTCTTGGTCTGACAGGAGCTCAAGTAATAATTTTGGTGTTGCTTCAATAGAATCCGTGAGAAAACCGCGTCTGGATTCTTCTGGTGGTAGCTTTAATTATTCTTCTGCTTCTGCACACAGTGTTGAAACGCACAAAGATTTGCAGAGAGGGATTTCACTTCTTAAGAAAAGTGTGGCATGCATTACAGCGTATTGTTATAACTCACTATGTTTAGATGTCCCTTCTGAGGTATCTACATTTGAAGCATTTGCTAAATTGTTGGCAACATTATCTTCTTCCAAGGAAGTTCATTCTGTGTTCTCGTTGAAAATGGCTTGCTCGAGGTCATGTAAGCAAGTTAAACAATTAAACAAGTCTGTGTGGAATGTGAATTCTGCCATATCGTCAACCACTCTGTTGGATAGCGCACATGCAATGGCACTAACGAAAAACTTAAATGAAAACAACCTTCTTTGTTCCACTGAGTTGTCTGAAGGGAAGAATGAATCCCTTATTGAAGGATGGGATCTTGTGGAACATCCGACTTTTCCCCCTCCACCATCACAGTCCGAGGATATTGAGCATTGGACTCGAGCCATGATCATCGATGCTAAAAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Atg14

Protein Analysis

470

Amino Acids

52.33

Weight (kDa)

8.84

Isoelectric Point (pI)

54.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08540
fragaria_vesca	FvH4_5g38340 FvH4_5g38340 FvH4_5g38340
malus_domestica	MD08G1174500.v1.1 MD15G1361100.v1.1
prunus_persica	Prupe.1G508500_v2.0.a1 Prupe.1G508500_v2.0.a1 Prupe.1G508500_v2.0.a1 Prupe.1G508500_v2.0.a1
pyrus_communis	pycom15g32260
rosa_chinensis	RchiOBHm_Chr7g0240361
rosa_laevigata	RLG00000000683
rosa_multiflora	Rmu_sc0002676.1_g000011
rosa_roxburghii	Rroxscaffold_3G00220190
rosa_rugosa	Rorug07G0335000
rosa_samantha	Rh7AG489400 Rh7BG462400 Rh7CG505700 Rh7DG473400
rosa_wichuraiana	Rw7G040950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	455, 1005
AasI	GACNNNNNNGTC	1 cut(s)	302
AccII	CGCG	1 cut(s)	874
AciI	CCGC	3 cut(s)	686, 798, 872
AclWI	GGATC	3 cut(s)	526, 566, 1320
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	4 cut(s)	34, 540, 805, 1177
AcuI	CTGAAG	3 cut(s)	131, 168, 1299
AdeI	CACNNNGTG	1 cut(s)	926
AfaI	GTAC	2 cut(s)	108, 617
AfiI	CCNNNNNNNGG	4 cut(s)	486, 487, 798, 1033
AflII	CTTAAG	1 cut(s)	968
AgsI	TTSAA	9 cut(s)	39, 138, 203, 626, 852, 932, 1049, 1114, 1304
AjnI	CCWGG	1 cut(s)	609
AluBI	AGCT	7 cut(s)	214, 235, 256, 598, 656, 825, 897
AluI	AGCT	7 cut(s)	214, 235, 256, 598, 656, 825, 897
Alw21I	GWGCWC	1 cut(s)	827
AlwI	GGATC	3 cut(s)	526, 566, 1320
Ama87I	CYCGRG	2 cut(s)	1126, 1377
AoxI	GGCC	2 cut(s)	327, 414
ApeKI	GCWGC	2 cut(s)	602, 656
ApoI	RAATTY	4 cut(s)	34, 540, 805, 1177
Asp700I	GAANNNNTTC	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	1214
AspS9I	GGNCC	1 cut(s)	328
AsuHPI	GGTGA	1 cut(s)	502
AvaI	CYCGRG	2 cut(s)	1126, 1377
BalI	TGGCCA	1 cut(s)	416
BanII	GRGCYC	1 cut(s)	827
BbsI	GAAGAC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	827
BbvI	GCAGC	2 cut(s)	589, 643
BccI	CCATC	4 cut(s)	509, 595, 1302, 1354
BcgI	CGANNNNNNTGC	2 cut(s)	1358, 1392
BciT130I	CCWGG	1 cut(s)	611
BclI	TGATCA	3 cut(s)	178, 535, 1386
BfaI	CTAG	2 cut(s)	15, 569
BfrI	CTTAAG	1 cut(s)	968
BisI	GCNGC	2 cut(s)	603, 657
BlsI	GCNGC	2 cut(s)	604, 658
Bme1390I	CCNGG	1 cut(s)	611
BmeT110I	CYCGRG	2 cut(s)	1126, 1377
BmgT120I	GGNCC	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	611
BmsI	GCATC	3 cut(s)	718, 740, 1384
BpiI	GAAGAC	1 cut(s)	290
BpmI	CTGGAG	3 cut(s)	221, 645, 775
BpuEI	CTTGAG	1 cut(s)	811
Bsa29I	ATCGAT	1 cut(s)	1392
BsaJI	CCNNGG	4 cut(s)	609, 610, 1086, 1356
BsaWI	WCCGGW	1 cut(s)	6
BsaXI	ACNNNNNCTCC	2 cut(s)	814, 844
Bsc4I	CCNNNNNNNGG	4 cut(s)	486, 487, 798, 1033
Bse1I	ACTGG	2 cut(s)	238, 792
Bse3DI	GCAATG	3 cut(s)	553, 757, 1227
BseBI	CCWGG	1 cut(s)	611
BseCI	ATCGAT	1 cut(s)	1392
BseDI	CCNNGG	4 cut(s)	609, 610, 1086, 1356
BseGI	GGATG	5 cut(s)	287, 731, 733, 1313, 1324
BseLI	CCNNNNNNNGG	4 cut(s)	486, 487, 798, 1033
BseMI	GCAATG	3 cut(s)	553, 757, 1227
BseMII	CTCAG	4 cut(s)	410, 690, 1023, 1260
BseNI	ACTGG	2 cut(s)	238, 792
BseXI	GCAGC	2 cut(s)	589, 643
BsgI	GTGCAG	1 cut(s)	903
Bsh1236I	CGCG	1 cut(s)	874
BshFI	GGCC	2 cut(s)	329, 416
BshVI	ATCGAT	1 cut(s)	1392
BsiHKAI	GWGCWC	1 cut(s)	827
BsiHKCI	CYCGRG	2 cut(s)	1126, 1377
BsiSI	CCGG	1 cut(s)	7
BslFI	GGGAC	1 cut(s)	1010
BslI	CCNNNNNNNGG	4 cut(s)	486, 487, 798, 1033
BsmFI	GGGAC	1 cut(s)	1010
BsnI	GGCC	2 cut(s)	329, 416
BsoBI	CYCGRG	2 cut(s)	1126, 1377
Bsp1286I	GDGCHC	1 cut(s)	827
Bsp143I	GATC	6 cut(s)	178, 518, 535, 571, 1312, 1386
BspACI	CCGC	3 cut(s)	686, 798, 872
BspANI	GGCC	2 cut(s)	329, 416
BspCNI	CTCAG	4 cut(s)	409, 689, 1024, 1261
BspDI	ATCGAT	1 cut(s)	1392
BspFNI	CGCG	1 cut(s)	874
BspPI	GGATC	3 cut(s)	526, 566, 1320
BspQI	GCTCTTC	1 cut(s)	588
BspTI	CTTAAG	1 cut(s)	968
BsrDI	GCAATG	3 cut(s)	553, 757, 1227
BsrI	ACTGG	2 cut(s)	238, 792
BssECI	CCNNGG	4 cut(s)	609, 610, 1086, 1356
BssMI	GATC	6 cut(s)	178, 518, 535, 571, 1312, 1386
BssT1I	CCWWGG	1 cut(s)	1086
Bst2UI	CCWGG	1 cut(s)	611
Bst4CI	ACNGT	3 cut(s)	583, 926, 1353
Bst6I	CTCTTC	2 cut(s)	107, 588
BstAFI	CTTAAG	1 cut(s)	968
BstAPI	GCANNNNNTGC	1 cut(s)	552
BstC8I	GCNNGC	4 cut(s)	553, 600, 985, 1123
BstDEI	CTNAG	7 cut(s)	273, 396, 403, 652, 676, 1032, 1269
BstF5I	GGATG	5 cut(s)	287, 731, 733, 1313, 1324
BstFNI	CGCG	1 cut(s)	874
BstHHI	GCGC	1 cut(s)	1214
BstKTI	GATC	6 cut(s)	181, 521, 538, 574, 1315, 1389
BstMBI	GATC	6 cut(s)	178, 518, 535, 571, 1312, 1386
BstMWI	GCNNNNNNNGC	3 cut(s)	552, 662, 795
BstNI	CCWGG	1 cut(s)	611
BstNSI	RCATGY	3 cut(s)	555, 987, 1220
BstSCI	CCNGG	1 cut(s)	609
BstUI	CGCG	1 cut(s)	874
BstV1I	GCAGC	2 cut(s)	589, 643
BstV2I	GAAGAC	1 cut(s)	290
BstX2I	RGATCY	3 cut(s)	518, 571, 1312
BstXI	CCANNNNNNTGG	1 cut(s)	1204
BstYI	RGATCY	3 cut(s)	518, 571, 1312
Bsu15I	ATCGAT	1 cut(s)	1392
BsuRI	GGCC	2 cut(s)	329, 416
BsuTUI	ATCGAT	1 cut(s)	1392
BtsCI	GGATG	5 cut(s)	287, 731, 733, 1313, 1324
BtsIMutI	CAGTG	4 cut(s)	245, 579, 931, 1266
Cac8I	GCNNGC	4 cut(s)	553, 600, 985, 1123
CfoI	GCGC	1 cut(s)	1214
Cfr13I	GGNCC	1 cut(s)	328
ClaI	ATCGAT	1 cut(s)	1392
CseI	GACGC	1 cut(s)	863
Csp6I	GTAC	2 cut(s)	107, 616
CviAII	CATG	6 cut(s)	552, 619, 984, 1134, 1217, 1384
CviQI	GTAC	2 cut(s)	107, 616
DdeI	CTNAG	7 cut(s)	273, 396, 403, 652, 676, 1032, 1269
DpnI	GATC	6 cut(s)	180, 520, 537, 573, 1314, 1388
DpnII	GATC	6 cut(s)	178, 518, 535, 571, 1312, 1386
DraIII	CACNNNGTG	1 cut(s)	926
DrdI	GACNNNNNNGTC	1 cut(s)	302
DseDI	GACNNNNNNGTC	1 cut(s)	302
EaeI	YGGCCR	1 cut(s)	414
Eam1104I	CTCTTC	2 cut(s)	107, 588
EarI	CTCTTC	2 cut(s)	107, 588
Ecl136II	GAGCTC	1 cut(s)	825
Eco130I	CCWWGG	1 cut(s)	1086
Eco24I	GRGCYC	1 cut(s)	827
Eco53kI	GAGCTC	1 cut(s)	825
Eco57I	CTGAAG	3 cut(s)	131, 168, 1299
Eco88I	CYCGRG	2 cut(s)	1126, 1377
EcoICRI	GAGCTC	1 cut(s)	825
EcoRI	GAATTC	2 cut(s)	34, 1177
EcoRII	CCWGG	1 cut(s)	609
EcoT14I	CCWWGG	1 cut(s)	1086
EcoT22I	ATGCAT	3 cut(s)	553, 733, 989
EcoT38I	GRGCYC	1 cut(s)	827
ErhI	CCWWGG	1 cut(s)	1086
FaeI	CATG	6 cut(s)	555, 622, 987, 1137, 1220, 1387
FalI	AAGNNNNNCTT	2 cut(s)	703, 735
FaqI	GGGAC	1 cut(s)	1010
FatI	CATG	6 cut(s)	551, 618, 983, 1133, 1216, 1383
FauI	CCCGC	2 cut(s)	679, 791
FauNDI	CATATG	1 cut(s)	411
FbaI	TGATCA	3 cut(s)	178, 535, 1386
Fnu4HI	GCNGC	2 cut(s)	603, 657
FokI	GGATG	5 cut(s)	274, 718, 740, 1311, 1320
FriOI	GRGCYC	1 cut(s)	827
Fsp4HI	GCNGC	2 cut(s)	603, 657
FspBI	CTAG	2 cut(s)	15, 569
GlaI	GCGC	1 cut(s)	1213
GluI	GCNGC	2 cut(s)	603, 657
GsuI	CTGGAG	3 cut(s)	221, 645, 775
HaeIII	GGCC	2 cut(s)	329, 416
HapII	CCGG	1 cut(s)	7
HgaI	GACGC	1 cut(s)	863
HhaI	GCGC	1 cut(s)	1214
Hin1II	CATG	6 cut(s)	555, 622, 987, 1137, 1220, 1387
Hin6I	GCGC	1 cut(s)	1212
HinP1I	GCGC	1 cut(s)	1212
HincII	GTYRAC	1 cut(s)	1194
HindII	GTYRAC	1 cut(s)	1194
HindIII	AAGCTT	1 cut(s)	212
HpaII	CCGG	1 cut(s)	7
HphI	GGTGA	1 cut(s)	502
Hpy166II	GTNNAC	1 cut(s)	1194
Hpy188III	TCNNGA	4 cut(s)	122, 138, 631, 878
Hpy8I	GTNNAC	1 cut(s)	1194
Hpy99I	CGWCG	2 cut(s)	123, 489
HpyAV	CCTTC	7 cut(s)	262, 443, 747, 1038, 1265, 1274, 1298
HpyCH4III	ACNGT	3 cut(s)	583, 926, 1353
HpyCH4IV	ACGT	1 cut(s)	484
HpyF10VI	GCNNNNNNNGC	3 cut(s)	552, 662, 795
HpyF3I	CTNAG	7 cut(s)	273, 396, 403, 652, 676, 1032, 1269
HpySE526I	ACGT	1 cut(s)	484
Hsp92II	CATG	6 cut(s)	555, 622, 987, 1137, 1220, 1387
HspAI	GCGC	1 cut(s)	1212
Ksp22I	TGATCA	3 cut(s)	178, 535, 1386
Kzo9I	GATC	6 cut(s)	178, 518, 535, 571, 1312, 1386
LguI	GCTCTTC	1 cut(s)	588
LmnI	GCTCC	6 cut(s)	240, 358, 664, 747, 794, 822
Lsp1109I	GCAGC	2 cut(s)	589, 643
LweI	GCATC	3 cut(s)	718, 740, 1384
MaeI	CTAG	2 cut(s)	15, 569
MaeII	ACGT	1 cut(s)	484
MalI	GATC	6 cut(s)	180, 520, 537, 573, 1314, 1388
MboI	GATC	6 cut(s)	178, 518, 535, 571, 1312, 1386
MfeI	CAATTG	1 cut(s)	362
MflI	RGATCY	3 cut(s)	518, 571, 1312
MhlI	GDGCHC	1 cut(s)	827
MlsI	TGGCCA	1 cut(s)	416
MluNI	TGGCCA	1 cut(s)	416
MlyI	GAGTC	2 cut(s)	124, 1369
MmeI	TCCRAC	2 cut(s)	1185, 1352
Mox20I	TGGCCA	1 cut(s)	416
Mph1103I	ATGCAT	3 cut(s)	553, 733, 989
MroXI	GAANNNNTTC	1 cut(s)	432
MscI	TGGCCA	1 cut(s)	416
MseI	TTAA	8 cut(s)	80, 101, 224, 900, 969, 1146, 1154, 1241
Msp20I	TGGCCA	1 cut(s)	416
MspCI	CTTAAG	1 cut(s)	968
MspI	CCGG	1 cut(s)	7
MspR9I	CCNGG	1 cut(s)	611
MunI	CAATTG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	611
MvnI	CGCG	1 cut(s)	874
MwoI	GCNNNNNNNGC	3 cut(s)	552, 662, 795
NdeI	CATATG	1 cut(s)	411
NdeII	GATC	6 cut(s)	178, 518, 535, 571, 1312, 1386
NlaIII	CATG	6 cut(s)	555, 622, 987, 1137, 1220, 1387
NsiI	ATGCAT	3 cut(s)	553, 733, 989
NspI	RCATGY	3 cut(s)	555, 987, 1220
PaeI	GCATGC	2 cut(s)	555, 987
PaeR7I	CTCGAG	2 cut(s)	1126, 1377
PasI	CCCWGGG	1 cut(s)	610
PciSI	GCTCTTC	1 cut(s)	588
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	8 cut(s)	125, 323, 349, 634, 716, 857, 881, 1292
PkrI	GCNGC	2 cut(s)	604, 658
PleI	GAGTC	2 cut(s)	123, 1369
PpsI	GAGTC	2 cut(s)	123, 1369
PsiI	TTATAA	2 cut(s)	455, 1005
Psp124BI	GAGCTC	1 cut(s)	827
Psp6I	CCWGG	1 cut(s)	609
PspGI	CCWGG	1 cut(s)	609
PspPI	GGNCC	1 cut(s)	328
PspXI	VCTCGAGB	2 cut(s)	1126, 1377
PsuI	RGATCY	3 cut(s)	518, 571, 1312
RsaI	GTAC	2 cut(s)	108, 617
RsaNI	GTAC	2 cut(s)	107, 616
SacI	GAGCTC	1 cut(s)	827
SapI	GCTCTTC	1 cut(s)	588
SaqAI	TTAA	8 cut(s)	80, 101, 224, 900, 969, 1146, 1154, 1241
SatI	GCNGC	2 cut(s)	603, 657
Sau3AI	GATC	6 cut(s)	178, 518, 535, 571, 1312, 1386
Sau96I	GGNCC	1 cut(s)	328
SchI	GAGTC	2 cut(s)	124, 1369
ScrFI	CCNGG	1 cut(s)	611
SduI	GDGCHC	1 cut(s)	827
SfaNI	GCATC	3 cut(s)	718, 740, 1384
Sfr274I	CTCGAG	2 cut(s)	1126, 1377
SlaI	CTCGAG	2 cut(s)	1126, 1377
SmlI	CTYRAG	4 cut(s)	826, 968, 1126, 1377
SmoI	CTYRAG	4 cut(s)	826, 968, 1126, 1377
SphI	GCATGC	2 cut(s)	555, 987
SsiI	CCGC	3 cut(s)	686, 798, 872
SspMI	CTAG	2 cut(s)	15, 569
SstI	GAGCTC	1 cut(s)	827
StyD4I	CCNGG	1 cut(s)	609
StyI	CCWWGG	1 cut(s)	1086
TaaI	ACNGT	3 cut(s)	583, 926, 1353
TaiI	ACGT	1 cut(s)	487
TaqI	TCGA	3 cut(s)	1127, 1378, 1392
TfiI	GAWTC	8 cut(s)	125, 323, 349, 634, 716, 857, 881, 1292
Tru1I	TTAA	8 cut(s)	80, 101, 224, 900, 969, 1146, 1154, 1241
Tru9I	TTAA	8 cut(s)	80, 101, 224, 900, 969, 1146, 1154, 1241
TscAI	CASTG	4 cut(s)	245, 586, 931, 1273
TseI	GCWGC	2 cut(s)	602, 656
TspGWI	ACGGA	1 cut(s)	850
TspRI	CASTG	4 cut(s)	245, 586, 931, 1273
Vha464I	CTTAAG	1 cut(s)	968
XapI	RAATTY	4 cut(s)	34, 540, 805, 1177
XceI	RCATGY	3 cut(s)	555, 987, 1220
XhoI	CTCGAG	2 cut(s)	1126, 1377
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	2 cut(s)	15, 569
Zsp2I	ATGCAT	3 cut(s)	553, 733, 989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.