Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008981

Physical Location & Seq

Genomic Coordinates Reverse (-)

45144631 .. 45146525

Gene Structure 1895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G552300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGATTCCGTTCGAGGACAAGGCGGCATCCAGATGCTGCTAACAGCAGAACAGGATGCTCAACACATTGTTAACAGTGCCAGAACCGCGAAGACGGCGCGCTTGAGGCAAGCTAAAAACGAAGCTGAGAGGGAAGTGCAACTCTATCGCACCAATATGGAGGCTGAGTATGAAAAGATGATTTCAGATACAAGTGGGAGCTCTGGCTCCAATGTAAAAAGGCTTGAGGAGGAAACTGATGCGAAGATTAAAAACTTGAAGGAATCATCCTCAAAGGTCCGATCGGATATCGTCAGCATGCTTATGAAGTATGTCACAACTGTGAAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_G

Protein Analysis

111

Amino Acids

12.33

Weight (kDa)

8.92

Isoelectric Point (pI)

34.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25950 AT4G25950
fragaria_vesca	FvH4_5g32250
malus_domestica	MD08G1220000.v1.1 MD15G1410200.v1.1
prunus_persica	Prupe.1G552300_v2.0.a1
pyrus_communis	pycom08g19090 pycom15g36490
rosa_chinensis	RchiOBHm_Chr7g0228271 RchiOBHm_Chr7g0228351
rosa_roxburghii	Rroxscaffold_3G00231220
rosa_rugosa	Rorug07G0247800 Rorug07G0247900 Rorug07G0248000 Rorug07G0248100
rosa_samantha	Rh7AG401600 Rh7BG382700 Rh7CG420500 Rh7DG397100 Rh7DG397700
rosa_wichuraiana	Rw7G033320 Rw7G033380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	89, 100
AciI	CCGC	2 cut(s)	24, 87
AgsI	TTSAA	1 cut(s)	259
AleI	CACNNNNGTG	1 cut(s)	320
AluBI	AGCT	3 cut(s)	113, 125, 201
AluI	AGCT	3 cut(s)	113, 125, 201
Alw21I	GWGCWC	1 cut(s)	203
AlwNI	CAGNNNCTG	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	37
AspLEI	GCGC	2 cut(s)	100, 102
AspS9I	GGNCC	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	203
BbsI	GAAGAC	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	24
BceAI	ACGGC	1 cut(s)	111
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BisI	GCNGC	2 cut(s)	25, 38
BlsI	GCNGC	2 cut(s)	26, 39
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	208
BmsI	GCATC	4 cut(s)	24, 36, 46, 229
BpiI	GAAGAC	1 cut(s)	98
BpuEI	CTTGAG	2 cut(s)	124, 245
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
BseGI	GGATG	3 cut(s)	27, 61, 266
BseMII	CTCAG	2 cut(s)	117, 156
BsePI	GCGCGC	1 cut(s)	98
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	24
Bsh1236I	CGCG	2 cut(s)	89, 100
Bsh1285I	CGRYCG	1 cut(s)	284
BsiEI	CGRYCG	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	1 cut(s)	281
BspACI	CCGC	2 cut(s)	24, 87
BspCNI	CTCAG	2 cut(s)	118, 157
BspFNI	CGCG	2 cut(s)	89, 100
BspLI	GGNNCC	1 cut(s)	208
BssHII	GCGCGC	1 cut(s)	98
BssMI	GATC	1 cut(s)	281
Bst4CI	ACNGT	2 cut(s)	77, 322
BstC8I	GCNNGC	3 cut(s)	100, 111, 299
BstDEI	CTNAG	2 cut(s)	126, 165
BstF5I	GGATG	3 cut(s)	27, 61, 266
BstFNI	CGCG	2 cut(s)	89, 100
BstHHI	GCGC	2 cut(s)	100, 102
BstKTI	GATC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	281
BstMCI	CGRYCG	1 cut(s)	284
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 95, 106
BstNSI	RCATGY	1 cut(s)	301
BstUI	CGCG	2 cut(s)	89, 100
BstV1I	GCAGC	1 cut(s)	24
BstV2I	GAAGAC	1 cut(s)	98
BtsCI	GGATG	3 cut(s)	27, 61, 266
BtsIMutI	CAGTG	1 cut(s)	82
Cac8I	GCNNGC	3 cut(s)	100, 111, 299
CaiI	CAGNNNCTG	1 cut(s)	37
CfoI	GCGC	2 cut(s)	100, 102
Cfr13I	GGNCC	1 cut(s)	277
CviAII	CATG	1 cut(s)	298
CviJI	RGCY	6 cut(s)	113, 125, 164, 201, 207, 223
CviKI_1	RGCY	6 cut(s)	113, 125, 164, 201, 207, 223
DdeI	CTNAG	2 cut(s)	126, 165
DpnI	GATC	1 cut(s)	283
DpnII	GATC	1 cut(s)	281
Ecl136II	GAGCTC	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	203
Eco32I	GATATC	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	277
Eco53kI	GAGCTC	1 cut(s)	201
EcoICRI	GAGCTC	1 cut(s)	201
EcoRV	GATATC	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	203
FaeI	CATG	1 cut(s)	301
FaiI	YATR	5 cut(s)	158, 171, 299, 305, 312
FatI	CATG	1 cut(s)	297
Fnu4HI	GCNGC	2 cut(s)	25, 38
FokI	GGATG	3 cut(s)	14, 68, 253
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	2 cut(s)	25, 38
GlaI	GCGC	2 cut(s)	99, 101
GluI	GCNGC	2 cut(s)	25, 38
HhaI	GCGC	2 cut(s)	100, 102
Hin1II	CATG	1 cut(s)	301
Hin6I	GCGC	2 cut(s)	98, 100
HinP1I	GCGC	2 cut(s)	98, 100
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	2 cut(s)	5, 263
HpaI	GTTAAC	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	3 cut(s)	187, 281, 286
Hpy188III	TCNNGA	1 cut(s)	31
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	2 cut(s)	77, 322
HpyCH4V	TGCA	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 95, 106
HpyF3I	CTNAG	2 cut(s)	126, 165
Hsp92II	CATG	1 cut(s)	301
HspAI	GCGC	2 cut(s)	98, 100
KspAI	GTTAAC	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	281
LmnI	GCTCC	2 cut(s)	198, 212
LpnPI	CCDG	4 cut(s)	38, 44, 94, 189
Lsp1109I	GCAGC	1 cut(s)	24
LweI	GCATC	4 cut(s)	24, 36, 46, 229
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	1 cut(s)	283
MboI	GATC	1 cut(s)	281
MboII	GAAGA	2 cut(s)	103, 256
MhlI	GDGCHC	1 cut(s)	203
MnlI	CCTC	7 cut(s)	8, 99, 123, 154, 220, 223, 280
MseI	TTAA	2 cut(s)	72, 249
MslI	CAYNNNNRTG	4 cut(s)	32, 155, 302, 320
MvnI	CGCG	2 cut(s)	89, 100
MwoI	GCNNNNNNNGC	3 cut(s)	86, 95, 106
NdeII	GATC	1 cut(s)	281
NlaIII	CATG	1 cut(s)	301
NlaIV	GGNNCC	1 cut(s)	208
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	1 cut(s)	301
OliI	CACNNNNGTG	1 cut(s)	320
PaeI	GCATGC	1 cut(s)	301
PauI	GCGCGC	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	5, 263
PkrI	GCNGC	2 cut(s)	26, 39
Ple19I	CGATCG	1 cut(s)	284
Psp124BI	GAGCTC	1 cut(s)	203
PspN4I	GGNNCC	1 cut(s)	208
PspPI	GGNCC	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	37
PteI	GCGCGC	1 cut(s)	98
PvuI	CGATCG	1 cut(s)	284
RseI	CAYNNNNRTG	4 cut(s)	32, 155, 302, 320
SacI	GAGCTC	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	72, 249
SatI	GCNGC	2 cut(s)	25, 38
Sau3AI	GATC	1 cut(s)	281
Sau96I	GGNCC	1 cut(s)	277
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	4 cut(s)	115, 127, 203, 279
SfaNI	GCATC	4 cut(s)	24, 36, 46, 229
SinI	GGWCC	1 cut(s)	277
SmiMI	CAYNNNNRTG	4 cut(s)	32, 155, 302, 320
SmlI	CTYRAG	2 cut(s)	103, 224
SmoI	CTYRAG	2 cut(s)	103, 224
SphI	GCATGC	1 cut(s)	301
SsiI	CCGC	2 cut(s)	24, 87
SstI	GAGCTC	1 cut(s)	203
TaaI	ACNGT	2 cut(s)	77, 322
TaqI	TCGA	1 cut(s)	13
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	2 cut(s)	5, 263
Tru1I	TTAA	2 cut(s)	72, 249
Tru9I	TTAA	2 cut(s)	72, 249
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	2 cut(s)	186, 320
TspRI	CASTG	1 cut(s)	82
VpaK11BI	GGWCC	1 cut(s)	277
XceI	RCATGY	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.