Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0008981

Physical Location & Seq

Genomic Coordinates Reverse (-)

49051730 .. 49052423

Gene Structure 694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G033320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGACTCTGTTAGAGGACAAGGAGGCATCCAGATGCTGCTAACAGTAGAACAGGAAGCTCAACACATTGTTAACAGCGCTAGAAACTGTAAATGCAAGATGGCTCGCTTGAGACAAGCTAAAGAAGAAGCTGAGAGGGAAACAAGTGGGAGTTCTGGATCCAATGTTAAAAGGCTCGAGGAAGAAACAGAAATGAAGATTAAGAGCTTGAAGGAATCGGCCTCCAAAGTCCAATCAGATATTGTTGGCATGGTTATGAAGTATATCACTGATGTGAAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_G

Protein Analysis

94

Amino Acids

10.49

Weight (kDa)

8.62

Isoelectric Point (pI)

46.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-ATPase_G	PF03179	7 - 47	1.6e-10	Vacuolar (H+)-ATPase G subunit
V-ATPase_G	PF03179	46 - 93	8.6e-06	Vacuolar (H+)-ATPase G subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25950 AT4G25950
fragaria_vesca	FvH4_5g32250
malus_domestica	MD08G1220000.v1.1 MD15G1410200.v1.1
prunus_persica	Prupe.1G552300_v2.0.a1
pyrus_communis	pycom08g19090 pycom15g36490
rosa_chinensis	RchiOBHm_Chr7g0228271 RchiOBHm_Chr7g0228351
rosa_roxburghii	Rroxscaffold_3G00231220
rosa_rugosa	Rorug07G0247800 Rorug07G0247900 Rorug07G0248000 Rorug07G0248100
rosa_samantha	Rh7AG401600 Rh7BG382700 Rh7CG420500 Rh7DG397100 Rh7DG397700
rosa_wichuraiana	Rw7G033320 Rw7G033380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	153, 166
AcsI	RAATTY	1 cut(s)	279
AfeI	AGCGCT	1 cut(s)	79
AgsI	TTSAA	1 cut(s)	211
AleI	CACNNNNGTG	1 cut(s)	272
AluBI	AGCT	4 cut(s)	59, 119, 131, 207
AluI	AGCT	4 cut(s)	59, 119, 131, 207
Alw26I	GTCTC	1 cut(s)	106
AlwI	GGATC	2 cut(s)	153, 166
AlwNI	CAGNNNCTG	1 cut(s)	37
Ama87I	CYCGRG	1 cut(s)	176
Aor51HI	AGCGCT	1 cut(s)	79
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	37
ApoI	RAATTY	1 cut(s)	279
AspLEI	GCGC	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	176
BamHI	GGATCC	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	24
BccI	CCATC	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	81
BfoI	RGCGCY	1 cut(s)	81
BisI	GCNGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	39
BmeT110I	CYCGRG	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	160
BmsI	GCATC	2 cut(s)	24, 36
BpuEI	CTTGAG	1 cut(s)	130
BseGI	GGATG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	24
BshFI	GGCC	1 cut(s)	221
BsiHKCI	CYCGRG	1 cut(s)	176
BsmAI	GTCTC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	221
BsoBI	CYCGRG	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	158
BspANI	GGCC	1 cut(s)	221
BspCNI	CTCAG	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	160
BspPI	GGATC	2 cut(s)	153, 166
BssMI	GATC	1 cut(s)	158
Bst4CI	ACNGT	2 cut(s)	46, 89
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	1 cut(s)	132
BstF5I	GGATG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	1 cut(s)	161
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	158
BstV1I	GCAGC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	106
CaiI	CAGNNNCTG	1 cut(s)	37
CfoI	GCGC	1 cut(s)	80
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	7 cut(s)	59, 104, 119, 131, 175, 207, 221
CviKI_1	RGCY	7 cut(s)	59, 104, 119, 131, 175, 207, 221
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	1 cut(s)	160
DpnII	GATC	1 cut(s)	158
Eco47III	AGCGCT	1 cut(s)	79
Eco88I	CYCGRG	1 cut(s)	176
FaeI	CATG	1 cut(s)	253
FaiI	YATR	3 cut(s)	251, 257, 264
FatI	CATG	1 cut(s)	249
Fnu4HI	GCNGC	1 cut(s)	38
FokI	GGATG	1 cut(s)	14
Fsp4HI	GCNGC	1 cut(s)	38
FspBI	CTAG	1 cut(s)	81
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	1 cut(s)	38
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	221
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	1 cut(s)	253
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	2 cut(s)	5, 215
HpaI	GTTAAC	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	2 cut(s)	31, 156
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	2 cut(s)	46, 89
HpyCH4V	TGCA	1 cut(s)	96
HpyF3I	CTNAG	1 cut(s)	132
Hsp92II	CATG	1 cut(s)	253
HspAI	GCGC	1 cut(s)	78
KspAI	GTTAAC	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	158
LpnPI	CCDG	3 cut(s)	38, 44, 141
Lsp1109I	GCAGC	1 cut(s)	24
LweI	GCATC	2 cut(s)	24, 36
MaeI	CTAG	1 cut(s)	81
MalI	GATC	1 cut(s)	160
MboI	GATC	1 cut(s)	158
MboII	GAAGA	3 cut(s)	137, 194, 208
MflI	RGATCY	1 cut(s)	158
MluCI	AATT	1 cut(s)	279
MnlI	CCTC	5 cut(s)	8, 17, 129, 172, 232
MseI	TTAA	3 cut(s)	72, 168, 201
MslI	CAYNNNNRTG	3 cut(s)	32, 254, 272
NdeII	GATC	1 cut(s)	158
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	1 cut(s)	160
OliI	CACNNNNGTG	1 cut(s)	272
PaeR7I	CTCGAG	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	160
PspXI	VCTCGAGB	1 cut(s)	176
PstNI	CAGNNNCTG	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	158
RseI	CAYNNNNRTG	3 cut(s)	32, 254, 272
SaqAI	TTAA	3 cut(s)	72, 168, 201
SatI	GCNGC	1 cut(s)	38
Sau3AI	GATC	1 cut(s)	158
SetI	ASST	4 cut(s)	61, 121, 133, 209
SfaNI	GCATC	2 cut(s)	24, 36
Sfr274I	CTCGAG	1 cut(s)	176
SlaI	CTCGAG	1 cut(s)	176
SmiMI	CAYNNNNRTG	3 cut(s)	32, 254, 272
SmlI	CTYRAG	2 cut(s)	109, 176
SmoI	CTYRAG	2 cut(s)	109, 176
Sse9I	AATT	1 cut(s)	279
SspMI	CTAG	1 cut(s)	81
TaaI	ACNGT	2 cut(s)	46, 89
TaqI	TCGA	1 cut(s)	177
TasI	AATT	1 cut(s)	279
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	3 cut(s)	72, 168, 201
Tru9I	TTAA	3 cut(s)	72, 168, 201
TscAI	CASTG	1 cut(s)	274
TseI	GCWGC	1 cut(s)	37
TspDTI	ATGAA	2 cut(s)	209, 272
TspRI	CASTG	1 cut(s)	274
XapI	RAATTY	1 cut(s)	279
XhoI	CTCGAG	1 cut(s)	176
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.