Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008981

Physical Location & Seq

Genomic Coordinates Forward (+)

22952564 .. 22953118

Gene Structure 555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0248100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCAACCACCGTCCCACTTGTCCTCCCGATCTCCACCACCTCTGTCGCCGCCGCCCGATCCATCGAGTCCCAGGCCTCCCAGCCTCGGATCGCCACCCTGGCCTTCCGCGCCTTCATCAACCACATCACCGACACCGTCCGCAACGGCCTCTCGCAGCGCCGCCCCTGGGCCGAGCTTGCCGACCGCTCCGCCTTCGCCAAGCCCGGGTCCTTCTCCGACGCCACCCTCCGCGTCCGCAAGAACTACTCTTACTTCCGCGTCAACTACCTCGCCGTCGTCGCCCTCATCGTAGCCATCTCCCTCTTCACCCACCCCTTCTCCCTCGGCCTCCTCGCCGCCTGGCTCTTCCTCTACCTCTTCCGCCCCTCCGATCAGCCCCTCGTTATCTTCGGCCGGACTTTCTCCGACACCCAAACCCTAATGGGCCTCGTCGGCCTCAGTGTCTTCGTCGTCTTCCTCACCTCCGTCGGATCCGTCCTCATCTCCGCTCTCATGGTCGGAGTTGCCGTCGTACTCCATATTCACCATGATCAATTAACCTGGATAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_G

Protein Analysis

184

Amino Acids

20.22

Weight (kDa)

10.52

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	50 - 173	1.8e-39	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25950 AT4G25950
fragaria_vesca	FvH4_5g32250
malus_domestica	MD08G1220000.v1.1 MD15G1410200.v1.1
prunus_persica	Prupe.1G552300_v2.0.a1
pyrus_communis	pycom08g19090 pycom15g36490
rosa_chinensis	RchiOBHm_Chr7g0228271 RchiOBHm_Chr7g0228351
rosa_roxburghii	Rroxscaffold_3G00231220
rosa_rugosa	Rorug07G0247800 Rorug07G0247900 Rorug07G0248000 Rorug07G0248100
rosa_samantha	Rh7AG401600 Rh7BG382700 Rh7CG420500 Rh7DG397100 Rh7DG397700
rosa_wichuraiana	Rw7G033320 Rw7G033380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	189, 491
AccII	CGCG	3 cut(s)	111, 234, 261
AclWI	GGATC	4 cut(s)	54, 98, 468, 481
AcoI	YGGCCR	1 cut(s)	394
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	1 cut(s)	516
AfiI	CCNNNNNNNGG	3 cut(s)	87, 169, 207
AjnI	CCWGG	5 cut(s)	72, 99, 167, 341, 542
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
AlwI	GGATC	4 cut(s)	54, 98, 468, 481
Ama87I	CYCGRG	1 cut(s)	206
AoxI	GGCC	8 cut(s)	75, 102, 148, 171, 328, 394, 427, 436
ApeKI	GCWGC	1 cut(s)	157
AspLEI	GCGC	2 cut(s)	113, 162
AspS9I	GGNCC	3 cut(s)	171, 210, 427
AsuC2I	CCSGG	2 cut(s)	207, 208
AsuHPI	GGTGA	4 cut(s)	121, 301, 454, 518
AvaI	CYCGRG	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	210
BamHI	GGATCC	1 cut(s)	473
BbsI	GAAGAC	2 cut(s)	439, 448
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	2 cut(s)	71, 305
BceAI	ACGGC	3 cut(s)	163, 260, 494
BciT130I	CCWGG	5 cut(s)	74, 101, 169, 343, 544
BclI	TGATCA	1 cut(s)	532
BcnI	CCSGG	2 cut(s)	207, 208
BfoI	RGCGCY	1 cut(s)	163
BglI	GCCNNNNNGGC	2 cut(s)	101, 435
BisI	GCNGC	5 cut(s)	51, 54, 158, 163, 339
BlsI	GCNGC	5 cut(s)	52, 55, 159, 164, 340
Bme1390I	CCNGG	7 cut(s)	74, 101, 169, 207, 208, 343, 544
Bme18I	GGWCC	1 cut(s)	210
BmeT110I	CYCGRG	1 cut(s)	206
BmgT120I	GGNCC	3 cut(s)	171, 210, 427
BmiI	GGNNCC	2 cut(s)	211, 475
BmrFI	CCNGG	7 cut(s)	74, 101, 169, 207, 208, 343, 544
BpiI	GAAGAC	2 cut(s)	439, 448
BpuMI	CCSGG	2 cut(s)	207, 208
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	7 cut(s)	72, 86, 99, 167, 168, 206, 325
BsaXI	ACNNNNNCTCC	6 cut(s)	9, 39, 305, 335, 495, 525
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 169, 207
BseBI	CCWGG	5 cut(s)	74, 101, 169, 343, 544
BseDI	CCNNGG	7 cut(s)	72, 86, 99, 167, 168, 206, 325
BseLI	CCNNNNNNNGG	3 cut(s)	87, 169, 207
BseMII	CTCAG	1 cut(s)	454
BseRI	GAGGAG	1 cut(s)	323
BseX3I	CGGCCG	1 cut(s)	394
BseXI	GCAGC	1 cut(s)	169
BseYI	CCCAGC	1 cut(s)	81
Bsh1236I	CGCG	3 cut(s)	111, 234, 261
Bsh1285I	CGRYCG	2 cut(s)	187, 397
BshFI	GGCC	8 cut(s)	77, 104, 150, 173, 330, 396, 429, 438
BsiEI	CGRYCG	2 cut(s)	187, 397
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	2 cut(s)	207, 397
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	3 cut(s)	87, 169, 207
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	8 cut(s)	77, 104, 150, 173, 330, 396, 429, 438
BsoBI	CYCGRG	1 cut(s)	206
Bsp143I	GATC	6 cut(s)	30, 59, 90, 373, 473, 532
BspANI	GGCC	8 cut(s)	77, 104, 150, 173, 330, 396, 429, 438
BspCNI	CTCAG	1 cut(s)	453
BspFNI	CGCG	3 cut(s)	111, 234, 261
BspLI	GGNNCC	2 cut(s)	211, 475
BspPI	GGATC	4 cut(s)	54, 98, 468, 481
BspQI	GCTCTTC	1 cut(s)	353
BsrBI	CCGCTC	2 cut(s)	189, 491
BssECI	CCNNGG	7 cut(s)	72, 86, 99, 167, 168, 206, 325
BssMI	GATC	6 cut(s)	30, 59, 90, 373, 473, 532
BssNI	GRCGYC	1 cut(s)	222
Bst2UI	CCWGG	5 cut(s)	74, 101, 169, 343, 544
Bst4CI	ACNGT	2 cut(s)	13, 139
Bst6I	CTCTTC	3 cut(s)	311, 353, 365
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	440
BstFNI	CGCG	3 cut(s)	111, 234, 261
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	2 cut(s)	113, 162
BstKTI	GATC	6 cut(s)	33, 62, 93, 376, 476, 535
BstMBI	GATC	6 cut(s)	30, 59, 90, 373, 473, 532
BstMCI	CGRYCG	2 cut(s)	187, 397
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 110, 179, 281, 435
BstNI	CCWGG	5 cut(s)	74, 101, 169, 343, 544
BstSCI	CCNGG	7 cut(s)	72, 99, 167, 205, 206, 341, 542
BstUI	CGCG	3 cut(s)	111, 234, 261
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	2 cut(s)	439, 448
BstX2I	RGATCY	1 cut(s)	473
BstYI	RGATCY	1 cut(s)	473
BstZI	CGGCCG	1 cut(s)	394
BsuRI	GGCC	8 cut(s)	77, 104, 150, 173, 330, 396, 429, 438
BtsIMutI	CAGTG	1 cut(s)	448
Cac8I	GCNNGC	1 cut(s)	180
CfoI	GCGC	2 cut(s)	113, 162
Cfr13I	GGNCC	3 cut(s)	171, 210, 427
Cfr9I	CCCGGG	1 cut(s)	206
CseI	GACGC	3 cut(s)	223, 230, 250
Csp6I	GTAC	1 cut(s)	515
CviAII	CATG	2 cut(s)	496, 530
CviQI	GTAC	1 cut(s)	515
DdeI	CTNAG	1 cut(s)	440
DpnI	GATC	6 cut(s)	32, 61, 92, 375, 475, 534
DpnII	GATC	6 cut(s)	30, 59, 90, 373, 473, 532
EaeI	YGGCCR	1 cut(s)	394
EagI	CGGCCG	1 cut(s)	394
Eam1104I	CTCTTC	3 cut(s)	311, 353, 365
EarI	CTCTTC	3 cut(s)	311, 353, 365
EciI	GGCGGA	2 cut(s)	181, 353
EclXI	CGGCCG	1 cut(s)	394
Eco147I	AGGCCT	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	210
Eco52I	CGGCCG	1 cut(s)	394
Eco88I	CYCGRG	1 cut(s)	206
EcoO109I	RGGNCCY	1 cut(s)	210
EcoRII	CCWGG	5 cut(s)	72, 99, 167, 341, 542
FaeI	CATG	2 cut(s)	499, 533
FaiI	YATR	3 cut(s)	497, 522, 531
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	2 cut(s)	495, 529
FbaI	TGATCA	1 cut(s)	532
Fnu4HI	GCNGC	5 cut(s)	51, 54, 158, 163, 339
Fsp4HI	GCNGC	5 cut(s)	51, 54, 158, 163, 339
GlaI	GCGC	2 cut(s)	112, 161
GluI	GCNGC	5 cut(s)	51, 54, 158, 163, 339
GsaI	CCCAGC	1 cut(s)	85
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	8 cut(s)	77, 104, 150, 173, 330, 396, 429, 438
HapII	CCGG	2 cut(s)	207, 397
HgaI	GACGC	3 cut(s)	223, 230, 250
HhaI	GCGC	2 cut(s)	113, 162
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	2 cut(s)	499, 533
Hin6I	GCGC	2 cut(s)	111, 160
HinP1I	GCGC	2 cut(s)	111, 160
HincII	GTYRAC	2 cut(s)	6, 265
HindII	GTYRAC	2 cut(s)	6, 265
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	2 cut(s)	207, 397
HphI	GGTGA	4 cut(s)	121, 301, 454, 518
Hpy166II	GTNNAC	2 cut(s)	6, 265
Hpy188I	TCNGA	7 cut(s)	90, 220, 373, 409, 473, 503, 554
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	2 cut(s)	6, 265
Hpy99I	CGWCG	7 cut(s)	224, 281, 284, 437, 455, 473, 515
HpyAV	CCTTC	5 cut(s)	115, 124, 205, 223, 328
HpyCH4III	ACNGT	2 cut(s)	13, 139
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 110, 179, 281, 435
HpyF3I	CTNAG	1 cut(s)	440
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	2 cut(s)	499, 533
HspAI	GCGC	2 cut(s)	111, 160
Ksp22I	TGATCA	1 cut(s)	532
Kzo9I	GATC	6 cut(s)	30, 59, 90, 373, 473, 532
LguI	GCTCTTC	1 cut(s)	353
LmnI	GCTCC	1 cut(s)	194
Lsp1109I	GCAGC	1 cut(s)	169
MalI	GATC	6 cut(s)	32, 61, 92, 375, 475, 534
MbiI	CCGCTC	2 cut(s)	189, 491
MboI	GATC	6 cut(s)	30, 59, 90, 373, 473, 532
MboII	GAAGA	6 cut(s)	298, 340, 352, 382, 439, 448
MflI	RGATCY	1 cut(s)	473
MluCI	AATT	1 cut(s)	536
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	4 cut(s)	243, 432, 451, 481
MseI	TTAA	1 cut(s)	539
MspI	CCGG	2 cut(s)	207, 397
MspR9I	CCNGG	7 cut(s)	74, 101, 169, 207, 208, 343, 544
MvaI	CCWGG	5 cut(s)	74, 101, 169, 343, 544
MvnI	CGCG	3 cut(s)	111, 234, 261
MwoI	GCNNNNNNNGC	5 cut(s)	101, 110, 179, 281, 435
NciI	CCSGG	2 cut(s)	207, 208
NdeII	GATC	6 cut(s)	30, 59, 90, 373, 473, 532
NlaIII	CATG	2 cut(s)	499, 533
NlaIV	GGNNCC	2 cut(s)	211, 475
NmeAIII	GCCGAG	2 cut(s)	199, 306
PasI	CCCWGGG	1 cut(s)	168
PceI	AGGCCT	1 cut(s)	77
PciSI	GCTCTTC	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	2 cut(s)	288, 507
PflFI	GACNNNGTC	1 cut(s)	137
PkrI	GCNGC	5 cut(s)	52, 55, 159, 164, 340
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PpuMI	RGGWCCY	1 cut(s)	210
Psp5II	RGGWCCY	1 cut(s)	210
Psp6I	CCWGG	5 cut(s)	72, 99, 167, 341, 542
PspFI	CCCAGC	1 cut(s)	81
PspGI	CCWGG	5 cut(s)	72, 99, 167, 341, 542
PspN4I	GGNNCC	2 cut(s)	211, 475
PspPI	GGNCC	3 cut(s)	171, 210, 427
PspPPI	RGGWCCY	1 cut(s)	210
PsrI	GAACNNNNNNTAC	2 cut(s)	236, 268
PsuI	RGATCY	1 cut(s)	473
PsyI	GACNNNGTC	1 cut(s)	137
RsaI	GTAC	1 cut(s)	516
RsaNI	GTAC	1 cut(s)	515
SapI	GCTCTTC	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	539
SatI	GCNGC	5 cut(s)	51, 54, 158, 163, 339
Sau3AI	GATC	6 cut(s)	30, 59, 90, 373, 473, 532
Sau96I	GGNCC	3 cut(s)	171, 210, 427
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	7 cut(s)	74, 101, 169, 207, 208, 343, 544
SetI	ASST	6 cut(s)	44, 180, 273, 360, 467, 545
SfiI	GGCCNNNNNGGCC	1 cut(s)	435
SinI	GGWCC	1 cut(s)	210
SmaI	CCCGGG	1 cut(s)	208
Sse9I	AATT	1 cut(s)	536
SseBI	AGGCCT	1 cut(s)	77
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	7 cut(s)	72, 99, 167, 205, 206, 341, 542
TaaI	ACNGT	2 cut(s)	13, 139
TaqI	TCGA	1 cut(s)	66
TasI	AATT	1 cut(s)	536
TauI	GCSGC	4 cut(s)	53, 56, 165, 341
Tru1I	TTAA	1 cut(s)	539
Tru9I	TTAA	1 cut(s)	539
TscAI	CASTG	1 cut(s)	448
TseI	GCWGC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	106
TspGWI	ACGGA	2 cut(s)	457, 466
TspMI	CCCGGG	1 cut(s)	206
TspRI	CASTG	1 cut(s)	448
Tth111I	GACNNNGTC	1 cut(s)	137
VpaK11BI	GGWCC	1 cut(s)	210
XmaI	CCCGGG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.