Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008981

Physical Location & Seq

Genomic Coordinates Reverse (-)

22941076 .. 22944159

Gene Structure 3084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0247900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGGCGAAGATCCGACCGTTGGATCTTCGAAGATCCGACCGTTGGATTTTCGTGATGATTTTTGGAGGGTGATCCTAAGGGCGATCCGTGAGGATCCGACCGTGATTGACGGTCTCCCTTGGGTGAGCGATTTCGGTGTGTATTGTGTTGAATTGAAGACGCAGCGGGAATATCGAGCGGGTAATCCTACAGGTCAGGAGAATCAGGACGGTGATCGTGCGGGTACTGGCAGTGGTGTTGGACTCTTGTTGCTTGTAATTGTTGTGTGGTGGTTACGTAATGTCATAAAGAAGAGGAAAGACAGAATACGCAAGGAAAAATTTTATAAACAGAATGGTGGTTTATTATTAGAACAACAATTATCTTCGGGAGAAGTTAATGTTGAAAAAATTAAGTTGTTCAGTTCAAAGGAATTAGAAAAAGCAACAGATCGTTTTAATGTAGACAGAATTCTTGGAGAGGGAGGCCAAGGTACCGTTTACAAGGGAATGTTGACAGATGGGAGAATTGTTGCGGTAAAGAAATCTAAACTAGCTAATGGAGGTGAAGTTGAACAATTCATTAATGAAATTGTGATTCTTTCACAAATTAACCACAGGAATGTGGTTAAACTATTGGGTTGTTGTTTAGAGACCGAAGTTCCTCTCTTAATCTATGAATTTTTGCCCAATGGAACACTTTCTCAGTATATTCATAATCACCAAGATGAGGAGTTTCCTTTTACATGGGAGACGCGTTTGCGAGTGTCAACCGAAGTTGCAGGAGCTCTTTTCTATTTACACTCGGCAGCTTCTTATCCTATTTACCATCGGGATATCAAGTCTACAAACATCCTCTTAGATGATAAGTATAGGGCAAAAGTTGCAGACTTTGGGACTTCAAGATCAGTTTCTGTTGATCAGACACATCTTACCACACTAGTACACGGAACATTTGGTTATTTAGATCCGGAGTACTTTCAGTCTAGCCAATTTACAGACAAGAGTGACGTGTATAGTTTTGGTGTGGTTCTTGTTGAGCTCTTGACAGGACAAAAACCAGTTTCTGTGACAAGGTCGCAAGAAAGCAGAAGTCTAGCAACTTATTTCCTTATTTCCATGGAGCAGAATTGTCTGTTTGATATTATCGATGCTCAGGTTATGAAGGATGGTGGGAAAGAGGAGATTACAAAAGTAGCTAACATTGCAAGGAGATGTTTAAATTTGAATGGAAAGAATCGTCCTACTATGAAAGAAGTAGCAGCGGAGCTGGAGGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_G

Protein Analysis

420

Amino Acids

47.46

Weight (kDa)

6.07

Isoelectric Point (pI)

31.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	146 - 414	2.2e-48	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	148 - 417	6e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25950 AT4G25950
fragaria_vesca	FvH4_5g32250
malus_domestica	MD08G1220000.v1.1 MD15G1410200.v1.1
prunus_persica	Prupe.1G552300_v2.0.a1
pyrus_communis	pycom08g19090 pycom15g36490
rosa_chinensis	RchiOBHm_Chr7g0228271 RchiOBHm_Chr7g0228351
rosa_roxburghii	Rroxscaffold_3G00231220
rosa_rugosa	Rorug07G0247800 Rorug07G0247900 Rorug07G0248000 Rorug07G0248100
rosa_samantha	Rh7AG401600 Rh7BG382700 Rh7CG420500 Rh7DG397100 Rh7DG397700
rosa_wichuraiana	Rw7G033320 Rw7G033380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	327
Acc65I	GGTACC	1 cut(s)	473
AccB1I	GGYRCC	1 cut(s)	473
AccBSI	CCGCTC	1 cut(s)	179
AccI	GTMKAC	2 cut(s)	444, 824
AccII	CGCG	1 cut(s)	736
AccIII	TCCGGA	1 cut(s)	949
AciI	CCGC	5 cut(s)	166, 179, 221, 515, 1244
AclWI	GGATC	8 cut(s)	5, 28, 31, 67, 79, 89, 102, 941
AcsI	RAATTY	4 cut(s)	320, 450, 659, 1201
AfaI	GTAC	4 cut(s)	226, 475, 924, 956
AfiI	CCNNNNNNNGG	3 cut(s)	20, 43, 709
AflIII	ACRYGT	2 cut(s)	734, 990
AgsI	TTSAA	7 cut(s)	152, 157, 386, 408, 554, 882, 1207
AhlI	ACTAGT	1 cut(s)	919
AjiI	CACGTC	1 cut(s)	991
AluBI	AGCT	6 cut(s)	536, 767, 791, 1021, 1178, 1249
AluI	AGCT	6 cut(s)	536, 767, 791, 1021, 1178, 1249
Alw21I	GWGCWC	2 cut(s)	769, 1023
Alw26I	GTCTC	3 cut(s)	119, 626, 725
AlwI	GGATC	8 cut(s)	5, 28, 31, 67, 79, 89, 102, 941
AlwNI	CAGNNNCTG	2 cut(s)	893, 1046
Aor13HI	TCCGGA	1 cut(s)	949
AoxI	GGCC	1 cut(s)	466
ApeKI	GCWGC	3 cut(s)	163, 788, 1241
ApoI	RAATTY	4 cut(s)	320, 450, 659, 1201
AseI	ATTAAT	1 cut(s)	564
Asp700I	GAANNNNTTC	1 cut(s)	679
Asp718I	GGTACC	1 cut(s)	473
AsuHPI	GGTGA	5 cut(s)	82, 136, 224, 557, 692
AsuII	TTCGAA	1 cut(s)	29
AxyI	CCTNAGG	1 cut(s)	77
BamHI	GGATCC	1 cut(s)	94
BanI	GGYRCC	1 cut(s)	473
BanII	GRGCYC	2 cut(s)	769, 1023
BbsI	GAAGAC	1 cut(s)	164
Bbv12I	GWGCWC	2 cut(s)	769, 1023
BbvI	GCAGC	3 cut(s)	175, 800, 1253
BccI	CCATC	3 cut(s)	494, 816, 1142
BclI	TGATCA	1 cut(s)	898
BcoDI	GTCTC	3 cut(s)	119, 626, 725
BcuI	ACTAGT	1 cut(s)	919
BfaI	CTAG	4 cut(s)	533, 920, 966, 1076
BfmI	CTRYAG	1 cut(s)	189
BisI	GCNGC	3 cut(s)	164, 789, 1242
BlsI	GCNGC	3 cut(s)	165, 790, 1243
BmcAI	AGTACT	1 cut(s)	956
BmgBI	CACGTC	1 cut(s)	991
BmiI	GGNNCC	2 cut(s)	96, 475
BmsI	GCATC	1 cut(s)	1120
BpiI	GAAGAC	1 cut(s)	164
Bpu10I	CCTNAGC	1 cut(s)	1134
Bpu14I	TTCGAA	1 cut(s)	29
Bsa29I	ATCGAT	1 cut(s)	1128
BsaAI	YACGTR	1 cut(s)	278
BsaI	GGTCTC	2 cut(s)	119, 626
BsaJI	CCNNGG	3 cut(s)	119, 469, 1098
BsaWI	WCCGGW	1 cut(s)	949
BsaXI	ACNNNNNCTCC	2 cut(s)	534, 564
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 43, 709
Bse1I	ACTGG	2 cut(s)	232, 1040
Bse21I	CCTNAGG	1 cut(s)	77
Bse3DI	GCAATG	1 cut(s)	1182
BseAI	TCCGGA	1 cut(s)	949
BseCI	ATCGAT	1 cut(s)	1128
BseDI	CCNNGG	3 cut(s)	119, 469, 1098
BseGI	GGATG	2 cut(s)	831, 1153
BseLI	CCNNNNNNNGG	3 cut(s)	20, 43, 709
BseMI	GCAATG	1 cut(s)	1182
BseMII	CTCAG	2 cut(s)	698, 1148
BseNI	ACTGG	2 cut(s)	232, 1040
BseRI	GAGGAG	2 cut(s)	725, 1175
BseXI	GCAGC	3 cut(s)	175, 800, 1253
Bsh1236I	CGCG	1 cut(s)	736
Bsh1285I	CGRYCG	3 cut(s)	18, 41, 102
BshFI	GGCC	1 cut(s)	468
BshNI	GGYRCC	1 cut(s)	473
BshVI	ATCGAT	1 cut(s)	1128
BsiEI	CGRYCG	3 cut(s)	18, 41, 102
BsiHKAI	GWGCWC	2 cut(s)	769, 1023
BsiSI	CCGG	1 cut(s)	950
BslFI	GGGAC	1 cut(s)	889
BslI	CCNNNNNNNGG	3 cut(s)	20, 43, 709
BsmAI	GTCTC	3 cut(s)	119, 626, 725
BsmBI	CGTCTC	1 cut(s)	725
BsmFI	GGGAC	1 cut(s)	889
BsnI	GGCC	1 cut(s)	468
Bso31I	GGTCTC	2 cut(s)	119, 626
Bsp119I	TTCGAA	1 cut(s)	29
Bsp1286I	GDGCHC	2 cut(s)	769, 1023
Bsp13I	TCCGGA	1 cut(s)	949
Bsp19I	CCATGG	1 cut(s)	1098
BspACI	CCGC	5 cut(s)	166, 179, 221, 515, 1244
BspANI	GGCC	1 cut(s)	468
BspCNI	CTCAG	2 cut(s)	697, 1147
BspDI	ATCGAT	1 cut(s)	1128
BspEI	TCCGGA	1 cut(s)	949
BspFNI	CGCG	1 cut(s)	736
BspLI	GGNNCC	2 cut(s)	96, 475
BspPI	GGATC	8 cut(s)	5, 28, 31, 67, 79, 89, 102, 941
BspT104I	TTCGAA	1 cut(s)	29
BspT107I	GGYRCC	1 cut(s)	473
BspTNI	GGTCTC	2 cut(s)	119, 626
BsrBI	CCGCTC	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	1182
BsrI	ACTGG	2 cut(s)	232, 1040
BssECI	CCNNGG	3 cut(s)	119, 469, 1098
BssT1I	CCWWGG	3 cut(s)	119, 469, 1098
Bst4CI	ACNGT	6 cut(s)	19, 42, 103, 113, 212, 478
Bst6I	CTCTTC	1 cut(s)	287
BstAPI	GCANNNNNTGC	1 cut(s)	863
BstBAI	YACGTR	1 cut(s)	278
BstBI	TTCGAA	1 cut(s)	29
BstDEI	CTNAG	4 cut(s)	77, 684, 838, 1134
BstDSI	CCRYGG	1 cut(s)	1098
BstF5I	GGATG	2 cut(s)	831, 1153
BstFNI	CGCG	1 cut(s)	736
BstMAI	GTCTC	3 cut(s)	119, 626, 725
BstMCI	CGRYCG	3 cut(s)	18, 41, 102
BstMWI	GCNNNNNNNGC	2 cut(s)	863, 1184
BstSFI	CTRYAG	1 cut(s)	189
BstSNI	TACGTA	1 cut(s)	278
BstUI	CGCG	1 cut(s)	736
BstV1I	GCAGC	3 cut(s)	175, 800, 1253
BstV2I	GAAGAC	1 cut(s)	164
BstX2I	RGATCY	5 cut(s)	10, 23, 33, 94, 946
BstYI	RGATCY	5 cut(s)	10, 23, 33, 94, 946
Bsu15I	ATCGAT	1 cut(s)	1128
Bsu36I	CCTNAGG	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	468
BsuTUI	ATCGAT	1 cut(s)	1128
BtgI	CCRYGG	1 cut(s)	1098
BtrI	CACGTC	1 cut(s)	991
BtsCI	GGATG	2 cut(s)	831, 1153
BtsI	GCAGTG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	238
CaiI	CAGNNNCTG	2 cut(s)	893, 1046
ClaI	ATCGAT	1 cut(s)	1128
CseI	GACGC	2 cut(s)	169, 742
Csp6I	GTAC	4 cut(s)	225, 474, 923, 955
CviAII	CATG	2 cut(s)	726, 1099
CviJI	RGCY	8 cut(s)	468, 536, 767, 791, 969, 1021, 1178, 1249
CviKI_1	RGCY	8 cut(s)	468, 536, 767, 791, 969, 1021, 1178, 1249
CviQI	GTAC	4 cut(s)	225, 474, 923, 955
DdeI	CTNAG	4 cut(s)	77, 684, 838, 1134
DraI	TTTAAA	1 cut(s)	1200
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
Ecl136II	GAGCTC	2 cut(s)	767, 1021
Eco105I	TACGTA	1 cut(s)	278
Eco130I	CCWWGG	3 cut(s)	119, 469, 1098
Eco24I	GRGCYC	2 cut(s)	769, 1023
Eco31I	GGTCTC	2 cut(s)	119, 626
Eco32I	GATATC	1 cut(s)	817
Eco53kI	GAGCTC	2 cut(s)	767, 1021
Eco81I	CCTNAGG	1 cut(s)	77
EcoICRI	GAGCTC	2 cut(s)	767, 1021
EcoRI	GAATTC	1 cut(s)	450
EcoRV	GATATC	1 cut(s)	817
EcoT14I	CCWWGG	3 cut(s)	119, 469, 1098
EcoT38I	GRGCYC	2 cut(s)	769, 1023
ErhI	CCWWGG	3 cut(s)	119, 469, 1098
Esp3I	CGTCTC	1 cut(s)	725
FaeI	CATG	2 cut(s)	729, 1102
FaqI	GGGAC	1 cut(s)	889
FatI	CATG	2 cut(s)	725, 1098
FauI	CCCGC	3 cut(s)	159, 172, 214
FbaI	TGATCA	1 cut(s)	898
FblI	GTMKAC	2 cut(s)	444, 824
Fnu4HI	GCNGC	3 cut(s)	164, 789, 1242
FokI	GGATG	2 cut(s)	818, 1160
FriOI	GRGCYC	2 cut(s)	769, 1023
Fsp4HI	GCNGC	3 cut(s)	164, 789, 1242
FspBI	CTAG	4 cut(s)	533, 920, 966, 1076
GluI	GCNGC	3 cut(s)	164, 789, 1242
HaeIII	GGCC	1 cut(s)	468
HapII	CCGG	1 cut(s)	950
HgaI	GACGC	2 cut(s)	169, 742
Hin1II	CATG	2 cut(s)	729, 1102
HincII	GTYRAC	2 cut(s)	495, 750
HindII	GTYRAC	2 cut(s)	495, 750
HinfI	GANTC	4 cut(s)	202, 243, 577, 1216
HpaII	CCGG	1 cut(s)	950
HphI	GGTGA	5 cut(s)	82, 136, 224, 557, 692
Hpy166II	GTNNAC	6 cut(s)	445, 481, 495, 750, 825, 925
Hpy188I	TCNGA	4 cut(s)	15, 38, 99, 903
Hpy188III	TCNNGA	8 cut(s)	53, 197, 206, 369, 812, 882, 950, 1024
Hpy8I	GTNNAC	6 cut(s)	445, 481, 495, 750, 825, 925
HpyAV	CCTTC	1 cut(s)	1138
HpyCH4III	ACNGT	6 cut(s)	19, 42, 103, 113, 212, 478
HpyCH4IV	ACGT	2 cut(s)	277, 990
HpyCH4V	TGCA	3 cut(s)	761, 866, 1187
HpyF10VI	GCNNNNNNNGC	2 cut(s)	863, 1184
HpyF3I	CTNAG	4 cut(s)	77, 684, 838, 1134
HpySE526I	ACGT	2 cut(s)	277, 990
Hsp92II	CATG	2 cut(s)	729, 1102
Kpn2I	TCCGGA	1 cut(s)	949
KpnI	GGTACC	1 cut(s)	477
Ksp22I	TGATCA	1 cut(s)	898
LmnI	GCTCC	3 cut(s)	764, 1102, 1246
Lsp1109I	GCAGC	3 cut(s)	175, 800, 1253
LweI	GCATC	1 cut(s)	1120
MaeI	CTAG	4 cut(s)	533, 920, 966, 1076
MaeII	ACGT	2 cut(s)	277, 990
MaeIII	GTNAC	3 cut(s)	273, 986, 1048
MbiI	CCGCTC	1 cut(s)	179
MboII	GAAGA	6 cut(s)	18, 20, 43, 169, 304, 357
MflI	RGATCY	5 cut(s)	10, 23, 33, 94, 946
MhlI	GDGCHC	2 cut(s)	769, 1023
MluI	ACGCGT	1 cut(s)	734
MlyI	GAGTC	1 cut(s)	237
MmeI	TCCRAC	5 cut(s)	24, 38, 61, 122, 220
MroI	TCCGGA	1 cut(s)	949
MroXI	GAANNNNTTC	1 cut(s)	679
MseI	TTAA	8 cut(s)	378, 393, 438, 564, 591, 609, 650, 1199
MslI	CAYNNNNRTG	2 cut(s)	600, 705
MspA1I	CMGCKG	2 cut(s)	166, 1244
MspI	CCGG	1 cut(s)	950
MvnI	CGCG	1 cut(s)	736
MwoI	GCNNNNNNNGC	2 cut(s)	863, 1184
NcoI	CCATGG	1 cut(s)	1098
NlaIII	CATG	2 cut(s)	729, 1102
NlaIV	GGNNCC	2 cut(s)	96, 475
NmeAIII	GCCGAG	1 cut(s)	764
NmuCI	GTSAC	2 cut(s)	986, 1048
NspV	TTCGAA	1 cut(s)	29
PdmI	GAANNNNTTC	1 cut(s)	679
PfeI	GAWTC	3 cut(s)	202, 577, 1216
PflFI	GACNNNGTC	1 cut(s)	1054
PkrI	GCNGC	3 cut(s)	165, 790, 1243
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
Ppu21I	YACGTR	1 cut(s)	278
PshBI	ATTAAT	1 cut(s)	564
PsiI	TTATAA	1 cut(s)	327
Psp124BI	GAGCTC	2 cut(s)	769, 1023
PspN4I	GGNNCC	2 cut(s)	96, 475
PstNI	CAGNNNCTG	2 cut(s)	893, 1046
PsuI	RGATCY	5 cut(s)	10, 23, 33, 94, 946
PsyI	GACNNNGTC	1 cut(s)	1054
RsaI	GTAC	4 cut(s)	226, 475, 924, 956
RsaNI	GTAC	4 cut(s)	225, 474, 923, 955
RseI	CAYNNNNRTG	2 cut(s)	600, 705
SacI	GAGCTC	2 cut(s)	769, 1023
SaqAI	TTAA	8 cut(s)	378, 393, 438, 564, 591, 609, 650, 1199
SatI	GCNGC	3 cut(s)	164, 789, 1242
ScaI	AGTACT	1 cut(s)	956
SchI	GAGTC	1 cut(s)	237
SduI	GDGCHC	2 cut(s)	769, 1023
SfaNI	GCATC	1 cut(s)	1120
SfcI	CTRYAG	1 cut(s)	189
SfuI	TTCGAA	1 cut(s)	29
SmiMI	CAYNNNNRTG	2 cut(s)	600, 705
SnaBI	TACGTA	1 cut(s)	278
SpeI	ACTAGT	1 cut(s)	919
SsiI	CCGC	5 cut(s)	166, 179, 221, 515, 1244
SspMI	CTAG	4 cut(s)	533, 920, 966, 1076
SstI	GAGCTC	2 cut(s)	769, 1023
StyI	CCWWGG	3 cut(s)	119, 469, 1098
TaaI	ACNGT	6 cut(s)	19, 42, 103, 113, 212, 478
TaiI	ACGT	2 cut(s)	280, 993
TaqI	TCGA	3 cut(s)	29, 175, 1128
TaqII	GACCGA	1 cut(s)	650
TatI	WGTACW	2 cut(s)	922, 954
TfiI	GAWTC	3 cut(s)	202, 577, 1216
Tru1I	TTAA	8 cut(s)	378, 393, 438, 564, 591, 609, 650, 1199
Tru9I	TTAA	8 cut(s)	378, 393, 438, 564, 591, 609, 650, 1199
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	2 cut(s)	986, 1048
TseI	GCWGC	3 cut(s)	163, 788, 1241
Tsp45I	GTSAC	2 cut(s)	986, 1048
TspDTI	ATGAA	6 cut(s)	550, 582, 672, 683, 1157, 1244
TspGWI	ACGGA	2 cut(s)	77, 942
TspRI	CASTG	1 cut(s)	238
Tth111I	GACNNNGTC	1 cut(s)	1054
VspI	ATTAAT	1 cut(s)	564
XapI	RAATTY	4 cut(s)	320, 450, 659, 1201
XmiI	GTMKAC	2 cut(s)	444, 824
XmnI	GAANNNNTTC	1 cut(s)	679
XspI	CTAG	4 cut(s)	533, 920, 966, 1076
ZrmI	AGTACT	1 cut(s)	956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.