Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009728

Physical Location & Seq

Genomic Coordinates Forward (+)

17827189 .. 17830150

Gene Structure 2962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G120900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGAGCACCAAGCCACGCCGCCGATCCAAATTCAGATGGGCAACAATGGCGATATGCTCTGTCGACGCCAATGGTGACGGCAAGATCTCCGTCTCCGAGCTCGGCAACGTGCTCAAGGCCCTCGGCTCCAGCGTCTCTGCCGATGAGCTTCAGCGTGTCATGGGCGATCGCGACACCGACTGCGACGGCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

65

Amino Acids

6.86

Weight (kDa)

7.79

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009728)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G120900_v2.0.a1
rosa_multiflora	Rmu_co8404669.1_g000001 Rmu_sc0000408.1_g000003 Rmu_sc0000953.1_g000019 Rmu_sc0001010.1_g000054 Rmu_sc0001753.1_g000027 Rmu_sc0003722.1_g000055 Rmu_sc0006460.1_g000015 Rmu_sc0007652.1_g000001 Rmu_sc0011579.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131680
rosa_samantha	Rh1BG331000 Rh1CG345100 Rh1DG362400 Rh2CG012500 Rh3DG360200 Rh4AG205800 Rh4DG228400 Rh5CG327900 Rh7AG067100 Rh7CG080800 Rh7DG081400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	188
AccI	GTMKAC	1 cut(s)	63
AccII	CGCG	1 cut(s)	171
AciI	CCGC	1 cut(s)	19
AclWI	GGATC	1 cut(s)	18
AcsI	RAATTY	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	134
AcyI	GRCGYC	2 cut(s)	66, 189
AluBI	AGCT	2 cut(s)	100, 148
AluI	AGCT	2 cut(s)	100, 148
Alw21I	GWGCWC	3 cut(s)	8, 102, 114
Alw26I	GTCTC	2 cut(s)	97, 139
AlwI	GGATC	1 cut(s)	18
AoxI	GGCC	1 cut(s)	117
ApoI	RAATTY	1 cut(s)	29
AsiSI	GCGATCGC	1 cut(s)	169
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	3 cut(s)	8, 102, 114
BccI	CCATC	1 cut(s)	30
BceAI	ACGGC	1 cut(s)	94
BcoDI	GTCTC	2 cut(s)	97, 139
BfoI	RGCGCY	1 cut(s)	192
BglII	AGATCT	1 cut(s)	84
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	2 cut(s)	127, 190
BpmI	CTGGAG	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	98
BsaHI	GRCGYC	2 cut(s)	66, 189
BsaJI	CCNNGG	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	171
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	1 cut(s)	119
BshNI	GGYRCC	1 cut(s)	188
BsiEI	CGRYCG	1 cut(s)	169
BsiHKAI	GWGCWC	3 cut(s)	8, 102, 114
BsmAI	GTCTC	2 cut(s)	97, 139
BsmBI	CGTCTC	2 cut(s)	97, 139
BsnI	GGCC	1 cut(s)	119
Bsp1286I	GDGCHC	3 cut(s)	8, 102, 114
Bsp143I	GATC	3 cut(s)	23, 84, 166
Bsp68I	TCGCGA	1 cut(s)	171
BspACI	CCGC	1 cut(s)	19
BspANI	GGCC	1 cut(s)	119
BspFNI	CGCG	1 cut(s)	171
BspLI	GGNNCC	2 cut(s)	127, 190
BspPI	GGATC	1 cut(s)	18
BspT107I	GGYRCC	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	3 cut(s)	23, 84, 166
BssNI	GRCGYC	2 cut(s)	66, 189
BstACI	GRCGYC	2 cut(s)	66, 189
BstFNI	CGCG	1 cut(s)	171
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	3 cut(s)	26, 87, 169
BstMAI	GTCTC	2 cut(s)	97, 139
BstMBI	GATC	3 cut(s)	23, 84, 166
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstUI	CGCG	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	119
BtuMI	TCGCGA	1 cut(s)	171
CfoI	GCGC	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	118
CseI	GACGC	2 cut(s)	74, 121
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	5 cut(s)	13, 100, 119, 126, 148
CviKI_1	RGCY	5 cut(s)	13, 100, 119, 126, 148
DinI	GGCGCC	1 cut(s)	190
DpnI	GATC	3 cut(s)	25, 86, 168
DpnII	GATC	3 cut(s)	23, 84, 166
Ecl136II	GAGCTC	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	100
EcoO109I	RGGNCCY	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	102
EgeI	GGCGCC	1 cut(s)	190
EheI	GGCGCC	1 cut(s)	190
Esp3I	CGTCTC	2 cut(s)	97, 139
FaeI	CATG	1 cut(s)	163
FaiI	YATR	2 cut(s)	55, 161
FatI	CATG	1 cut(s)	159
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	1 cut(s)	19
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	19
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	112
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	119
HgaI	GACGC	2 cut(s)	74, 121
HhaI	GCGC	1 cut(s)	191
Hin1I	GRCGYC	2 cut(s)	66, 189
Hin1II	CATG	1 cut(s)	163
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	35, 97
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	2 cut(s)	68, 188
HpyCH4IV	ACGT	1 cut(s)	108
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	108
Hsp92I	GRCGYC	2 cut(s)	66, 189
Hsp92II	CATG	1 cut(s)	163
HspAI	GCGC	1 cut(s)	189
KasI	GGCGCC	1 cut(s)	188
Kzo9I	GATC	3 cut(s)	23, 84, 166
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	1 cut(s)	142
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	3 cut(s)	25, 86, 168
MboI	GATC	3 cut(s)	23, 84, 166
MflI	RGATCY	1 cut(s)	84
MhlI	GDGCHC	3 cut(s)	8, 102, 114
MluCI	AATT	1 cut(s)	29
Mly113I	GGCGCC	1 cut(s)	189
MnlI	CCTC	1 cut(s)	131
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	47
NarI	GGCGCC	1 cut(s)	189
NdeII	GATC	3 cut(s)	23, 84, 166
NlaIII	CATG	1 cut(s)	163
NlaIV	GGNNCC	2 cut(s)	127, 190
NmeAIII	GCCGAG	2 cut(s)	81, 102
NmuCI	GTSAC	1 cut(s)	74
NruI	TCGCGA	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PkrI	GCNGC	1 cut(s)	20
Ple19I	CGATCG	1 cut(s)	169
PluTI	GGCGCC	1 cut(s)	192
Psp124BI	GAGCTC	1 cut(s)	102
PspN4I	GGNNCC	2 cut(s)	127, 190
PspPI	GGNCC	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	84
PvuI	CGATCG	1 cut(s)	169
RgaI	GCGATCGC	1 cut(s)	169
RruI	TCGCGA	1 cut(s)	171
SacI	GAGCTC	1 cut(s)	102
SalI	GTCGAC	1 cut(s)	62
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	3 cut(s)	23, 84, 166
Sau96I	GGNCC	1 cut(s)	118
SduI	GDGCHC	3 cut(s)	8, 102, 114
SetI	ASST	3 cut(s)	102, 111, 150
SfaAI	GCGATCGC	1 cut(s)	169
SfoI	GGCGCC	1 cut(s)	190
SgfI	GCGATCGC	1 cut(s)	169
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	1 cut(s)	29
SsiI	CCGC	1 cut(s)	19
SspDI	GGCGCC	1 cut(s)	188
SstI	GAGCTC	1 cut(s)	102
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	1 cut(s)	63
TasI	AATT	1 cut(s)	29
TauI	GCSGC	1 cut(s)	21
TseFI	GTSAC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	74
TspGWI	ACGGA	1 cut(s)	79
XapI	RAATTY	1 cut(s)	29
XmiI	GTMKAC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.