Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0009728

Physical Location & Seq

Genomic Coordinates Reverse (-)

49328670 .. 49332523

Gene Structure 3854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG205800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCAAAGGAGGGTGGCGACGGTTGTTCGGTGGAGTGGGATCCTAGTGGAAGCCTGAGAAGTGTGGATCAGCTCCTACTCCGATTGGATCATCTGAGCCCAACACAGCTTATTTGTAGGTCTGCGTTTGGTGGAGTTTTCGTTGGTGCAAGCGGTGATCTCCAGCGTCGGCACAACAGGCGAATTGGTTCGCCGACTCCAAAGTCCAAAGGCCAAACCCGTCGTGACCGACGACTTGACGAGGTCCACCGCGTCTTCAAGAGGTTCGACTCCAACGGCGACTGCAAGATCTCAACCTCGGAGCTCGGCAACATCCTCAAGGCCCTCTGCTCCAACGTCCCTGAGGACGAGCTCCAGCGCGTGATGGTCGACCTCGGTGGTCCACTGAGATCGTCGGCGACGGAGAACTTCTGGAGGGAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

141

Amino Acids

15.69

Weight (kDa)

8.83

Isoelectric Point (pI)

65.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_6	PF13405	82 - 109	5e-06	EF-hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009728)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G120900_v2.0.a1
rosa_multiflora	Rmu_co8404669.1_g000001 Rmu_sc0000408.1_g000003 Rmu_sc0000953.1_g000019 Rmu_sc0001010.1_g000054 Rmu_sc0001753.1_g000027 Rmu_sc0003722.1_g000055 Rmu_sc0006460.1_g000015 Rmu_sc0007652.1_g000001 Rmu_sc0011579.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131680
rosa_samantha	Rh1BG331000 Rh1CG345100 Rh1DG362400 Rh2CG012500 Rh3DG360200 Rh4AG205800 Rh4DG228400 Rh5CG327900 Rh7AG067100 Rh7CG080800 Rh7DG081400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	202
AccI	GTMKAC	1 cut(s)	369
AccII	CGCG	2 cut(s)	252, 360
AciI	CCGC	2 cut(s)	153, 250
AclWI	GGATC	4 cut(s)	35, 48, 75, 96
AgsI	TTSAA	1 cut(s)	259
AluBI	AGCT	4 cut(s)	73, 109, 304, 352
AluI	AGCT	4 cut(s)	73, 109, 304, 352
Alw21I	GWGCWC	2 cut(s)	306, 354
AlwI	GGATC	4 cut(s)	35, 48, 75, 96
AoxI	GGCC	2 cut(s)	211, 321
Asp700I	GAANNNNTTC	1 cut(s)	187
AspLEI	GCGC	1 cut(s)	360
AspS9I	GGNCC	3 cut(s)	244, 322, 380
AsuHPI	GGTGA	1 cut(s)	167
AvaII	GGWCC	2 cut(s)	244, 380
AxyI	CCTNAGG	1 cut(s)	342
BamHI	GGATCC	1 cut(s)	40
BanII	GRGCYC	3 cut(s)	101, 306, 354
BbsI	GAAGAC	1 cut(s)	247
Bbv12I	GWGCWC	2 cut(s)	306, 354
BccI	CCATC	1 cut(s)	358
BceAI	ACGGC	1 cut(s)	292
BfaI	CTAG	1 cut(s)	45
BglII	AGATCT	1 cut(s)	288
Bme18I	GGWCC	2 cut(s)	244, 380
BmgT120I	GGNCC	3 cut(s)	244, 322, 380
BmiI	GGNNCC	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	247
BpmI	CTGGAG	2 cut(s)	146, 338
BpuEI	CTTGAG	1 cut(s)	302
BsaJI	CCNNGG	2 cut(s)	297, 373
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bse21I	CCTNAGG	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	297, 373
BseGI	GGATG	1 cut(s)	312
BseMII	CTCAG	4 cut(s)	47, 86, 333, 377
Bsh1236I	CGCG	2 cut(s)	252, 360
BshFI	GGCC	2 cut(s)	213, 323
BsiHKAI	GWGCWC	2 cut(s)	306, 354
BslFI	GGGAC	1 cut(s)	323
BsmFI	GGGAC	1 cut(s)	323
BsnI	GGCC	2 cut(s)	213, 323
Bsp1286I	GDGCHC	3 cut(s)	101, 306, 354
Bsp143I	GATC	6 cut(s)	40, 67, 88, 157, 288, 389
BspACI	CCGC	2 cut(s)	153, 250
BspANI	GGCC	2 cut(s)	213, 323
BspCNI	CTCAG	4 cut(s)	48, 87, 334, 378
BspFNI	CGCG	2 cut(s)	252, 360
BspLI	GGNNCC	1 cut(s)	42
BspPI	GGATC	4 cut(s)	35, 48, 75, 96
BssECI	CCNNGG	2 cut(s)	297, 373
BssMI	GATC	6 cut(s)	40, 67, 88, 157, 288, 389
Bst4CI	ACNGT	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	4 cut(s)	56, 95, 342, 386
BstF5I	GGATG	1 cut(s)	312
BstFNI	CGCG	2 cut(s)	252, 360
BstHHI	GCGC	1 cut(s)	360
BstKTI	GATC	6 cut(s)	43, 70, 91, 160, 291, 392
BstMBI	GATC	6 cut(s)	40, 67, 88, 157, 288, 389
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstUI	CGCG	2 cut(s)	252, 360
BstV2I	GAAGAC	1 cut(s)	247
BstX2I	RGATCY	2 cut(s)	40, 288
BstYI	RGATCY	2 cut(s)	40, 288
Bsu36I	CCTNAGG	1 cut(s)	342
BsuRI	GGCC	2 cut(s)	213, 323
BtsCI	GGATG	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	383
Cac8I	GCNNGC	1 cut(s)	151
CfoI	GCGC	1 cut(s)	360
Cfr13I	GGNCC	3 cut(s)	244, 322, 380
CseI	GACGC	2 cut(s)	155, 241
CviJI	RGCY	8 cut(s)	54, 73, 99, 109, 213, 304, 323, 352
CviKI_1	RGCY	8 cut(s)	54, 73, 99, 109, 213, 304, 323, 352
DdeI	CTNAG	4 cut(s)	56, 95, 342, 386
DpnI	GATC	6 cut(s)	42, 69, 90, 159, 290, 391
DpnII	GATC	6 cut(s)	40, 67, 88, 157, 288, 389
DrdI	GACNNNNNNGTC	1 cut(s)	202
DseDI	GACNNNNNNGTC	1 cut(s)	202
Ecl136II	GAGCTC	2 cut(s)	304, 352
Eco24I	GRGCYC	3 cut(s)	101, 306, 354
Eco47I	GGWCC	2 cut(s)	244, 380
Eco53kI	GAGCTC	2 cut(s)	304, 352
Eco81I	CCTNAGG	1 cut(s)	342
EcoICRI	GAGCTC	2 cut(s)	304, 352
EcoO109I	RGGNCCY	1 cut(s)	322
EcoT38I	GRGCYC	3 cut(s)	101, 306, 354
FaqI	GGGAC	1 cut(s)	323
FblI	GTMKAC	1 cut(s)	369
FokI	GGATG	1 cut(s)	299
FriOI	GRGCYC	3 cut(s)	101, 306, 354
FspBI	CTAG	1 cut(s)	45
GlaI	GCGC	1 cut(s)	359
GsuI	CTGGAG	2 cut(s)	146, 338
HaeIII	GGCC	2 cut(s)	213, 323
HgaI	GACGC	2 cut(s)	155, 241
HhaI	GCGC	1 cut(s)	360
Hin6I	GCGC	1 cut(s)	358
HinP1I	GCGC	1 cut(s)	358
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	2 cut(s)	196, 269
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	3 cut(s)	247, 370, 383
Hpy188I	TCNGA	3 cut(s)	83, 96, 301
Hpy188III	TCNNGA	3 cut(s)	224, 259, 412
Hpy8I	GTNNAC	3 cut(s)	247, 370, 383
Hpy99I	CGWCG	6 cut(s)	23, 171, 225, 234, 397, 403
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	2 cut(s)	149, 285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	4 cut(s)	56, 95, 342, 386
HpySE526I	ACGT	1 cut(s)	336
HspAI	GCGC	1 cut(s)	358
Kzo9I	GATC	6 cut(s)	40, 67, 88, 157, 288, 389
LmnI	GCTCC	4 cut(s)	78, 301, 335, 357
LpnPI	CCDG	6 cut(s)	68, 163, 176, 354, 368, 397
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	6 cut(s)	42, 69, 90, 159, 290, 391
MboI	GATC	6 cut(s)	40, 67, 88, 157, 288, 389
MboII	GAAGA	1 cut(s)	247
MflI	RGATCY	2 cut(s)	40, 288
MhlI	GDGCHC	3 cut(s)	101, 306, 354
MluCI	AATT	1 cut(s)	183
MlyI	GAGTC	2 cut(s)	190, 263
MmeI	TCCRAC	2 cut(s)	297, 357
MnlI	CCTC	9 cut(s)	4, 235, 255, 307, 326, 335, 337, 383, 408
MroXI	GAANNNNTTC	1 cut(s)	187
MvnI	CGCG	2 cut(s)	252, 360
MwoI	GCNNNNNNNGC	1 cut(s)	178
NdeII	GATC	6 cut(s)	40, 67, 88, 157, 288, 389
NlaIV	GGNNCC	1 cut(s)	42
NmeAIII	GCCGAG	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	1 cut(s)	229
PdmI	GAANNNNTTC	1 cut(s)	187
PflFI	GACNNNGTC	1 cut(s)	242
PleI	GAGTC	2 cut(s)	190, 263
PpsI	GAGTC	2 cut(s)	190, 263
Psp124BI	GAGCTC	2 cut(s)	306, 354
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	3 cut(s)	244, 322, 380
PsuI	RGATCY	2 cut(s)	40, 288
PsyI	GACNNNGTC	1 cut(s)	242
SacI	GAGCTC	2 cut(s)	306, 354
SalI	GTCGAC	1 cut(s)	368
Sau3AI	GATC	6 cut(s)	40, 67, 88, 157, 288, 389
Sau96I	GGNCC	3 cut(s)	244, 322, 380
SchI	GAGTC	2 cut(s)	190, 263
SduI	GDGCHC	3 cut(s)	101, 306, 354
SinI	GGWCC	2 cut(s)	244, 380
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	1 cut(s)	183
SsiI	CCGC	2 cut(s)	153, 250
SspMI	CTAG	1 cut(s)	45
SstI	GAGCTC	2 cut(s)	306, 354
TaaI	ACNGT	1 cut(s)	23
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	2 cut(s)	267, 369
TaqII	GACCGA	1 cut(s)	243
TasI	AATT	1 cut(s)	183
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	224
TspGWI	ACGGA	1 cut(s)	416
TspRI	CASTG	1 cut(s)	390
Tth111I	GACNNNGTC	1 cut(s)	242
VpaK11BI	GGWCC	2 cut(s)	244, 380
XmiI	GTMKAC	1 cut(s)	369
XmnI	GAANNNNTTC	1 cut(s)	187
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.