Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009728

Physical Location & Seq

Genomic Coordinates Forward (+)

997036 .. 997760

Gene Structure 725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG012500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGATAACACAAGAGAATAAGAAATTCAATAGGAGAATAAGAAGACATTCAGATTCAGTTATAATCTGCCTCAAATTAACACAAGAGATTGCAGAACCAACCAAACTTCAATGGAAAAAATTAATTTGCCACCAGTCGCCGACTCCAAAGTCCAAAGTCCAAACCCGTCGTGACCGACAACTCGACGAGGTCCACCGCGTCTTCAAGAGGTTCGACTCCAACGGCGACTGCAAGATCTCAACCTCAAAGCTCGGCAACATCCTCAAGGCCCTCGGCTCCAACGTCCCTGAGGACGAGCTCCAACGCGTGATGGTCAACCTCGGTGGTCCACTGAGATCGTCGGCGACGACGAACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

119

Amino Acids

13.7

Weight (kDa)

10.15

Isoelectric Point (pI)

64.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009728)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G120900_v2.0.a1
rosa_multiflora	Rmu_co8404669.1_g000001 Rmu_sc0000408.1_g000003 Rmu_sc0000953.1_g000019 Rmu_sc0001010.1_g000054 Rmu_sc0001753.1_g000027 Rmu_sc0003722.1_g000055 Rmu_sc0006460.1_g000015 Rmu_sc0007652.1_g000001 Rmu_sc0011579.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131680
rosa_samantha	Rh1BG331000 Rh1CG345100 Rh1DG362400 Rh2CG012500 Rh3DG360200 Rh4AG205800 Rh4DG228400 Rh5CG327900 Rh7AG067100 Rh7CG080800 Rh7DG081400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	62
AasI	GACNNNNNNGTC	1 cut(s)	148
AccII	CGCG	2 cut(s)	198, 306
AciI	CCGC	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	23
AflIII	ACRYGT	1 cut(s)	304
AgsI	TTSAA	3 cut(s)	28, 110, 205
AluBI	AGCT	2 cut(s)	250, 298
AluI	AGCT	2 cut(s)	250, 298
Alw21I	GWGCWC	1 cut(s)	300
AoxI	GGCC	1 cut(s)	267
ApoI	RAATTY	1 cut(s)	23
AseI	ATTAAT	1 cut(s)	122
Asp700I	GAANNNNTTC	1 cut(s)	46
AspS9I	GGNCC	3 cut(s)	190, 268, 326
AvaII	GGWCC	2 cut(s)	190, 326
AxyI	CCTNAGG	1 cut(s)	288
BanII	GRGCYC	1 cut(s)	300
BbsI	GAAGAC	2 cut(s)	49, 193
Bbv12I	GWGCWC	1 cut(s)	300
BccI	CCATC	1 cut(s)	304
BceAI	ACGGC	1 cut(s)	238
BglII	AGATCT	1 cut(s)	234
Bme18I	GGWCC	2 cut(s)	190, 326
BmgT120I	GGNCC	3 cut(s)	190, 268, 326
BmiI	GGNNCC	1 cut(s)	277
BpiI	GAAGAC	2 cut(s)	49, 193
BpuEI	CTTGAG	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	271, 319
Bse1I	ACTGG	1 cut(s)	133
Bse21I	CCTNAGG	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	271, 319
BseGI	GGATG	1 cut(s)	258
BseMII	CTCAG	2 cut(s)	279, 323
BseNI	ACTGG	1 cut(s)	133
Bsh1236I	CGCG	2 cut(s)	198, 306
BshFI	GGCC	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	300
BslFI	GGGAC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	2 cut(s)	234, 335
BspACI	CCGC	1 cut(s)	196
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	2 cut(s)	280, 324
BspFNI	CGCG	2 cut(s)	198, 306
BspLI	GGNNCC	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	2 cut(s)	271, 319
BssMI	GATC	2 cut(s)	234, 335
BstDEI	CTNAG	2 cut(s)	288, 332
BstF5I	GGATG	1 cut(s)	258
BstFNI	CGCG	2 cut(s)	198, 306
BstKTI	GATC	2 cut(s)	237, 338
BstMBI	GATC	2 cut(s)	234, 335
BstUI	CGCG	2 cut(s)	198, 306
BstV2I	GAAGAC	2 cut(s)	49, 193
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
Bsu36I	CCTNAGG	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	329
Cfr13I	GGNCC	3 cut(s)	190, 268, 326
CseI	GACGC	1 cut(s)	187
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviJI	RGCY	4 cut(s)	250, 269, 276, 298
CviKI_1	RGCY	4 cut(s)	250, 269, 276, 298
DdeI	CTNAG	2 cut(s)	288, 332
DpnI	GATC	2 cut(s)	236, 337
DpnII	GATC	2 cut(s)	234, 335
DrdI	GACNNNNNNGTC	1 cut(s)	148
DseDI	GACNNNNNNGTC	1 cut(s)	148
Ecl136II	GAGCTC	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	300
Eco47I	GGWCC	2 cut(s)	190, 326
Eco53kI	GAGCTC	1 cut(s)	298
Eco81I	CCTNAGG	1 cut(s)	288
EcoICRI	GAGCTC	1 cut(s)	298
EcoO109I	RGGNCCY	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	300
FaiI	YATR	1 cut(s)	62
FaqI	GGGAC	1 cut(s)	269
FokI	GGATG	1 cut(s)	245
FriOI	GRGCYC	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	269
HgaI	GACGC	1 cut(s)	187
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	3 cut(s)	53, 142, 215
Hpy166II	GTNNAC	3 cut(s)	193, 316, 329
Hpy188I	TCNGA	2 cut(s)	52, 359
Hpy188III	TCNNGA	2 cut(s)	170, 205
Hpy8I	GTNNAC	3 cut(s)	193, 316, 329
Hpy99I	CGWCG	5 cut(s)	171, 188, 343, 349, 352
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	2 cut(s)	92, 231
HpyF3I	CTNAG	2 cut(s)	288, 332
HpySE526I	ACGT	1 cut(s)	282
Kzo9I	GATC	2 cut(s)	234, 335
LmnI	GCTCC	2 cut(s)	281, 303
LpnPI	CCDG	2 cut(s)	146, 300
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	2 cut(s)	236, 337
MboI	GATC	2 cut(s)	234, 335
MboII	GAAGA	2 cut(s)	54, 193
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	4 cut(s)	23, 74, 119, 123
MluI	ACGCGT	1 cut(s)	304
MlyI	GAGTC	2 cut(s)	136, 209
MmeI	TCCRAC	3 cut(s)	243, 303, 325
MnlI	CCTC	8 cut(s)	80, 181, 201, 253, 272, 281, 283, 329
MroXI	GAANNNNTTC	1 cut(s)	46
MseI	TTAA	2 cut(s)	77, 122
MvnI	CGCG	2 cut(s)	198, 306
NdeII	GATC	2 cut(s)	234, 335
NlaIV	GGNNCC	1 cut(s)	277
NmeAIII	GCCGAG	2 cut(s)	231, 252
NmuCI	GTSAC	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	3 cut(s)	279, 344, 347
PdmI	GAANNNNTTC	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	53
PflFI	GACNNNGTC	1 cut(s)	188
PleI	GAGTC	2 cut(s)	136, 209
PpsI	GAGTC	2 cut(s)	136, 209
PshBI	ATTAAT	1 cut(s)	122
PsiI	TTATAA	1 cut(s)	62
Psp124BI	GAGCTC	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	3 cut(s)	190, 268, 326
PsuI	RGATCY	1 cut(s)	234
PsyI	GACNNNGTC	1 cut(s)	188
SacI	GAGCTC	1 cut(s)	300
SaqAI	TTAA	2 cut(s)	77, 122
Sau3AI	GATC	2 cut(s)	234, 335
Sau96I	GGNCC	3 cut(s)	190, 268, 326
SchI	GAGTC	2 cut(s)	136, 209
SduI	GDGCHC	1 cut(s)	300
SetI	ASST	7 cut(s)	192, 212, 245, 252, 285, 300, 321
SinI	GGWCC	2 cut(s)	190, 326
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	4 cut(s)	23, 74, 119, 123
SsiI	CCGC	1 cut(s)	196
SstI	GAGCTC	1 cut(s)	300
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	2 cut(s)	183, 213
TaqII	GACCGA	1 cut(s)	189
TasI	AATT	4 cut(s)	23, 74, 119, 123
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	2 cut(s)	77, 122
Tru9I	TTAA	2 cut(s)	77, 122
TscAI	CASTG	1 cut(s)	336
TseFI	GTSAC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	170
TspRI	CASTG	1 cut(s)	336
Tth111I	GACNNNGTC	1 cut(s)	188
VpaK11BI	GGWCC	2 cut(s)	190, 326
VspI	ATTAAT	1 cut(s)	122
XapI	RAATTY	1 cut(s)	23
XmnI	GAANNNNTTC	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.