Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000953.1

Orthogroup ID

OG0009728

Physical Location & Seq

Genomic Coordinates Reverse (-)

99039 .. 99305

Gene Structure 267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000953.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

atggaaaaaattaatctggcaccagtagccaactccaaagtccaaacccgtcgtgaccgactactcgacgaggtccaccgcgtcttgaagagcttcgactccaacggcgaccgcaagatctcaacctcggagcttagcaacgtccttaaggccctcggctccaacgtccctgaggacgagctccagcgcatgatggttgacctcggtggtcaacctagaaagtctctgagatcgttggcgacagcgaacttctggagggagatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

88

Amino Acids

9.98

Weight (kDa)

9.69

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009728)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G120900_v2.0.a1
rosa_multiflora	Rmu_co8404669.1_g000001 Rmu_sc0000408.1_g000003 Rmu_sc0000953.1_g000019 Rmu_sc0001010.1_g000054 Rmu_sc0001753.1_g000027 Rmu_sc0003722.1_g000055 Rmu_sc0006460.1_g000015 Rmu_sc0007652.1_g000001 Rmu_sc0011579.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131680
rosa_samantha	Rh1BG331000 Rh1CG345100 Rh1DG362400 Rh2CG012500 Rh3DG360200 Rh4AG205800 Rh4DG228400 Rh5CG327900 Rh7AG067100 Rh7CG080800 Rh7DG081400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AccII	CGCG	1 cut(s)	81
AciI	CCGC	2 cut(s)	79, 112
AflII	CTTAAG	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	88
AluBI	AGCT	3 cut(s)	93, 133, 181
AluI	AGCT	3 cut(s)	93, 133, 181
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	1 cut(s)	228
AoxI	GGCC	1 cut(s)	150
AseI	ATTAAT	1 cut(s)	12
Asp700I	GAANNNNTTC	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	2 cut(s)	73, 151
AvaII	GGWCC	1 cut(s)	73
AxyI	CCTNAGG	1 cut(s)	171
BanI	GGYRCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	183
BccI	CCATC	1 cut(s)	187
BceAI	ACGGC	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	1 cut(s)	216
BfrI	CTTAAG	1 cut(s)	146
BglII	AGATCT	1 cut(s)	117
BlpI	GCTNAGC	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	2 cut(s)	73, 151
BmiI	GGNNCC	2 cut(s)	21, 160
BpmI	CTGGAG	1 cut(s)	167
Bpu1102I	GCTNAGC	1 cut(s)	134
BsaJI	CCNNGG	3 cut(s)	126, 154, 202
Bse1I	ACTGG	1 cut(s)	23
Bse21I	CCTNAGG	1 cut(s)	171
BseDI	CCNNGG	3 cut(s)	126, 154, 202
BseMII	CTCAG	2 cut(s)	162, 218
BseNI	ACTGG	1 cut(s)	23
Bsh1236I	CGCG	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	1 cut(s)	152
BshNI	GGYRCC	1 cut(s)	19
BsiEI	CGRYCG	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	2 cut(s)	117, 230
Bsp1720I	GCTNAGC	1 cut(s)	134
BspACI	CCGC	2 cut(s)	79, 112
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	2 cut(s)	163, 219
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	21, 160
BspQI	GCTCTTC	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	19
BspTI	CTTAAG	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	3 cut(s)	126, 154, 202
BssMI	GATC	2 cut(s)	117, 230
Bst6I	CTCTTC	1 cut(s)	83
BstAFI	CTTAAG	1 cut(s)	146
BstDEI	CTNAG	3 cut(s)	134, 171, 227
BstFNI	CGCG	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	2 cut(s)	120, 233
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	2 cut(s)	117, 230
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstUI	CGCG	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
Bsu36I	CCTNAGG	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	152
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	2 cut(s)	73, 151
CseI	GACGC	1 cut(s)	70
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	6 cut(s)	29, 93, 133, 152, 159, 181
CviKI_1	RGCY	6 cut(s)	29, 93, 133, 152, 159, 181
DdeI	CTNAG	3 cut(s)	134, 171, 227
DpnI	GATC	2 cut(s)	119, 232
DpnII	GATC	2 cut(s)	117, 230
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Ecl136II	GAGCTC	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	73
Eco53kI	GAGCTC	1 cut(s)	181
Eco81I	CCTNAGG	1 cut(s)	171
EcoICRI	GAGCTC	1 cut(s)	181
EcoO109I	RGGNCCY	1 cut(s)	151
EcoT38I	GRGCYC	1 cut(s)	183
FaeI	CATG	1 cut(s)	193
FaiI	YATR	1 cut(s)	191
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	1 cut(s)	189
FriOI	GRGCYC	1 cut(s)	183
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	1 cut(s)	188
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	152
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	193
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HincII	GTYRAC	2 cut(s)	199, 212
HindII	GTYRAC	2 cut(s)	199, 212
HinfI	GANTC	1 cut(s)	98
Hpy166II	GTNNAC	3 cut(s)	76, 199, 212
Hpy188I	TCNGA	2 cut(s)	130, 228
Hpy188III	TCNNGA	3 cut(s)	53, 85, 253
Hpy8I	GTNNAC	3 cut(s)	76, 199, 212
Hpy99I	CGWCG	2 cut(s)	54, 71
HpyCH4IV	ACGT	2 cut(s)	141, 165
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	3 cut(s)	134, 171, 227
HpySE526I	ACGT	2 cut(s)	141, 165
Hsp92II	CATG	1 cut(s)	193
HspAI	GCGC	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	117, 230
LguI	GCTCTTC	1 cut(s)	83
LmnI	GCTCC	3 cut(s)	130, 164, 186
LpnPI	CCDG	5 cut(s)	2, 36, 183, 197, 238
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	2 cut(s)	141, 165
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	2 cut(s)	119, 232
MboI	GATC	2 cut(s)	117, 230
MboII	GAAGA	1 cut(s)	100
MflI	RGATCY	1 cut(s)	117
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	1 cut(s)	9
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	2 cut(s)	126, 186
MnlI	CCTC	6 cut(s)	64, 136, 164, 166, 212, 249
MroXI	GAANNNNTTC	1 cut(s)	92
MseI	TTAA	2 cut(s)	12, 147
MspCI	CTTAAG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeII	GATC	2 cut(s)	117, 230
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	2 cut(s)	21, 160
NmeAIII	GCCGAG	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	53
PciSI	GCTCTTC	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PdmI	GAANNNNTTC	1 cut(s)	92
PflFI	GACNNNGTC	1 cut(s)	71
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PshBI	ATTAAT	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	183
PspN4I	GGNNCC	2 cut(s)	21, 160
PspPI	GGNCC	2 cut(s)	73, 151
PsuI	RGATCY	1 cut(s)	117
PsyI	GACNNNGTC	1 cut(s)	71
SacI	GAGCTC	1 cut(s)	183
SapI	GCTCTTC	1 cut(s)	83
SaqAI	TTAA	2 cut(s)	12, 147
Sau3AI	GATC	2 cut(s)	117, 230
Sau96I	GGNCC	2 cut(s)	73, 151
SchI	GAGTC	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	9 cut(s)	75, 95, 128, 135, 144, 168, 183, 204, 217
SinI	GGWCC	1 cut(s)	73
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	9
SsiI	CCGC	2 cut(s)	79, 112
SspMI	CTAG	1 cut(s)	216
SstI	GAGCTC	1 cut(s)	183
TaiI	ACGT	2 cut(s)	144, 168
TaqI	TCGA	2 cut(s)	66, 96
TaqII	GACCGA	1 cut(s)	72
TasI	AATT	1 cut(s)	9
Tru1I	TTAA	2 cut(s)	12, 147
Tru9I	TTAA	2 cut(s)	12, 147
TseFI	GTSAC	1 cut(s)	53
Tsp45I	GTSAC	1 cut(s)	53
Tth111I	GACNNNGTC	1 cut(s)	71
Vha464I	CTTAAG	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	73
VspI	ATTAAT	1 cut(s)	12
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.