Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006460.1

Orthogroup ID

OG0009728

Physical Location & Seq

Genomic Coordinates Reverse (-)

60015 .. 60497

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006460.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atggatgattcgctccagtacgagtgtatgaatgaagaaaaccccataaggctgtgggtctcactcgaagaaagatttggcaatgtccatgactccctgcttcctgacctagaagtgagatggcatagcctccgcttatgtgatttcaagtcaactaactccaaagtccaaacccgtcgtgaccgacgactcgacgaggtccatcgcgtcttcaagagcttcgactccaacggcgaccgcaagatctcaacctcagagctcagcaatgtcctcaaggccctcggctccaacgtcctagaggatgagctccagcgcgtgatggtcgacctcggaagtctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

113

Amino Acids

13.21

Weight (kDa)

5.17

Isoelectric Point (pI)

47.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009728)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G120900_v2.0.a1
rosa_multiflora	Rmu_co8404669.1_g000001 Rmu_sc0000408.1_g000003 Rmu_sc0000953.1_g000019 Rmu_sc0001010.1_g000054 Rmu_sc0001753.1_g000027 Rmu_sc0003722.1_g000055 Rmu_sc0006460.1_g000015 Rmu_sc0007652.1_g000001 Rmu_sc0011579.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131680
rosa_samantha	Rh1BG331000 Rh1CG345100 Rh1DG362400 Rh2CG012500 Rh3DG360200 Rh4AG205800 Rh4DG228400 Rh5CG327900 Rh7AG067100 Rh7CG080800 Rh7DG081400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	324
AccII	CGCG	2 cut(s)	207, 315
AciI	CCGC	2 cut(s)	133, 238
AfaI	GTAC	1 cut(s)	20
AgsI	TTSAA	2 cut(s)	148, 214
AjuI	GAANNNNNNNTTGG	2 cut(s)	60, 92
AluBI	AGCT	3 cut(s)	219, 259, 307
AluI	AGCT	3 cut(s)	219, 259, 307
Alw21I	GWGCWC	2 cut(s)	261, 309
Alw26I	GTCTC	1 cut(s)	64
AoxI	GGCC	1 cut(s)	276
AspLEI	GCGC	1 cut(s)	315
AspS9I	GGNCC	2 cut(s)	199, 277
AvaII	GGWCC	1 cut(s)	199
BanII	GRGCYC	2 cut(s)	261, 309
BbsI	GAAGAC	1 cut(s)	202
Bbv12I	GWGCWC	2 cut(s)	261, 309
BccI	CCATC	3 cut(s)	114, 210, 313
BceAI	ACGGC	1 cut(s)	247
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	2 cut(s)	110, 296
BglII	AGATCT	1 cut(s)	243
BlpI	GCTNAGC	1 cut(s)	260
Bme18I	GGWCC	1 cut(s)	199
BmgT120I	GGNCC	2 cut(s)	199, 277
BmiI	GGNNCC	1 cut(s)	286
BpiI	GAAGAC	1 cut(s)	202
BpmI	CTGGAG	1 cut(s)	293
Bpu1102I	GCTNAGC	1 cut(s)	260
BpuEI	CTTGAG	1 cut(s)	257
BsaI	GGTCTC	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	280, 328
Bse1I	ACTGG	1 cut(s)	16
Bse3DI	GCAATG	2 cut(s)	88, 271
BseDI	CCNNGG	2 cut(s)	280, 328
BseGI	GGATG	2 cut(s)	10, 307
BseMI	GCAATG	2 cut(s)	88, 271
BseMII	CTCAG	2 cut(s)	267, 274
BseNI	ACTGG	1 cut(s)	16
Bsh1236I	CGCG	2 cut(s)	207, 315
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	1 cut(s)	278
BsiEI	CGRYCG	1 cut(s)	238
BsiHKAI	GWGCWC	2 cut(s)	261, 309
BsmAI	GTCTC	1 cut(s)	64
BsnI	GGCC	1 cut(s)	278
Bso31I	GGTCTC	1 cut(s)	64
Bsp1286I	GDGCHC	2 cut(s)	261, 309
Bsp143I	GATC	1 cut(s)	243
Bsp1720I	GCTNAGC	1 cut(s)	260
BspACI	CCGC	2 cut(s)	133, 238
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	2 cut(s)	266, 273
BspFNI	CGCG	2 cut(s)	207, 315
BspLI	GGNNCC	1 cut(s)	286
BspTNI	GGTCTC	1 cut(s)	64
BsrDI	GCAATG	2 cut(s)	88, 271
BsrI	ACTGG	1 cut(s)	16
BssECI	CCNNGG	2 cut(s)	280, 328
BssMI	GATC	1 cut(s)	243
BstDEI	CTNAG	2 cut(s)	253, 260
BstF5I	GGATG	2 cut(s)	10, 307
BstFNI	CGCG	2 cut(s)	207, 315
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	1 cut(s)	246
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	243
BstMCI	CGRYCG	1 cut(s)	238
BstUI	CGCG	2 cut(s)	207, 315
BstV2I	GAAGAC	1 cut(s)	202
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	278
BtgZI	GCGATG	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	10, 307
CfoI	GCGC	1 cut(s)	315
Cfr13I	GGNCC	2 cut(s)	199, 277
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	7 cut(s)	52, 129, 219, 259, 278, 285, 307
CviKI_1	RGCY	7 cut(s)	52, 129, 219, 259, 278, 285, 307
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	2 cut(s)	253, 260
DpnI	GATC	1 cut(s)	245
DpnII	GATC	1 cut(s)	243
Ecl136II	GAGCTC	2 cut(s)	259, 307
Eco24I	GRGCYC	2 cut(s)	261, 309
Eco31I	GGTCTC	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	199
Eco53kI	GAGCTC	2 cut(s)	259, 307
EcoICRI	GAGCTC	2 cut(s)	259, 307
EcoO109I	RGGNCCY	1 cut(s)	277
EcoT38I	GRGCYC	2 cut(s)	261, 309
FaeI	CATG	1 cut(s)	92
FaiI	YATR	5 cut(s)	29, 47, 90, 126, 139
FatI	CATG	1 cut(s)	88
FblI	GTMKAC	1 cut(s)	324
FokI	GGATG	2 cut(s)	17, 314
FriOI	GRGCYC	2 cut(s)	261, 309
FspBI	CTAG	2 cut(s)	110, 296
GlaI	GCGC	1 cut(s)	314
GsuI	CTGGAG	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	278
HgaI	GACGC	1 cut(s)	196
HhaI	GCGC	1 cut(s)	315
Hin1II	CATG	1 cut(s)	92
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HincII	GTYRAC	2 cut(s)	153, 325
HindII	GTYRAC	2 cut(s)	153, 325
HinfI	GANTC	4 cut(s)	8, 92, 189, 224
Hpy166II	GTNNAC	2 cut(s)	153, 325
Hpy188I	TCNGA	3 cut(s)	256, 332, 341
Hpy188III	TCNNGA	3 cut(s)	104, 179, 214
Hpy8I	GTNNAC	2 cut(s)	153, 325
Hpy99I	CGWCG	3 cut(s)	180, 189, 197
HpyCH4IV	ACGT	1 cut(s)	291
HpyF3I	CTNAG	2 cut(s)	253, 260
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	1 cut(s)	92
HspAI	GCGC	1 cut(s)	313
Kzo9I	GATC	1 cut(s)	243
LmnI	GCTCC	3 cut(s)	18, 290, 312
LpnPI	CCDG	4 cut(s)	29, 110, 117, 323
MaeI	CTAG	2 cut(s)	110, 296
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	1 cut(s)	245
MboI	GATC	1 cut(s)	243
MboII	GAAGA	3 cut(s)	47, 80, 202
MflI	RGATCY	1 cut(s)	243
MhlI	GDGCHC	2 cut(s)	261, 309
MlyI	GAGTC	3 cut(s)	86, 183, 218
MmeI	TCCRAC	2 cut(s)	252, 312
MnlI	CCTC	7 cut(s)	140, 190, 262, 281, 290, 292, 338
MvnI	CGCG	2 cut(s)	207, 315
NdeII	GATC	1 cut(s)	243
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	1 cut(s)	286
NmeAIII	GCCGAG	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	2 cut(s)	184, 288
PfeI	GAWTC	1 cut(s)	8
PflFI	GACNNNGTC	1 cut(s)	197
PleI	GAGTC	3 cut(s)	86, 183, 218
PpsI	GAGTC	3 cut(s)	86, 183, 218
Psp124BI	GAGCTC	2 cut(s)	261, 309
PspN4I	GGNNCC	1 cut(s)	286
PspPI	GGNCC	2 cut(s)	199, 277
PsuI	RGATCY	1 cut(s)	243
PsyI	GACNNNGTC	1 cut(s)	197
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SacI	GAGCTC	2 cut(s)	261, 309
SalI	GTCGAC	1 cut(s)	323
Sau3AI	GATC	1 cut(s)	243
Sau96I	GGNCC	2 cut(s)	199, 277
SchI	GAGTC	3 cut(s)	86, 183, 218
SduI	GDGCHC	2 cut(s)	261, 309
SetI	ASST	8 cut(s)	111, 201, 221, 254, 261, 294, 309, 330
SinI	GGWCC	1 cut(s)	199
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SsiI	CCGC	2 cut(s)	133, 238
SspMI	CTAG	2 cut(s)	110, 296
SstI	GAGCTC	2 cut(s)	261, 309
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	4 cut(s)	66, 192, 222, 324
TaqII	GACCGA	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	8
TseFI	GTSAC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	44, 48
Tth111I	GACNNNGTC	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	324
XspI	CTAG	2 cut(s)	110, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.