Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0009728

Physical Location & Seq

Genomic Coordinates Forward (+)

46776048 .. 46776299

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG331000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGCATTAACATTCATCAAATCCGTCAGCGTAGTCGAATACCTCGCTGCAATCCCCGCCAGCAAGTCCTCCGGGGTCGCCGACTCCAATGTCCAAACATGTCGTGACCGACGACTCGACGAGGTCCACCGCGTCTTCAAGAGCTTCGACTCCAACGGCGACTGCAAGATCTCAACCTCAGAGCTCGGCAATGTCCTCAAGGCCCTGGGCTCCAACGTCCCCGACGACGAGCTCCGCTGCTCCTCTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

83

Amino Acids

8.91

Weight (kDa)

5.69

Isoelectric Point (pI)

28.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_6	PF13405	42 - 70	9.3e-07	EF-hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009728)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G120900_v2.0.a1
rosa_multiflora	Rmu_co8404669.1_g000001 Rmu_sc0000408.1_g000003 Rmu_sc0000953.1_g000019 Rmu_sc0001010.1_g000054 Rmu_sc0001753.1_g000027 Rmu_sc0003722.1_g000055 Rmu_sc0006460.1_g000015 Rmu_sc0007652.1_g000001 Rmu_sc0011579.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131680
rosa_samantha	Rh1BG331000 Rh1CG345100 Rh1DG362400 Rh2CG012500 Rh3DG360200 Rh4AG205800 Rh4DG228400 Rh5CG327900 Rh7AG067100 Rh7CG080800 Rh7DG081400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
AccII	CGCG	1 cut(s)	132
AciI	CCGC	3 cut(s)	57, 130, 235
AflIII	ACRYGT	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	3 cut(s)	144, 184, 232
AluI	AGCT	3 cut(s)	144, 184, 232
Alw21I	GWGCWC	2 cut(s)	186, 234
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	2 cut(s)	47, 237
AspS9I	GGNCC	2 cut(s)	124, 202
AsuC2I	CCSGG	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	124
BanII	GRGCYC	3 cut(s)	186, 212, 234
BbsI	GAAGAC	1 cut(s)	127
Bbv12I	GWGCWC	2 cut(s)	186, 234
BbvI	GCAGC	2 cut(s)	34, 224
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	206
BcnI	CCSGG	1 cut(s)	73
BglII	AGATCT	1 cut(s)	168
BisI	GCNGC	2 cut(s)	48, 238
BlsI	GCNGC	2 cut(s)	49, 239
Bme1390I	CCNGG	2 cut(s)	73, 206
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	2 cut(s)	124, 202
BmiI	GGNNCC	1 cut(s)	211
BmrFI	CCNGG	2 cut(s)	73, 206
BpiI	GAAGAC	1 cut(s)	127
BpuEI	CTTGAG	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	73
BsaJI	CCNNGG	3 cut(s)	72, 204, 205
Bse3DI	GCAATG	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	3 cut(s)	72, 204, 205
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	232
BseXI	GCAGC	2 cut(s)	34, 224
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	203
BsiHKAI	GWGCWC	2 cut(s)	186, 234
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	203
Bsp1286I	GDGCHC	3 cut(s)	186, 212, 234
Bsp143I	GATC	1 cut(s)	168
BspACI	CCGC	3 cut(s)	57, 130, 235
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	191
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	211
BsrDI	GCAATG	1 cut(s)	196
BssECI	CCNNGG	3 cut(s)	72, 204, 205
BssMI	GATC	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	61
BstDEI	CTNAG	1 cut(s)	178
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	1 cut(s)	206
BstNSI	RCATGY	1 cut(s)	102
BstSCI	CCNGG	2 cut(s)	71, 204
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	34, 224
BstV2I	GAAGAC	1 cut(s)	127
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	61
Cfr13I	GGNCC	2 cut(s)	124, 202
CseI	GACGC	1 cut(s)	121
CviAII	CATG	1 cut(s)	99
CviJI	RGCY	5 cut(s)	144, 184, 203, 210, 232
CviKI_1	RGCY	5 cut(s)	144, 184, 203, 210, 232
DdeI	CTNAG	1 cut(s)	178
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
Ecl136II	GAGCTC	2 cut(s)	184, 232
Eco24I	GRGCYC	3 cut(s)	186, 212, 234
Eco47I	GGWCC	1 cut(s)	124
Eco53kI	GAGCTC	2 cut(s)	184, 232
EcoICRI	GAGCTC	2 cut(s)	184, 232
EcoO109I	RGGNCCY	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	204
EcoT38I	GRGCYC	3 cut(s)	186, 212, 234
FaeI	CATG	1 cut(s)	102
FaiI	YATR	1 cut(s)	100
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	1 cut(s)	98
FauI	CCCGC	1 cut(s)	64
Fnu4HI	GCNGC	2 cut(s)	48, 238
FriOI	GRGCYC	3 cut(s)	186, 212, 234
Fsp4HI	GCNGC	2 cut(s)	48, 238
GluI	GCNGC	2 cut(s)	48, 238
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	1 cut(s)	121
Hin1II	CATG	1 cut(s)	102
HinfI	GANTC	3 cut(s)	83, 114, 149
HpaII	CCGG	1 cut(s)	72
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	2 cut(s)	104, 139
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	4 cut(s)	114, 122, 227, 230
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	2 cut(s)	50, 165
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	1 cut(s)	178
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	1 cut(s)	102
Kzo9I	GATC	1 cut(s)	168
LmnI	GCTCC	3 cut(s)	215, 237, 245
LpnPI	CCDG	4 cut(s)	73, 85, 191, 218
Lsp1109I	GCAGC	2 cut(s)	34, 224
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MboII	GAAGA	1 cut(s)	127
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	3 cut(s)	186, 212, 234
MlyI	GAGTC	3 cut(s)	77, 108, 143
MmeI	TCCRAC	2 cut(s)	177, 237
MnlI	CCTC	5 cut(s)	53, 79, 115, 187, 206
MseI	TTAA	1 cut(s)	8
MspA1I	CMGCKG	1 cut(s)	237
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	2 cut(s)	73, 206
MvaI	CCWGG	1 cut(s)	206
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	56
NciI	CCSGG	1 cut(s)	73
NdeII	GATC	1 cut(s)	168
NlaIII	CATG	1 cut(s)	102
NlaIV	GGNNCC	1 cut(s)	211
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	1 cut(s)	102
PasI	CCCWGGG	1 cut(s)	205
PciI	ACATGT	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	2 cut(s)	109, 222
PflFI	GACNNNGTC	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	49, 239
PleI	GAGTC	3 cut(s)	77, 108, 143
PpsI	GAGTC	3 cut(s)	77, 108, 143
PscI	ACATGT	1 cut(s)	98
Psp124BI	GAGCTC	2 cut(s)	186, 234
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	2 cut(s)	124, 202
PsuI	RGATCY	1 cut(s)	168
PsyI	GACNNNGTC	1 cut(s)	122
SacI	GAGCTC	2 cut(s)	186, 234
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	2 cut(s)	48, 238
Sau3AI	GATC	1 cut(s)	168
Sau96I	GGNCC	2 cut(s)	124, 202
SchI	GAGTC	3 cut(s)	77, 108, 143
ScrFI	CCNGG	2 cut(s)	73, 206
SduI	GDGCHC	3 cut(s)	186, 212, 234
SetI	ASST	7 cut(s)	45, 126, 146, 179, 186, 219, 234
SinI	GGWCC	1 cut(s)	124
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SsiI	CCGC	3 cut(s)	57, 130, 235
SstI	GAGCTC	2 cut(s)	186, 234
StyD4I	CCNGG	2 cut(s)	71, 204
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	3 cut(s)	36, 117, 147
TaqII	GACCGA	1 cut(s)	123
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	2 cut(s)	47, 237
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	4
TspGWI	ACGGA	1 cut(s)	13
Tth111I	GACNNNGTC	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	124
XceI	RCATGY	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.