Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009728

Physical Location & Seq

Genomic Coordinates Reverse (-)

68429255 .. 68431165

Gene Structure 1911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00131680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGATAACTTCGCAATAGCAAGAAACATGAAAACAATATTCTCTGTCGCCGACTCCAAAGTCCAAACACGTCGTGACCGACGACTTGACGAGGTCCACCGCGTCTTCAAGAGCTTCGACTCCAACGGCGACTACAAGATCTCAACCTCGGAGCTCGGCAATGTCCTCAAGGCCCTGGGCTCCAACGTCCCCCACGACAAGCTCCGCTGCTCCTCTGCTCCAGTGCGTGATGGTCGACCTTGGAAGTCTCTGAGAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

86

Amino Acids

9.79

Weight (kDa)

10.2

Isoelectric Point (pI)

35.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_6	PF13405	32 - 60	1.3e-06	EF-hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009728)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G120900_v2.0.a1
rosa_multiflora	Rmu_co8404669.1_g000001 Rmu_sc0000408.1_g000003 Rmu_sc0000953.1_g000019 Rmu_sc0001010.1_g000054 Rmu_sc0001753.1_g000027 Rmu_sc0003722.1_g000055 Rmu_sc0006460.1_g000015 Rmu_sc0007652.1_g000001 Rmu_sc0011579.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131680
rosa_samantha	Rh1BG331000 Rh1CG345100 Rh1DG362400 Rh2CG012500 Rh3DG360200 Rh4AG205800 Rh4DG228400 Rh5CG327900 Rh7AG067100 Rh7CG080800 Rh7DG081400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	235
AccII	CGCG	1 cut(s)	102
AciI	CCGC	2 cut(s)	100, 205
AdeI	CACNNNGTG	1 cut(s)	74
AflIII	ACRYGT	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	109
AjiI	CACGTC	1 cut(s)	71
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	3 cut(s)	114, 154, 202
AluI	AGCT	3 cut(s)	114, 154, 202
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	252
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	207
AspS9I	GGNCC	2 cut(s)	94, 172
AvaII	GGWCC	1 cut(s)	94
BanII	GRGCYC	2 cut(s)	156, 182
BbsI	GAAGAC	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	1 cut(s)	224
BceAI	ACGGC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	252
BglII	AGATCT	1 cut(s)	138
BisI	GCNGC	1 cut(s)	208
BlsI	GCNGC	1 cut(s)	209
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	1 cut(s)	94
BmgBI	CACGTC	1 cut(s)	71
BmgT120I	GGNCC	2 cut(s)	94, 172
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	97
BpmI	CTGGAG	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	152
BsaJI	CCNNGG	4 cut(s)	147, 174, 175, 239
Bse1I	ACTGG	1 cut(s)	221
Bse3DI	GCAATG	1 cut(s)	166
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	4 cut(s)	147, 174, 175, 239
BseMI	GCAATG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	221
BseRI	GAGGAG	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	194
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	252
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	173
Bsp1286I	GDGCHC	2 cut(s)	156, 182
Bsp143I	GATC	1 cut(s)	138
BspACI	CCGC	2 cut(s)	100, 205
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	4 cut(s)	147, 174, 175, 239
BssMI	GATC	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	239
Bst2UI	CCWGG	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	251
BstFNI	CGCG	1 cut(s)	102
BstKTI	GATC	1 cut(s)	141
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	1 cut(s)	138
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	174
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	194
BstV2I	GAAGAC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	173
BtrI	CACGTC	1 cut(s)	71
BtsIMutI	CAGTG	1 cut(s)	228
Cfr13I	GGNCC	2 cut(s)	94, 172
CseI	GACGC	1 cut(s)	91
CviAII	CATG	1 cut(s)	28
CviJI	RGCY	5 cut(s)	114, 154, 173, 180, 202
CviKI_1	RGCY	5 cut(s)	114, 154, 173, 180, 202
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
DraIII	CACNNNGTG	1 cut(s)	74
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
Ecl136II	GAGCTC	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	239
Eco24I	GRGCYC	2 cut(s)	156, 182
Eco47I	GGWCC	1 cut(s)	94
Eco53kI	GAGCTC	1 cut(s)	154
EcoICRI	GAGCTC	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	239
EcoT38I	GRGCYC	2 cut(s)	156, 182
ErhI	CCWWGG	1 cut(s)	239
FaeI	CATG	1 cut(s)	31
FaiI	YATR	1 cut(s)	29
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	1 cut(s)	27
FblI	GTMKAC	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	208
FriOI	GRGCYC	2 cut(s)	156, 182
Fsp4HI	GCNGC	1 cut(s)	208
GluI	GCNGC	1 cut(s)	208
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	173
HgaI	GACGC	1 cut(s)	91
Hin1II	CATG	1 cut(s)	31
HincII	GTYRAC	1 cut(s)	236
HindII	GTYRAC	1 cut(s)	236
HinfI	GANTC	3 cut(s)	53, 119, 255
Hpy166II	GTNNAC	2 cut(s)	97, 236
Hpy188I	TCNGA	3 cut(s)	151, 252, 260
Hpy188III	TCNNGA	2 cut(s)	74, 109
Hpy8I	GTNNAC	2 cut(s)	97, 236
Hpy99I	CGWCG	2 cut(s)	75, 84
HpyCH4IV	ACGT	2 cut(s)	70, 186
HpyF3I	CTNAG	1 cut(s)	251
HpySE526I	ACGT	2 cut(s)	70, 186
Hsp92II	CATG	1 cut(s)	31
Kzo9I	GATC	1 cut(s)	138
LmnI	GCTCC	5 cut(s)	151, 185, 207, 215, 223
LpnPI	CCDG	3 cut(s)	161, 188, 234
Lsp1109I	GCAGC	1 cut(s)	194
MaeII	ACGT	2 cut(s)	70, 186
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	1 cut(s)	97
MflI	RGATCY	1 cut(s)	138
MhlI	GDGCHC	2 cut(s)	156, 182
MlyI	GAGTC	2 cut(s)	47, 113
MmeI	TCCRAC	2 cut(s)	147, 207
MnlI	CCTC	4 cut(s)	85, 157, 176, 223
MspA1I	CMGCKG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	176
MvnI	CGCG	1 cut(s)	102
NdeII	GATC	1 cut(s)	138
NlaIII	CATG	1 cut(s)	31
NlaIV	GGNNCC	1 cut(s)	181
NmeAIII	GCCGAG	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	74
PasI	CCCWGGG	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	3 cut(s)	76, 79, 192
PflFI	GACNNNGTC	1 cut(s)	92
PkrI	GCNGC	1 cut(s)	209
PleI	GAGTC	2 cut(s)	47, 113
PpsI	GAGTC	2 cut(s)	47, 113
Psp124BI	GAGCTC	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	2 cut(s)	94, 172
PsuI	RGATCY	1 cut(s)	138
PsyI	GACNNNGTC	1 cut(s)	92
SacI	GAGCTC	1 cut(s)	156
SalI	GTCGAC	1 cut(s)	234
SatI	GCNGC	1 cut(s)	208
Sau3AI	GATC	1 cut(s)	138
Sau96I	GGNCC	2 cut(s)	94, 172
SchI	GAGTC	2 cut(s)	47, 113
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	2 cut(s)	156, 182
SetI	ASST	8 cut(s)	73, 96, 116, 149, 156, 189, 204, 241
SinI	GGWCC	1 cut(s)	94
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
SsiI	CCGC	2 cut(s)	100, 205
SspI	AATATT	1 cut(s)	39
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	174
StyI	CCWWGG	1 cut(s)	239
TaiI	ACGT	2 cut(s)	73, 189
TaqI	TCGA	2 cut(s)	117, 235
TaqII	GACCGA	1 cut(s)	93
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	1 cut(s)	207
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	228
Tth111I	GACNNNGTC	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.