Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0009728

Physical Location & Seq

Genomic Coordinates Reverse (-)

36533248 .. 36534691

Gene Structure 1444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG327900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCTTGGGCTGCTAATTGACTACGGTGAAGAGGATGATGATCATTGGGTAGTTGGAGAGGAGACCGGCGGGCAGGAAGAGGAGCGGGCTAGAGTCAATTGGGGAGATGATGGTGGAGAAGAGTCGCCGACTCCAAAGTCCAAAGTCCAAACCCGTCGTGACCGACGACTCGACGAGGTCCACCGCGTCTTCAAGAGCTTCGACTCCAACGGCGACTGCAAGATCTCAAATTTGGAGCTCGGCAAAGTCCTCAAGGCCCTCGGCTCCAACGTCCCCGAGAACGAGCTCCAGCGCGTGATGGTCGACCTCGGTGGTCCACTGAGATCGTCGGCGACGGCGAACTTCTGGAGGCTGAGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

120

Amino Acids

13.54

Weight (kDa)

4.83

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009728)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G120900_v2.0.a1
rosa_multiflora	Rmu_co8404669.1_g000001 Rmu_sc0000408.1_g000003 Rmu_sc0000953.1_g000019 Rmu_sc0001010.1_g000054 Rmu_sc0001753.1_g000027 Rmu_sc0003722.1_g000055 Rmu_sc0006460.1_g000015 Rmu_sc0007652.1_g000001 Rmu_sc0011579.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131680
rosa_samantha	Rh1BG331000 Rh1CG345100 Rh1DG362400 Rh2CG012500 Rh3DG360200 Rh4AG205800 Rh4DG228400 Rh5CG327900 Rh7AG067100 Rh7CG080800 Rh7DG081400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	136
AccBSI	CCGCTC	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	303
AccII	CGCG	2 cut(s)	186, 294
AciI	CCGC	3 cut(s)	69, 85, 184
AcsI	RAATTY	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	193
AluBI	AGCT	3 cut(s)	198, 238, 286
AluI	AGCT	3 cut(s)	198, 238, 286
Alw21I	GWGCWC	2 cut(s)	240, 288
Alw26I	GTCTC	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	275
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	10
ApoI	RAATTY	1 cut(s)	229
AspLEI	GCGC	1 cut(s)	294
AspS9I	GGNCC	3 cut(s)	178, 256, 314
AsuHPI	GGTGA	1 cut(s)	38
AvaI	CYCGRG	1 cut(s)	275
AvaII	GGWCC	2 cut(s)	178, 314
BanII	GRGCYC	2 cut(s)	240, 288
BbsI	GAAGAC	1 cut(s)	181
Bbv12I	GWGCWC	2 cut(s)	240, 288
BccI	CCATC	2 cut(s)	104, 292
BceAI	ACGGC	2 cut(s)	226, 351
BclI	TGATCA	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	1 cut(s)	90
BglII	AGATCT	1 cut(s)	222
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
Bme18I	GGWCC	2 cut(s)	178, 314
BmeT110I	CYCGRG	1 cut(s)	275
BmgT120I	GGNCC	3 cut(s)	178, 256, 314
BmiI	GGNNCC	1 cut(s)	265
BpiI	GAAGAC	1 cut(s)	181
BpmI	CTGGAG	1 cut(s)	272
BpuEI	CTTGAG	1 cut(s)	236
BsaBI	GATNNNNATC	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	259, 307
Bse118I	RCCGGY	1 cut(s)	65
Bse8I	GATNNNNATC	1 cut(s)	39
BseDI	CCNNGG	2 cut(s)	259, 307
BseGI	GGATG	1 cut(s)	40
BseJI	GATNNNNATC	1 cut(s)	39
BseMII	CTCAG	2 cut(s)	311, 344
BseRI	GAGGAG	2 cut(s)	74, 95
Bsh1236I	CGCG	2 cut(s)	186, 294
BshFI	GGCC	1 cut(s)	257
BsiHKAI	GWGCWC	2 cut(s)	240, 288
BsiHKCI	CYCGRG	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	257
Bso31I	GGTCTC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	275
Bsp1286I	GDGCHC	2 cut(s)	240, 288
Bsp143I	GATC	3 cut(s)	40, 222, 323
BspACI	CCGC	3 cut(s)	69, 85, 184
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	2 cut(s)	312, 345
BspFNI	CGCG	2 cut(s)	186, 294
BspLI	GGNNCC	1 cut(s)	265
BspTNI	GGTCTC	1 cut(s)	56
BsrBI	CCGCTC	1 cut(s)	85
BsrFI	RCCGGY	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	2 cut(s)	259, 307
BssMI	GATC	3 cut(s)	40, 222, 323
Bst4CI	ACNGT	1 cut(s)	26
Bst6I	CTCTTC	3 cut(s)	24, 72, 114
BstC8I	GCNNGC	2 cut(s)	71, 87
BstDEI	CTNAG	2 cut(s)	320, 353
BstF5I	GGATG	1 cut(s)	40
BstFNI	CGCG	2 cut(s)	186, 294
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	3 cut(s)	43, 225, 326
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	3 cut(s)	40, 222, 323
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstUI	CGCG	2 cut(s)	186, 294
BstV2I	GAAGAC	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	222
BsuRI	GGCC	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	317
Cac8I	GCNNGC	2 cut(s)	71, 87
CfoI	GCGC	1 cut(s)	294
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	3 cut(s)	178, 256, 314
CseI	GACGC	1 cut(s)	175
CviJI	RGCY	8 cut(s)	10, 89, 198, 238, 257, 264, 286, 352
CviKI_1	RGCY	8 cut(s)	10, 89, 198, 238, 257, 264, 286, 352
DdeI	CTNAG	2 cut(s)	320, 353
DpnI	GATC	3 cut(s)	42, 224, 325
DpnII	GATC	3 cut(s)	40, 222, 323
DrdI	GACNNNNNNGTC	1 cut(s)	136
DseDI	GACNNNNNNGTC	1 cut(s)	136
Eam1104I	CTCTTC	3 cut(s)	24, 72, 114
EarI	CTCTTC	3 cut(s)	24, 72, 114
Ecl136II	GAGCTC	2 cut(s)	238, 286
Eco24I	GRGCYC	2 cut(s)	240, 288
Eco31I	GGTCTC	1 cut(s)	56
Eco47I	GGWCC	2 cut(s)	178, 314
Eco53kI	GAGCTC	2 cut(s)	238, 286
Eco88I	CYCGRG	1 cut(s)	275
EcoICRI	GAGCTC	2 cut(s)	238, 286
EcoO109I	RGGNCCY	1 cut(s)	256
EcoT38I	GRGCYC	2 cut(s)	240, 288
FaqI	GGGAC	1 cut(s)	257
FauI	CCCGC	2 cut(s)	62, 78
FbaI	TGATCA	1 cut(s)	40
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	1 cut(s)	11
FokI	GGATG	1 cut(s)	47
FriOI	GRGCYC	2 cut(s)	240, 288
Fsp4HI	GCNGC	1 cut(s)	11
FspBI	CTAG	1 cut(s)	90
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	1 cut(s)	11
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	66
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	1 cut(s)	294
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	5 cut(s)	93, 122, 130, 168, 203
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	3 cut(s)	181, 304, 317
Hpy188III	TCNNGA	3 cut(s)	158, 193, 346
Hpy8I	GTNNAC	3 cut(s)	181, 304, 317
Hpy99I	CGWCG	5 cut(s)	159, 168, 176, 331, 337
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	1 cut(s)	219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	2 cut(s)	320, 353
HpySE526I	ACGT	1 cut(s)	270
HspAI	GCGC	1 cut(s)	292
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	3 cut(s)	40, 222, 323
LmnI	GCTCC	4 cut(s)	82, 235, 269, 291
LpnPI	CCDG	4 cut(s)	59, 79, 302, 331
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	3 cut(s)	42, 224, 325
MbiI	CCGCTC	1 cut(s)	85
MboI	GATC	3 cut(s)	40, 222, 323
MboII	GAAGA	4 cut(s)	41, 89, 131, 181
MfeI	CAATTG	1 cut(s)	97
MflI	RGATCY	1 cut(s)	222
MhlI	GDGCHC	2 cut(s)	240, 288
MluCI	AATT	3 cut(s)	15, 97, 229
MlyI	GAGTC	5 cut(s)	102, 124, 131, 162, 197
MmeI	TCCRAC	3 cut(s)	34, 231, 291
MnlI	CCTC	8 cut(s)	25, 52, 73, 169, 260, 269, 317, 342
MspI	CCGG	1 cut(s)	66
MunI	CAATTG	1 cut(s)	97
MvnI	CGCG	2 cut(s)	186, 294
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	3 cut(s)	40, 222, 323
NlaIV	GGNNCC	1 cut(s)	265
NmeAIII	GCCGAG	2 cut(s)	219, 240
NmuCI	GTSAC	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	3 cut(s)	163, 267, 335
PflFI	GACNNNGTC	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	12
PleI	GAGTC	5 cut(s)	101, 124, 130, 162, 197
PpsI	GAGTC	5 cut(s)	101, 124, 130, 162, 197
Psp124BI	GAGCTC	2 cut(s)	240, 288
PspN4I	GGNNCC	1 cut(s)	265
PspPI	GGNCC	3 cut(s)	178, 256, 314
PsuI	RGATCY	1 cut(s)	222
PsyI	GACNNNGTC	1 cut(s)	176
SacI	GAGCTC	2 cut(s)	240, 288
SalI	GTCGAC	1 cut(s)	302
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	3 cut(s)	40, 222, 323
Sau96I	GGNCC	3 cut(s)	178, 256, 314
SchI	GAGTC	5 cut(s)	102, 124, 131, 162, 197
SduI	GDGCHC	2 cut(s)	240, 288
SetI	ASST	6 cut(s)	180, 200, 240, 273, 288, 309
SinI	GGWCC	2 cut(s)	178, 314
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	3 cut(s)	15, 97, 229
SsiI	CCGC	3 cut(s)	69, 85, 184
SspMI	CTAG	1 cut(s)	90
SstI	GAGCTC	2 cut(s)	240, 288
TaaI	ACNGT	1 cut(s)	26
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	3 cut(s)	171, 201, 303
TaqII	GACCGA	1 cut(s)	177
TasI	AATT	3 cut(s)	15, 97, 229
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	158
TspRI	CASTG	1 cut(s)	324
Tth111I	GACNNNGTC	1 cut(s)	176
VpaK11BI	GGWCC	2 cut(s)	178, 314
XapI	RAATTY	1 cut(s)	229
XmiI	GTMKAC	1 cut(s)	303
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.