Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001753.1

Orthogroup ID

OG0009728

Physical Location & Seq

Genomic Coordinates Reverse (-)

129989 .. 130285

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001753.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atggtgggtgatccatctggaagtgtacatatacttactgcaccagtccaaactcgtcgtgacccacgactcgacgaggtccaccgcgtcttcaagagcttcgactccaacggcgactgcaagatctcaacctcgaagctcggcaacgtcctcaaggccctcggctctaacgtccccgaggacgagctccaacgcgtgatggtcgacctcgatggtccactgagatcgtccctgacggtgaacttctggagagatttgagggagaatggcggagccgcggaggagcgaaggctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

98

Amino Acids

10.87

Weight (kDa)

6.08

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009728)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G120900_v2.0.a1
rosa_multiflora	Rmu_co8404669.1_g000001 Rmu_sc0000408.1_g000003 Rmu_sc0000953.1_g000019 Rmu_sc0001010.1_g000054 Rmu_sc0001753.1_g000027 Rmu_sc0003722.1_g000055 Rmu_sc0006460.1_g000015 Rmu_sc0007652.1_g000001 Rmu_sc0011579.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131680
rosa_samantha	Rh1BG331000 Rh1CG345100 Rh1DG362400 Rh2CG012500 Rh3DG360200 Rh4AG205800 Rh4DG228400 Rh5CG327900 Rh7AG067100 Rh7CG080800 Rh7DG081400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	204
AccII	CGCG	3 cut(s)	87, 195, 278
AciI	CCGC	4 cut(s)	85, 270, 276, 278
AclWI	GGATC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	27
AflIII	ACRYGT	1 cut(s)	193
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	3 cut(s)	99, 139, 187
AluI	AGCT	3 cut(s)	99, 139, 187
Alw21I	GWGCWC	1 cut(s)	189
AlwI	GGATC	1 cut(s)	5
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	1 cut(s)	156
AspS9I	GGNCC	3 cut(s)	79, 157, 215
AsuHPI	GGTGA	2 cut(s)	20, 250
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	2 cut(s)	79, 215
BanII	GRGCYC	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	189
BccI	CCATC	3 cut(s)	22, 193, 206
BceAI	ACGGC	1 cut(s)	127
BglII	AGATCT	1 cut(s)	123
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme18I	GGWCC	2 cut(s)	79, 215
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	3 cut(s)	79, 157, 215
BmiI	GGNNCC	1 cut(s)	274
BpiI	GAAGAC	1 cut(s)	82
BpmI	CTGGAG	1 cut(s)	268
BpuEI	CTTGAG	1 cut(s)	137
BsaJI	CCNNGG	3 cut(s)	160, 177, 276
Bse1I	ACTGG	1 cut(s)	44
BseDI	CCNNGG	3 cut(s)	160, 177, 276
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	44
BseRI	GAGGAG	1 cut(s)	296
BsgI	GTGCAG	1 cut(s)	24
Bsh1236I	CGCG	3 cut(s)	87, 195, 278
BshFI	GGCC	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	176
BslFI	GGGAC	2 cut(s)	158, 214
BsmFI	GGGAC	2 cut(s)	158, 214
BsnI	GGCC	1 cut(s)	158
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp1407I	TGTACA	1 cut(s)	25
Bsp143I	GATC	3 cut(s)	10, 123, 224
BspACI	CCGC	4 cut(s)	85, 270, 276, 278
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	1 cut(s)	213
BspFNI	CGCG	3 cut(s)	87, 195, 278
BspLI	GGNNCC	1 cut(s)	274
BspPI	GGATC	1 cut(s)	5
BsrGI	TGTACA	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	44
BssECI	CCNNGG	3 cut(s)	160, 177, 276
BssMI	GATC	3 cut(s)	10, 123, 224
Bst4CI	ACNGT	1 cut(s)	238
BstAUI	TGTACA	1 cut(s)	25
BstDEI	CTNAG	1 cut(s)	221
BstDSI	CCRYGG	1 cut(s)	276
BstFNI	CGCG	3 cut(s)	87, 195, 278
BstKTI	GATC	3 cut(s)	13, 126, 227
BstMBI	GATC	3 cut(s)	10, 123, 224
BstUI	CGCG	3 cut(s)	87, 195, 278
BstV2I	GAAGAC	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	158
BtgI	CCRYGG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	218
Cfr13I	GGNCC	3 cut(s)	79, 157, 215
Cfr42I	CCGCGG	1 cut(s)	279
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	26
CviJI	RGCY	7 cut(s)	99, 139, 158, 165, 187, 275, 292
CviKI_1	RGCY	7 cut(s)	99, 139, 158, 165, 187, 275, 292
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	3 cut(s)	12, 125, 226
DpnII	GATC	3 cut(s)	10, 123, 224
EciI	GGCGGA	1 cut(s)	285
Ecl136II	GAGCTC	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	189
Eco47I	GGWCC	2 cut(s)	79, 215
Eco53kI	GAGCTC	1 cut(s)	187
Eco88I	CYCGRG	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	187
EcoO109I	RGGNCCY	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	189
FaiI	YATR	2 cut(s)	30, 32
FaqI	GGGAC	2 cut(s)	158, 214
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	1 cut(s)	276
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	276
GluI	GCNGC	1 cut(s)	276
GsuI	CTGGAG	1 cut(s)	268
HaeIII	GGCC	1 cut(s)	158
HgaI	GACGC	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	2 cut(s)	69, 104
HphI	GGTGA	2 cut(s)	20, 250
Hpy166II	GTNNAC	5 cut(s)	26, 82, 205, 218, 241
Hpy188III	TCNNGA	4 cut(s)	18, 59, 94, 247
Hpy8I	GTNNAC	5 cut(s)	26, 82, 205, 218, 241
Hpy99I	CGWCG	2 cut(s)	60, 77
HpyAV	CCTTC	1 cut(s)	282
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	2 cut(s)	147, 171
HpyCH4V	TGCA	2 cut(s)	41, 120
HpyF3I	CTNAG	1 cut(s)	221
HpySE526I	ACGT	2 cut(s)	147, 171
KspI	CCGCGG	1 cut(s)	279
Kzo9I	GATC	3 cut(s)	10, 123, 224
LmnI	GCTCC	3 cut(s)	192, 272, 283
LpnPI	CCDG	4 cut(s)	3, 57, 232, 245
MaeII	ACGT	2 cut(s)	147, 171
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	3 cut(s)	12, 125, 226
MboI	GATC	3 cut(s)	10, 123, 224
MboII	GAAGA	1 cut(s)	82
MflI	RGATCY	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	189
MluI	ACGCGT	1 cut(s)	193
MlyI	GAGTC	2 cut(s)	63, 98
MmeI	TCCRAC	2 cut(s)	132, 214
MnlI	CCTC	8 cut(s)	70, 142, 161, 170, 172, 218, 252, 274
MspA1I	CMGCKG	1 cut(s)	278
MvnI	CGCG	3 cut(s)	87, 195, 278
NdeII	GATC	3 cut(s)	10, 123, 224
NlaIV	GGNNCC	1 cut(s)	274
NmeAIII	GCCGAG	2 cut(s)	120, 141
NmuCI	GTSAC	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	2 cut(s)	64, 168
PflFI	GACNNNGTC	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	277
PleI	GAGTC	2 cut(s)	63, 98
PpsI	GAGTC	2 cut(s)	63, 98
Psp124BI	GAGCTC	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	274
PspPI	GGNCC	3 cut(s)	79, 157, 215
PsuI	RGATCY	1 cut(s)	123
PsyI	GACNNNGTC	1 cut(s)	77
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
SacI	GAGCTC	1 cut(s)	189
SacII	CCGCGG	1 cut(s)	279
SalI	GTCGAC	1 cut(s)	203
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	3 cut(s)	10, 123, 224
Sau96I	GGNCC	3 cut(s)	79, 157, 215
SchI	GAGTC	2 cut(s)	63, 98
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	8 cut(s)	81, 101, 134, 141, 150, 174, 189, 210
Sfr303I	CCGCGG	1 cut(s)	279
SgrBI	CCGCGG	1 cut(s)	279
SinI	GGWCC	2 cut(s)	79, 215
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SsiI	CCGC	4 cut(s)	85, 270, 276, 278
SstI	GAGCTC	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	2 cut(s)	150, 174
TaqI	TCGA	5 cut(s)	72, 102, 134, 204, 210
TatI	WGTACW	1 cut(s)	25
TauI	GCSGC	1 cut(s)	278
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	59
TspRI	CASTG	1 cut(s)	225
Tth111I	GACNNNGTC	1 cut(s)	77
VpaK11BI	GGWCC	2 cut(s)	79, 215
XmiI	GTMKAC	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.