Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003722.1

Orthogroup ID

OG0009728

Physical Location & Seq

Genomic Coordinates Reverse (-)

275076 .. 275330

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003722.1_g000055.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

atggaaaaaattaatctgccaccagtcgccgactccaaagtccaaacccgtcgtgaccgacgacttgacgaggtccaccgcgtcttcaagaggttcgactccaacggcgactgcaagatctcaacctcggagctcgccaacatcctcaaggccctttgctctaacgtccctgaggacgagctccagcgcgtgatggtcaacctcggtggtccactgagatcgtcggcgatggagaacttctggagggagatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

84

Amino Acids

9.67

Weight (kDa)

7.81

Isoelectric Point (pI)

62.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009728)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G120900_v2.0.a1
rosa_multiflora	Rmu_co8404669.1_g000001 Rmu_sc0000408.1_g000003 Rmu_sc0000953.1_g000019 Rmu_sc0001010.1_g000054 Rmu_sc0001753.1_g000027 Rmu_sc0003722.1_g000055 Rmu_sc0006460.1_g000015 Rmu_sc0007652.1_g000001 Rmu_sc0011579.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131680
rosa_samantha	Rh1BG331000 Rh1CG345100 Rh1DG362400 Rh2CG012500 Rh3DG360200 Rh4AG205800 Rh4DG228400 Rh5CG327900 Rh7AG067100 Rh7CG080800 Rh7DG081400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
AccII	CGCG	2 cut(s)	81, 189
AciI	CCGC	1 cut(s)	79
AgsI	TTSAA	1 cut(s)	88
AluBI	AGCT	2 cut(s)	133, 181
AluI	AGCT	2 cut(s)	133, 181
Alw21I	GWGCWC	2 cut(s)	135, 183
AoxI	GGCC	1 cut(s)	150
AseI	ATTAAT	1 cut(s)	12
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	3 cut(s)	73, 151, 209
AvaII	GGWCC	2 cut(s)	73, 209
AxyI	CCTNAGG	1 cut(s)	171
BanII	GRGCYC	2 cut(s)	135, 183
BbsI	GAAGAC	1 cut(s)	76
Bbv12I	GWGCWC	2 cut(s)	135, 183
BccI	CCATC	2 cut(s)	187, 223
BceAI	ACGGC	1 cut(s)	121
BglII	AGATCT	1 cut(s)	117
Bme18I	GGWCC	2 cut(s)	73, 209
BmgT120I	GGNCC	3 cut(s)	73, 151, 209
BpiI	GAAGAC	1 cut(s)	76
BpmI	CTGGAG	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	126, 202
Bse1I	ACTGG	1 cut(s)	23
Bse21I	CCTNAGG	1 cut(s)	171
BseDI	CCNNGG	2 cut(s)	126, 202
BseGI	GGATG	1 cut(s)	141
BseMII	CTCAG	2 cut(s)	162, 206
BseNI	ACTGG	1 cut(s)	23
Bsh1236I	CGCG	2 cut(s)	81, 189
BshFI	GGCC	1 cut(s)	152
BsiHKAI	GWGCWC	2 cut(s)	135, 183
BslFI	GGGAC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	152
Bsp1286I	GDGCHC	2 cut(s)	135, 183
Bsp143I	GATC	2 cut(s)	117, 218
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	2 cut(s)	163, 207
BspFNI	CGCG	2 cut(s)	81, 189
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	2 cut(s)	126, 202
BssMI	GATC	2 cut(s)	117, 218
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	171, 215
BstF5I	GGATG	1 cut(s)	141
BstFNI	CGCG	2 cut(s)	81, 189
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	2 cut(s)	120, 221
BstMBI	GATC	2 cut(s)	117, 218
BstUI	CGCG	2 cut(s)	81, 189
BstV2I	GAAGAC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
Bsu36I	CCTNAGG	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	152
BtgZI	GCGATG	1 cut(s)	242
BtsCI	GGATG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	212
Cac8I	GCNNGC	1 cut(s)	135
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	3 cut(s)	73, 151, 209
CseI	GACGC	1 cut(s)	70
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviJI	RGCY	3 cut(s)	133, 152, 181
CviKI_1	RGCY	3 cut(s)	133, 152, 181
DdeI	CTNAG	2 cut(s)	171, 215
DpnI	GATC	2 cut(s)	119, 220
DpnII	GATC	2 cut(s)	117, 218
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
Ecl136II	GAGCTC	2 cut(s)	133, 181
Eco24I	GRGCYC	2 cut(s)	135, 183
Eco47I	GGWCC	2 cut(s)	73, 209
Eco53kI	GAGCTC	2 cut(s)	133, 181
Eco81I	CCTNAGG	1 cut(s)	171
EcoICRI	GAGCTC	2 cut(s)	133, 181
EcoO109I	RGGNCCY	1 cut(s)	151
EcoT38I	GRGCYC	2 cut(s)	135, 183
FaqI	GGGAC	1 cut(s)	152
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	2 cut(s)	135, 183
GlaI	GCGC	1 cut(s)	188
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	152
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	189
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	2 cut(s)	32, 98
Hpy166II	GTNNAC	3 cut(s)	76, 199, 212
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	3 cut(s)	53, 88, 241
Hpy8I	GTNNAC	3 cut(s)	76, 199, 212
Hpy99I	CGWCG	3 cut(s)	54, 63, 226
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	1 cut(s)	114
HpyF3I	CTNAG	2 cut(s)	171, 215
HpySE526I	ACGT	1 cut(s)	165
HspAI	GCGC	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	117, 218
LmnI	GCTCC	2 cut(s)	130, 186
LpnPI	CCDG	4 cut(s)	36, 183, 197, 226
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	2 cut(s)	119, 220
MboI	GATC	2 cut(s)	117, 218
MboII	GAAGA	1 cut(s)	76
MflI	RGATCY	1 cut(s)	117
MhlI	GDGCHC	2 cut(s)	135, 183
MluCI	AATT	1 cut(s)	9
MlyI	GAGTC	2 cut(s)	26, 92
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	7 cut(s)	64, 84, 136, 155, 166, 212, 237
MseI	TTAA	1 cut(s)	12
MvnI	CGCG	2 cut(s)	81, 189
NdeII	GATC	2 cut(s)	117, 218
NmuCI	GTSAC	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	1 cut(s)	58
PflFI	GACNNNGTC	1 cut(s)	71
PleI	GAGTC	2 cut(s)	26, 92
PpsI	GAGTC	2 cut(s)	26, 92
PshBI	ATTAAT	1 cut(s)	12
Psp124BI	GAGCTC	2 cut(s)	135, 183
PspPI	GGNCC	3 cut(s)	73, 151, 209
PsuI	RGATCY	1 cut(s)	117
PsyI	GACNNNGTC	1 cut(s)	71
SacI	GAGCTC	2 cut(s)	135, 183
SaqAI	TTAA	1 cut(s)	12
Sau3AI	GATC	2 cut(s)	117, 218
Sau96I	GGNCC	3 cut(s)	73, 151, 209
SchI	GAGTC	2 cut(s)	26, 92
SduI	GDGCHC	2 cut(s)	135, 183
SetI	ASST	7 cut(s)	75, 95, 128, 135, 168, 183, 204
SinI	GGWCC	2 cut(s)	73, 209
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	9
SsiI	CCGC	1 cut(s)	79
SstI	GAGCTC	2 cut(s)	135, 183
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	1 cut(s)	96
TaqII	GACCGA	1 cut(s)	72
TasI	AATT	1 cut(s)	9
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	219
TseFI	GTSAC	1 cut(s)	53
Tsp45I	GTSAC	1 cut(s)	53
TspRI	CASTG	1 cut(s)	219
Tth111I	GACNNNGTC	1 cut(s)	71
VpaK11BI	GGWCC	2 cut(s)	73, 209
VspI	ATTAAT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.