Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007652.1

Orthogroup ID

OG0009728

Physical Location & Seq

Genomic Coordinates Reverse (-)

1146 .. 1515

Gene Structure 370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007652.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

atgagaacacatccagtccagataatcagattcatcgccgactccaaagtccaaacacatcatgaccgacaactcgacgaggtccactgcgtcttcaagagcttcgactccaacgacgactgcaagatctcaacctcggagcttggcaatttccttaaggccctaggctccaacgtcccctacgacgagctccgcagctcctttgcaccagtgcgtgatggtcgacctcggaagtctctgagagtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

82

Amino Acids

9.41

Weight (kDa)

8.74

Isoelectric Point (pI)

34.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009728)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G120900_v2.0.a1
rosa_multiflora	Rmu_co8404669.1_g000001 Rmu_sc0000408.1_g000003 Rmu_sc0000953.1_g000019 Rmu_sc0001010.1_g000054 Rmu_sc0001753.1_g000027 Rmu_sc0003722.1_g000055 Rmu_sc0006460.1_g000015 Rmu_sc0007652.1_g000001 Rmu_sc0011579.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131680
rosa_samantha	Rh1BG331000 Rh1CG345100 Rh1DG362400 Rh2CG012500 Rh3DG360200 Rh4AG205800 Rh4DG228400 Rh5CG327900 Rh7AG067100 Rh7CG080800 Rh7DG081400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	47
AccI	GTMKAC	1 cut(s)	223
AciI	CCGC	1 cut(s)	193
AflII	CTTAAG	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	97
AluBI	AGCT	4 cut(s)	102, 142, 190, 198
AluI	AGCT	4 cut(s)	102, 142, 190, 198
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	240
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	195
AspA2I	CCTAGG	1 cut(s)	163
AspS9I	GGNCC	2 cut(s)	82, 160
AvaII	GGWCC	1 cut(s)	82
AvrII	CCTAGG	1 cut(s)	163
BanII	GRGCYC	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	240
BfaI	CTAG	1 cut(s)	164
BfrI	CTTAAG	1 cut(s)	155
BglII	AGATCT	1 cut(s)	126
BisI	GCNGC	1 cut(s)	196
BlnI	CCTAGG	1 cut(s)	163
BlsI	GCNGC	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	2 cut(s)	82, 160
BmiI	GGNNCC	1 cut(s)	169
BpiI	GAAGAC	1 cut(s)	85
BsaJI	CCNNGG	3 cut(s)	135, 163, 227
Bse1I	ACTGG	2 cut(s)	14, 209
BseDI	CCNNGG	3 cut(s)	135, 163, 227
BseGI	GGATG	1 cut(s)	10
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	2 cut(s)	14, 209
BseXI	GCAGC	1 cut(s)	207
BshFI	GGCC	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	161
BsmAI	GTCTC	1 cut(s)	240
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	126
BspACI	CCGC	1 cut(s)	193
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	1 cut(s)	231
BspHI	TCATGA	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	169
BspTI	CTTAAG	1 cut(s)	155
BsrI	ACTGG	2 cut(s)	14, 209
BssECI	CCNNGG	3 cut(s)	135, 163, 227
BssMI	GATC	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	163
BstAFI	CTTAAG	1 cut(s)	155
BstDEI	CTNAG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	129
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	207
BstV2I	GAAGAC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	161
BtgZI	GCGATG	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	85
BtsIMutI	CAGTG	2 cut(s)	85, 216
CciI	TCATGA	1 cut(s)	61
Cfr13I	GGNCC	2 cut(s)	82, 160
CseI	GACGC	1 cut(s)	79
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	6 cut(s)	102, 142, 161, 168, 190, 198
CviKI_1	RGCY	6 cut(s)	102, 142, 161, 168, 190, 198
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	82
Eco53kI	GAGCTC	1 cut(s)	190
EcoICRI	GAGCTC	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	1 cut(s)	65
FaiI	YATR	1 cut(s)	63
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	196
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	1 cut(s)	196
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	161
HgaI	GACGC	1 cut(s)	79
Hin1II	CATG	1 cut(s)	65
HincII	GTYRAC	1 cut(s)	224
HindII	GTYRAC	1 cut(s)	224
HinfI	GANTC	4 cut(s)	30, 41, 107, 243
Hpy166II	GTNNAC	2 cut(s)	85, 224
Hpy188I	TCNGA	5 cut(s)	29, 139, 231, 240, 248
Hpy188III	TCNNGA	3 cut(s)	19, 62, 97
Hpy8I	GTNNAC	2 cut(s)	85, 224
Hpy99I	CGWCG	3 cut(s)	80, 119, 188
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	2 cut(s)	123, 206
HpyF3I	CTNAG	1 cut(s)	239
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	65
Kzo9I	GATC	1 cut(s)	126
LmnI	GCTCC	4 cut(s)	139, 173, 195, 203
LpnPI	CCDG	3 cut(s)	27, 32, 222
Lsp1109I	GCAGC	1 cut(s)	207
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	1 cut(s)	174
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MboII	GAAGA	1 cut(s)	85
MflI	RGATCY	1 cut(s)	126
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	1 cut(s)	148
MlyI	GAGTC	2 cut(s)	35, 101
MmeI	TCCRAC	2 cut(s)	135, 195
MnlI	CCTC	3 cut(s)	73, 145, 237
MseI	TTAA	1 cut(s)	156
MspCI	CTTAAG	1 cut(s)	155
NdeII	GATC	1 cut(s)	126
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	1 cut(s)	169
PagI	TCATGA	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	2 cut(s)	111, 180
PfeI	GAWTC	1 cut(s)	30
PflFI	GACNNNGTC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	197
PleI	GAGTC	2 cut(s)	35, 101
PpsI	GAGTC	2 cut(s)	35, 101
Psp124BI	GAGCTC	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	169
PspPI	GGNCC	2 cut(s)	82, 160
PsuI	RGATCY	1 cut(s)	126
PsyI	GACNNNGTC	1 cut(s)	80
SacI	GAGCTC	1 cut(s)	192
SalI	GTCGAC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	1 cut(s)	196
Sau3AI	GATC	1 cut(s)	126
Sau96I	GGNCC	2 cut(s)	82, 160
SchI	GAGTC	2 cut(s)	35, 101
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	8 cut(s)	84, 104, 137, 144, 177, 192, 200, 229
SinI	GGWCC	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	1 cut(s)	148
SsiI	CCGC	1 cut(s)	193
SspMI	CTAG	1 cut(s)	164
SstI	GAGCTC	1 cut(s)	192
StyI	CCWWGG	1 cut(s)	163
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	3 cut(s)	75, 105, 223
TaqII	GACCGA	1 cut(s)	81
TasI	AATT	1 cut(s)	148
TfiI	GAWTC	1 cut(s)	30
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	2 cut(s)	92, 216
TseI	GCWGC	1 cut(s)	195
TspDTI	ATGAA	1 cut(s)	22
TspRI	CASTG	2 cut(s)	92, 216
Tth111I	GACNNNGTC	1 cut(s)	80
Vha464I	CTTAAG	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	82
XmaJI	CCTAGG	1 cut(s)	163
XmiI	GTMKAC	1 cut(s)	223
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.