Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0009728

Physical Location & Seq

Genomic Coordinates Forward (+)

62275899 .. 62276150

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG345100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGCATTAACATTCATCAAATCCGTCAGCGTAGTCGAATACCTCGCTGCAATCCCCGCCAGCAAGTCCTCCGGGGTCGCCGACTCCAATGTCCAAACATGTCGTGACCGACGACTCGACGAGGTCCACCGCGTCTTCAAGAGCTTCGACTCCAACGGCGACTGCAAGATCTCAACCTCAGAGCTCGGCAATGTCCTCAAGGCCCTGGGCTCCAACGTCCCCGACGACGAGCTCCGCTGCTCCTCTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

83

Amino Acids

8.91

Weight (kDa)

5.69

Isoelectric Point (pI)

28.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_6	PF13405	42 - 70	9.3e-07	EF-hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009728)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G120900_v2.0.a1
rosa_multiflora	Rmu_co8404669.1_g000001 Rmu_sc0000408.1_g000003 Rmu_sc0000953.1_g000019 Rmu_sc0001010.1_g000054 Rmu_sc0001753.1_g000027 Rmu_sc0003722.1_g000055 Rmu_sc0006460.1_g000015 Rmu_sc0007652.1_g000001 Rmu_sc0011579.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131680
rosa_samantha	Rh1BG331000 Rh1CG345100 Rh1DG362400 Rh2CG012500 Rh3DG360200 Rh4AG205800 Rh4DG228400 Rh5CG327900 Rh7AG067100 Rh7CG080800 Rh7DG081400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
AccII	CGCG	1 cut(s)	132
AciI	CCGC	3 cut(s)	57, 130, 235
AflIII	ACRYGT	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	3 cut(s)	144, 184, 232
AluI	AGCT	3 cut(s)	144, 184, 232
Alw21I	GWGCWC	2 cut(s)	186, 234
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	2 cut(s)	47, 237
AspS9I	GGNCC	2 cut(s)	124, 202
AsuC2I	CCSGG	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	124
BanII	GRGCYC	3 cut(s)	186, 212, 234
BbsI	GAAGAC	1 cut(s)	127
Bbv12I	GWGCWC	2 cut(s)	186, 234
BbvI	GCAGC	2 cut(s)	34, 224
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	206
BcnI	CCSGG	1 cut(s)	73
BglII	AGATCT	1 cut(s)	168
BisI	GCNGC	2 cut(s)	48, 238
BlsI	GCNGC	2 cut(s)	49, 239
Bme1390I	CCNGG	2 cut(s)	73, 206
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	2 cut(s)	124, 202
BmiI	GGNNCC	1 cut(s)	211
BmrFI	CCNGG	2 cut(s)	73, 206
BpiI	GAAGAC	1 cut(s)	127
BpuEI	CTTGAG	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	73
BsaJI	CCNNGG	3 cut(s)	72, 204, 205
Bse3DI	GCAATG	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	3 cut(s)	72, 204, 205
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	232
BseXI	GCAGC	2 cut(s)	34, 224
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	203
BsiHKAI	GWGCWC	2 cut(s)	186, 234
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	203
Bsp1286I	GDGCHC	3 cut(s)	186, 212, 234
Bsp143I	GATC	1 cut(s)	168
BspACI	CCGC	3 cut(s)	57, 130, 235
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	191
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	211
BsrDI	GCAATG	1 cut(s)	196
BssECI	CCNNGG	3 cut(s)	72, 204, 205
BssMI	GATC	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	61
BstDEI	CTNAG	1 cut(s)	178
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	1 cut(s)	206
BstNSI	RCATGY	1 cut(s)	102
BstSCI	CCNGG	2 cut(s)	71, 204
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	34, 224
BstV2I	GAAGAC	1 cut(s)	127
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	61
Cfr13I	GGNCC	2 cut(s)	124, 202
CseI	GACGC	1 cut(s)	121
CviAII	CATG	1 cut(s)	99
CviJI	RGCY	5 cut(s)	144, 184, 203, 210, 232
CviKI_1	RGCY	5 cut(s)	144, 184, 203, 210, 232
DdeI	CTNAG	1 cut(s)	178
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
Ecl136II	GAGCTC	2 cut(s)	184, 232
Eco24I	GRGCYC	3 cut(s)	186, 212, 234
Eco47I	GGWCC	1 cut(s)	124
Eco53kI	GAGCTC	2 cut(s)	184, 232
EcoICRI	GAGCTC	2 cut(s)	184, 232
EcoO109I	RGGNCCY	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	204
EcoT38I	GRGCYC	3 cut(s)	186, 212, 234
FaeI	CATG	1 cut(s)	102
FaiI	YATR	1 cut(s)	100
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	1 cut(s)	98
FauI	CCCGC	1 cut(s)	64
Fnu4HI	GCNGC	2 cut(s)	48, 238
FriOI	GRGCYC	3 cut(s)	186, 212, 234
Fsp4HI	GCNGC	2 cut(s)	48, 238
GluI	GCNGC	2 cut(s)	48, 238
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	1 cut(s)	121
Hin1II	CATG	1 cut(s)	102
HinfI	GANTC	3 cut(s)	83, 114, 149
HpaII	CCGG	1 cut(s)	72
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	2 cut(s)	104, 139
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	4 cut(s)	114, 122, 227, 230
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	2 cut(s)	50, 165
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	1 cut(s)	178
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	1 cut(s)	102
Kzo9I	GATC	1 cut(s)	168
LmnI	GCTCC	3 cut(s)	215, 237, 245
LpnPI	CCDG	4 cut(s)	73, 85, 191, 218
Lsp1109I	GCAGC	2 cut(s)	34, 224
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MboII	GAAGA	1 cut(s)	127
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	3 cut(s)	186, 212, 234
MlyI	GAGTC	3 cut(s)	77, 108, 143
MmeI	TCCRAC	2 cut(s)	177, 237
MnlI	CCTC	5 cut(s)	53, 79, 115, 187, 206
MseI	TTAA	1 cut(s)	8
MspA1I	CMGCKG	1 cut(s)	237
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	2 cut(s)	73, 206
MvaI	CCWGG	1 cut(s)	206
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	56
NciI	CCSGG	1 cut(s)	73
NdeII	GATC	1 cut(s)	168
NlaIII	CATG	1 cut(s)	102
NlaIV	GGNNCC	1 cut(s)	211
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	1 cut(s)	102
PasI	CCCWGGG	1 cut(s)	205
PciI	ACATGT	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	2 cut(s)	109, 222
PflFI	GACNNNGTC	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	49, 239
PleI	GAGTC	3 cut(s)	77, 108, 143
PpsI	GAGTC	3 cut(s)	77, 108, 143
PscI	ACATGT	1 cut(s)	98
Psp124BI	GAGCTC	2 cut(s)	186, 234
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	2 cut(s)	124, 202
PsuI	RGATCY	1 cut(s)	168
PsyI	GACNNNGTC	1 cut(s)	122
SacI	GAGCTC	2 cut(s)	186, 234
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	2 cut(s)	48, 238
Sau3AI	GATC	1 cut(s)	168
Sau96I	GGNCC	2 cut(s)	124, 202
SchI	GAGTC	3 cut(s)	77, 108, 143
ScrFI	CCNGG	2 cut(s)	73, 206
SduI	GDGCHC	3 cut(s)	186, 212, 234
SetI	ASST	7 cut(s)	45, 126, 146, 179, 186, 219, 234
SinI	GGWCC	1 cut(s)	124
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SsiI	CCGC	3 cut(s)	57, 130, 235
SstI	GAGCTC	2 cut(s)	186, 234
StyD4I	CCNGG	2 cut(s)	71, 204
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	3 cut(s)	36, 117, 147
TaqII	GACCGA	1 cut(s)	123
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	2 cut(s)	47, 237
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	4
TspGWI	ACGGA	1 cut(s)	13
Tth111I	GACNNNGTC	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	124
XceI	RCATGY	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.