Prupe.2G199900_v2.0.a1

Domain of unknown function (DUF4283)

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
23712803 .. 23716092
3290 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G199900.1

Sequence Viewer

Length: 720 bp
ATGGAGGTTGAGCCTTTTCCTACTGTAGCGCCGAAACCTATAATGAATTTTCGTGAAAAGCTCATGAACCCAGGTGGGATCGGAGTGCATAAGGAGGATCTGGTGGGTATGGAGGAAGATAAACTCACAATAGAGGATGATGATTTTTTAGTCTCAGAGGGTACTCGTGGTCCTTGCATACGCTTTTGCACCAAGGTGAAGGAACGACTCTACCGTCCCTGGCGGAACGCAATTATAATCAAACTAATGGGCAGGACCCATACATATAGCTTCCTATTAGCTCGTCTAAGACAAAAATGGAGTCTTTTGAAAGGTGCAATGAGTTTGATTGACCTGGAAAACAACTTTTATGTTGTACGCTTTGTGCTTGAGGATGACATGAGGTACGTTTTTTCTAGGGAACCATGGGTAATTGCTGGGCAATCTTTAGTGATGCAGAGATGGAAACTAGGATTTGATCATAATTCTACTATTACTCGTATGGCTGTGTGGGTGCGTATTACAGGTTTACATGTTGAATGGTTTAATCCTGAGGCAATTAAACGTATTGGGGACCTTATTGGTGTGACTTATCGCATTGATACTCTCACAGTTGCTCAAGCCCGTGGCAAATACTCTCGAATCTGTATTGAATTGGATTTGACCAAACCGTTAATTGCTAATGTGCAAGTTGAGGTTAAAAGTCATGGAAACTTCTCTCTCTGGCTTCCCTCTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

240

Amino Acids

27.73

Weight (kDa)

9.11

Isoelectric Point (pI)

28.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 236
AasI GACNNNNNNGTC 1 cut(s) 213
AciI CCGC 1 cut(s) 223
AclWI GGATC 2 cut(s) 86, 105
AcsI RAATTY 1 cut(s) 46
AfaI GTAC 3 cut(s) 163, 357, 386
AflIII ACRYGT 1 cut(s) 511
AgsI TTSAA 3 cut(s) 310, 518, 632
AjnI CCWGG 3 cut(s) 70, 218, 333
AleI CACNNNNGTG 1 cut(s) 194
AluBI AGCT 3 cut(s) 61, 270, 281
AluI AGCT 3 cut(s) 61, 270, 281
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 2 cut(s) 86, 105
ApoI RAATTY 1 cut(s) 46
ArsI GACNNNNNNTTYG 2 cut(s) 286, 318
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 3 cut(s) 170, 255, 553
AsuHPI GGTGA 1 cut(s) 208
AvaII GGWCC 3 cut(s) 170, 255, 553
AxyI CCTNAGG 1 cut(s) 531
BauI CACGAG 1 cut(s) 165
BccI CCATC 1 cut(s) 435
BciT130I CCWGG 3 cut(s) 72, 220, 335
BclI TGATCA 1 cut(s) 457
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 2 cut(s) 396, 449
BfmI CTRYAG 1 cut(s) 24
BfoI RGCGCY 1 cut(s) 32
Bme1390I CCNGG 3 cut(s) 72, 220, 335
Bme18I GGWCC 3 cut(s) 170, 255, 553
BmgT120I GGNCC 3 cut(s) 170, 255, 553
BmiI GGNNCC 3 cut(s) 257, 402, 554
BmrFI CCNGG 3 cut(s) 72, 220, 335
BmsI GCATC 1 cut(s) 423
BpuEI CTTGAG 2 cut(s) 389, 582
BsaJI CCNNGG 5 cut(s) 70, 192, 218, 404, 604
Bse21I CCTNAGG 1 cut(s) 531
Bse3DI GCAATG 1 cut(s) 324
BseBI CCWGG 3 cut(s) 72, 220, 335
BseDI CCNNGG 5 cut(s) 70, 192, 218, 404, 604
BseGI GGATG 2 cut(s) 142, 379
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 2 cut(s) 168, 522
BseYI CCCAGC 1 cut(s) 416
BslFI GGGAC 2 cut(s) 201, 566
BsmAI GTCTC 1 cut(s) 157
BsmFI GGGAC 2 cut(s) 201, 566
Bsp143I GATC 3 cut(s) 78, 97, 457
Bsp19I CCATGG 1 cut(s) 404
BspACI CCGC 1 cut(s) 223
BspCNI CTCAG 2 cut(s) 167, 523
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 3 cut(s) 257, 402, 554
BspPI GGATC 2 cut(s) 86, 105
BsrDI GCAATG 1 cut(s) 324
BssECI CCNNGG 5 cut(s) 70, 192, 218, 404, 604
BssMI GATC 3 cut(s) 78, 97, 457
BssSI CACGAG 1 cut(s) 165
BssT1I CCWWGG 2 cut(s) 192, 404
Bst2BI CACGAG 1 cut(s) 165
Bst2UI CCWGG 3 cut(s) 72, 220, 335
Bst4CI ACNGT 4 cut(s) 25, 215, 592, 651
BstDEI CTNAG 3 cut(s) 154, 287, 531
BstDSI CCRYGG 2 cut(s) 404, 604
BstF5I GGATG 2 cut(s) 142, 379
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 3 cut(s) 81, 100, 460
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 3 cut(s) 78, 97, 457
BstNI CCWGG 3 cut(s) 72, 220, 335
BstNSI RCATGY 1 cut(s) 515
BstSCI CCNGG 3 cut(s) 70, 218, 333
BstSFI CTRYAG 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
Bsu36I CCTNAGG 1 cut(s) 531
BtgI CCRYGG 2 cut(s) 404, 604
BtsCI GGATG 2 cut(s) 142, 379
CciI TCATGA 1 cut(s) 63
CfoI GCGC 1 cut(s) 31
Cfr13I GGNCC 3 cut(s) 170, 255, 553
Csp6I GTAC 3 cut(s) 162, 356, 385
CviAII CATG 5 cut(s) 64, 379, 405, 512, 686
CviJI RGCY 7 cut(s) 13, 61, 270, 281, 485, 602, 706
CviKI_1 RGCY 7 cut(s) 13, 61, 270, 281, 485, 602, 706
CviQI GTAC 3 cut(s) 162, 356, 385
DdeI CTNAG 3 cut(s) 154, 287, 531
DpnI GATC 3 cut(s) 80, 99, 459
DpnII GATC 3 cut(s) 78, 97, 457
DrdI GACNNNNNNGTC 1 cut(s) 213
DseDI GACNNNNNNGTC 1 cut(s) 213
EciI GGCGGA 1 cut(s) 238
Eco130I CCWWGG 2 cut(s) 192, 404
Eco47I GGWCC 3 cut(s) 170, 255, 553
Eco81I CCTNAGG 1 cut(s) 531
EcoO109I RGGNCCY 2 cut(s) 255, 553
EcoRII CCWGG 3 cut(s) 70, 218, 333
EcoT14I CCWWGG 2 cut(s) 192, 404
ErhI CCWWGG 2 cut(s) 192, 404
FaeI CATG 5 cut(s) 67, 382, 408, 515, 689
FaqI GGGAC 2 cut(s) 201, 566
FatI CATG 5 cut(s) 63, 378, 404, 511, 685
FbaI TGATCA 1 cut(s) 457
FokI GGATG 2 cut(s) 149, 386
FspBI CTAG 2 cut(s) 396, 449
GlaI GCGC 1 cut(s) 30
GsaI CCCAGC 1 cut(s) 420
HaeII RGCGCY 1 cut(s) 32
HhaI GCGC 1 cut(s) 31
Hin1II CATG 5 cut(s) 67, 382, 408, 515, 689
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HinfI GANTC 3 cut(s) 207, 301, 621
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 1 cut(s) 509
Hpy188I TCNGA 2 cut(s) 83, 157
Hpy188III TCNNGA 4 cut(s) 53, 64, 530, 618
Hpy8I GTNNAC 1 cut(s) 509
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 4 cut(s) 25, 215, 592, 651
HpyCH4IV ACGT 2 cut(s) 387, 544
HpyCH4V TGCA 6 cut(s) 88, 177, 189, 317, 436, 667
HpyF3I CTNAG 3 cut(s) 154, 287, 531
HpySE526I ACGT 2 cut(s) 387, 544
Hsp92II CATG 5 cut(s) 67, 382, 408, 515, 689
HspAI GCGC 1 cut(s) 29
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 3 cut(s) 78, 97, 457
LweI GCATC 1 cut(s) 423
MaeI CTAG 2 cut(s) 396, 449
MaeII ACGT 2 cut(s) 387, 544
MaeIII GTNAC 1 cut(s) 565
MalI GATC 3 cut(s) 80, 99, 459
MboI GATC 3 cut(s) 78, 97, 457
MboII GAAGA 1 cut(s) 128
MflI RGATCY 1 cut(s) 97
MluCI AATT 7 cut(s) 46, 231, 411, 463, 537, 632, 654
MlyI GAGTC 2 cut(s) 201, 310
MnlI CCTC 8 cut(s) 88, 106, 127, 151, 364, 375, 526, 667
MseI TTAA 4 cut(s) 525, 540, 653, 678
MslI CAYNNNNRTG 1 cut(s) 194
MspR9I CCNGG 3 cut(s) 72, 220, 335
MvaI CCWGG 3 cut(s) 72, 220, 335
NcoI CCATGG 1 cut(s) 404
NdeII GATC 3 cut(s) 78, 97, 457
NlaIII CATG 5 cut(s) 67, 382, 408, 515, 689
NlaIV GGNNCC 3 cut(s) 257, 402, 554
NmuCI GTSAC 1 cut(s) 565
NspI RCATGY 1 cut(s) 515
OliI CACNNNNGTG 1 cut(s) 194
PagI TCATGA 1 cut(s) 63
PciI ACATGT 1 cut(s) 511
PcsI WCGNNNNNNNCGW 1 cut(s) 211
PfeI GAWTC 1 cut(s) 621
PleI GAGTC 2 cut(s) 201, 309
PpsI GAGTC 2 cut(s) 201, 309
PpuMI RGGWCCY 2 cut(s) 255, 553
PscI ACATGT 1 cut(s) 511
PsiI TTATAA 1 cut(s) 236
Psp5II RGGWCCY 2 cut(s) 255, 553
Psp6I CCWGG 3 cut(s) 70, 218, 333
PspFI CCCAGC 1 cut(s) 416
PspGI CCWGG 3 cut(s) 70, 218, 333
PspN4I GGNNCC 3 cut(s) 257, 402, 554
PspPI GGNCC 3 cut(s) 170, 255, 553
PspPPI RGGWCCY 2 cut(s) 255, 553
PsuI RGATCY 1 cut(s) 97
RsaI GTAC 3 cut(s) 163, 357, 386
RsaNI GTAC 3 cut(s) 162, 356, 385
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 4 cut(s) 525, 540, 653, 678
Sau3AI GATC 3 cut(s) 78, 97, 457
Sau96I GGNCC 3 cut(s) 170, 255, 553
SchI GAGTC 2 cut(s) 201, 310
ScrFI CCNGG 3 cut(s) 72, 220, 335
SfaNI GCATC 1 cut(s) 423
SfcI CTRYAG 1 cut(s) 24
SinI GGWCC 3 cut(s) 170, 255, 553
SmiMI CAYNNNNRTG 1 cut(s) 194
SmlI CTYRAG 2 cut(s) 368, 597
SmoI CTYRAG 2 cut(s) 368, 597
Sse9I AATT 7 cut(s) 46, 231, 411, 463, 537, 632, 654
SsiI CCGC 1 cut(s) 223
SspMI CTAG 2 cut(s) 396, 449
StyD4I CCNGG 3 cut(s) 70, 218, 333
StyI CCWWGG 2 cut(s) 192, 404
TaaI ACNGT 4 cut(s) 25, 215, 592, 651
TaiI ACGT 2 cut(s) 390, 547
TaqI TCGA 1 cut(s) 619
TasI AATT 7 cut(s) 46, 231, 411, 463, 537, 632, 654
TfiI GAWTC 1 cut(s) 621
Tru1I TTAA 4 cut(s) 525, 540, 653, 678
Tru9I TTAA 4 cut(s) 525, 540, 653, 678
TseFI GTSAC 1 cut(s) 565
Tsp45I GTSAC 1 cut(s) 565
TspDTI ATGAA 2 cut(s) 59, 80
VpaK11BI GGWCC 3 cut(s) 170, 255, 553
XapI RAATTY 1 cut(s) 46
XceI RCATGY 1 cut(s) 515
XspI CTAG 2 cut(s) 396, 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.