Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012042.1

Orthogroup ID

OG0016475

Physical Location & Seq

Genomic Coordinates Reverse (-)

22741 .. 23783

Gene Structure 1043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012042.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atggcatgtgggagatggcaaaacataaaattctggtatgatccttggctgctccctattgctcttatctctcatgctcttcctaatgctgtaattgatgacaatgccattgtttgcaattttttggatgattctggtaggaactttgatcttatgtcttccctgcttacttgtgttaaatcggcctacaacttgatatttgatttctcccctcccatcaaccctcactggaaaattgtttggcatcttaatattccccctaaacagaagacctttctatggactactcttcatatgaaattgtttaccaatgttcaaagagttagacgaggctctgctacttctagtacctactccatatgcaactctgcagatgaaacgctcctccatcttttcagagattgtcctcgagtgaaatacatctgtgatcggtgggtcttagccggcggtgaaacatgcccattggacggcggtgagggctggagtcgactggggagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

166

Amino Acids

19.04

Weight (kDa)

8.51

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07656
prunus_persica	Prupe.2G199900_v2.0.a1 Prupe.7G019600_v2.0.a1
pyrus_communis	pycom07g06830
rosa_chinensis	RchiOBHm_Chr2g0089011
rosa_multiflora	Rmu_co8469645.1_g000001 Rmu_sc0000927.1_g000013 Rmu_sc0001192.1_g000009 Rmu_sc0001947.1_g000005 Rmu_sc0004165.1_g000033 Rmu_sc0012042.1_g000003
rosa_rugosa	Rorug01G0073000 Rorug04G0155000 Rorug04G0186300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	487
AciI	CCGC	2 cut(s)	447, 471
AclWI	GGATC	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	29
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	2 cut(s)	279, 467
AgsI	TTSAA	1 cut(s)	317
AlwI	GGATC	1 cut(s)	35
Ama87I	CYCGRG	1 cut(s)	408
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	1 cut(s)	49
ApoI	RAATTY	1 cut(s)	29
AsuHPI	GGTGA	2 cut(s)	461, 485
AvaI	CYCGRG	1 cut(s)	408
BbsI	GAAGAC	2 cut(s)	150, 275
BbvI	GCAGC	1 cut(s)	36
BccI	CCATC	3 cut(s)	9, 224, 396
BceAI	ACGGC	1 cut(s)	484
BfaI	CTAG	1 cut(s)	345
BfmI	CTRYAG	1 cut(s)	369
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
BmeT110I	CYCGRG	1 cut(s)	408
BmrI	ACTGGG	1 cut(s)	500
BmsI	GCATC	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	500
BpiI	GAAGAC	2 cut(s)	150, 275
BsaJI	CCNNGG	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	2 cut(s)	279, 467
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	2 cut(s)	233, 495
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	2 cut(s)	279, 467
BseNI	ACTGG	2 cut(s)	233, 495
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	1 cut(s)	36
BshFI	GGCC	1 cut(s)	185
BsiHKCI	CYCGRG	1 cut(s)	408
BsiSI	CCGG	1 cut(s)	444
BslI	CCNNNNNNNGG	2 cut(s)	279, 467
BsnI	GGCC	1 cut(s)	185
BsoBI	CYCGRG	1 cut(s)	408
Bsp143I	GATC	3 cut(s)	40, 148, 427
BspACI	CCGC	2 cut(s)	447, 471
BspANI	GGCC	1 cut(s)	185
BspMAI	CTGCAG	1 cut(s)	373
BspPI	GGATC	1 cut(s)	35
BspQI	GCTCTTC	1 cut(s)	84
BsrFI	RCCGGY	1 cut(s)	443
BsrI	ACTGG	2 cut(s)	233, 495
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	3 cut(s)	40, 148, 427
BssT1I	CCWWGG	1 cut(s)	44
Bst6I	CTCTTC	2 cut(s)	84, 294
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	1 cut(s)	439
BstF5I	GGATG	1 cut(s)	133
BstKTI	GATC	3 cut(s)	43, 151, 430
BstMBI	GATC	3 cut(s)	40, 148, 427
BstMWI	GCNNNNNNNGC	1 cut(s)	477
BstNSI	RCATGY	2 cut(s)	9, 459
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	36
BstV2I	GAAGAC	2 cut(s)	150, 275
BsuRI	GGCC	1 cut(s)	185
BtsCI	GGATG	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	445
Cfr10I	RCCGGY	1 cut(s)	443
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	3 cut(s)	6, 74, 456
CviJI	RGCY	5 cut(s)	49, 185, 333, 443, 480
CviKI_1	RGCY	5 cut(s)	49, 185, 333, 443, 480
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	1 cut(s)	439
DpnI	GATC	3 cut(s)	42, 150, 429
DpnII	GATC	3 cut(s)	40, 148, 427
Eam1104I	CTCTTC	2 cut(s)	84, 294
EarI	CTCTTC	2 cut(s)	84, 294
Eco130I	CCWWGG	1 cut(s)	44
Eco88I	CYCGRG	1 cut(s)	408
EcoT14I	CCWWGG	1 cut(s)	44
ErhI	CCWWGG	1 cut(s)	44
FaeI	CATG	3 cut(s)	9, 77, 459
FatI	CATG	3 cut(s)	5, 73, 455
FauNDI	CATATG	2 cut(s)	294, 359
FblI	GTMKAC	1 cut(s)	487
Fnu4HI	GCNGC	1 cut(s)	50
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	50
FspBI	CTAG	1 cut(s)	345
GluI	GCNGC	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	1 cut(s)	444
Hin1II	CATG	3 cut(s)	9, 77, 459
HincII	GTYRAC	1 cut(s)	488
HindII	GTYRAC	1 cut(s)	488
HinfI	GANTC	2 cut(s)	131, 484
HpaII	CCGG	1 cut(s)	444
HphI	GGTGA	2 cut(s)	461, 485
Hpy166II	GTNNAC	2 cut(s)	306, 488
Hpy188I	TCNGA	1 cut(s)	398
Hpy8I	GTNNAC	2 cut(s)	306, 488
HpyCH4V	TGCA	3 cut(s)	117, 363, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	477
HpyF3I	CTNAG	1 cut(s)	439
Hsp92II	CATG	3 cut(s)	9, 77, 459
KroI	GCCGGC	1 cut(s)	443
KroNI	GCCGGC	1 cut(s)	445
Kzo9I	GATC	3 cut(s)	40, 148, 427
LguI	GCTCTTC	1 cut(s)	84
LmnI	GCTCC	2 cut(s)	57, 387
LpnPI	CCDG	7 cut(s)	19, 120, 176, 214, 457, 466, 476
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	345
MalI	GATC	3 cut(s)	42, 150, 429
MboI	GATC	3 cut(s)	40, 148, 427
MboII	GAAGA	4 cut(s)	71, 150, 280, 281
MluCI	AATT	5 cut(s)	29, 93, 118, 234, 299
MlyI	GAGTC	1 cut(s)	493
MnlI	CCTC	6 cut(s)	222, 234, 323, 395, 417, 469
MroNI	GCCGGC	1 cut(s)	443
MseI	TTAA	2 cut(s)	177, 249
MspI	CCGG	1 cut(s)	444
MwoI	GCNNNNNNNGC	1 cut(s)	477
NaeI	GCCGGC	1 cut(s)	445
NdeI	CATATG	2 cut(s)	294, 359
NdeII	GATC	3 cut(s)	40, 148, 427
NgoMIV	GCCGGC	1 cut(s)	443
NlaIII	CATG	3 cut(s)	9, 77, 459
NspI	RCATGY	2 cut(s)	9, 459
PaeR7I	CTCGAG	1 cut(s)	408
PciSI	GCTCTTC	1 cut(s)	84
PdiI	GCCGGC	1 cut(s)	445
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	1 cut(s)	51
PleI	GAGTC	1 cut(s)	492
PpsI	GAGTC	1 cut(s)	492
PspXI	VCTCGAGB	1 cut(s)	408
PstI	CTGCAG	1 cut(s)	373
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
SalI	GTCGAC	1 cut(s)	486
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	2 cut(s)	177, 249
SatI	GCNGC	1 cut(s)	50
Sau3AI	GATC	3 cut(s)	40, 148, 427
SchI	GAGTC	1 cut(s)	493
SetI	ASST	2 cut(s)	275, 353
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	369
Sfr274I	CTCGAG	1 cut(s)	408
SlaI	CTCGAG	1 cut(s)	408
SmlI	CTYRAG	1 cut(s)	408
SmoI	CTYRAG	1 cut(s)	408
Sse9I	AATT	5 cut(s)	29, 93, 118, 234, 299
SsiI	CCGC	2 cut(s)	447, 471
SspI	AATATT	1 cut(s)	253
SspMI	CTAG	1 cut(s)	345
StyI	CCWWGG	1 cut(s)	44
TaqI	TCGA	2 cut(s)	409, 487
TasI	AATT	5 cut(s)	29, 93, 118, 234, 299
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	2 cut(s)	177, 249
Tru9I	TTAA	2 cut(s)	177, 249
TscAI	CASTG	1 cut(s)	233
TseI	GCWGC	1 cut(s)	49
TspDTI	ATGAA	3 cut(s)	281, 311, 390
TspRI	CASTG	1 cut(s)	233
XapI	RAATTY	1 cut(s)	29
XceI	RCATGY	2 cut(s)	9, 459
XhoI	CTCGAG	1 cut(s)	408
XmiI	GTMKAC	1 cut(s)	487
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.