Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0016475

Physical Location & Seq

Genomic Coordinates Forward (+)

27112076 .. 27115169

Gene Structure 3094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0155000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGAAATTCAATGCAAGTGATATTATGAAGACAAGTAATATTGATCAGAGAGAAGATGAGTATTGTGTCAGACTAAGATCAATTGGTGCTTATCAAAATGAACTTAGTACCAAAAAAGATGATCCTATATGCAAAAGCAGCAACAAGGAAAAGTCTGTTGCTGCCGTACTTTCCCATTCATCGGAGAAGGAACACCATATTGATAATCAGGAGTATAGATGGTCTGGTTCCTTTCATCTCTCACTTGATGAACACAAGAATGTACACACAGATTTGATGGATGAAAAAGTAGCGACTCGACTACTTAGTTCAGCTACGAATGATGCAAAACCAAGAGAGTCGTTGTGTGATGACTCAACAAGTTGTGGAAACTCTTCAGCTCCTCTTAGCAGCACACCTAGTTCCTCTCAGATTTTAGATTTGGAGAGAATAGGTTACCAAGTATCTTTGTTGAATCTTGATGGGGATGATTACAAATGGATTCCAGATACAGAAGTTGAGTCATATTGTCTTCAATATGCGTTTCACTCTCCATCATACAAGACTAGGTCGGATCACGAAGCTGAGTTCTCTAATTCTTGTATTTCTACAGCCACTGAAGCACAAAATGAAAAACCAGGATATTGTTTTCCATCAGAACAAGCTTCAAAAGCTGTAGAGGTTGAAGAGTCGAATACAAATGAACCTCTTTTTTGGCCATTTGCTCAAAAAATTGATTGGAGTGCCGAAGCAACTTGGAACTGTTTTTCCATGTCACCGCGGAAGAGCATAGCAACTATTGGAACTCCACTTGATTCAATTATATTAAGGCGTTATAGGGGCAGCATGGATCTCAAACAAGAGCGTAGGAGAAAACTAGTGTTTAGCTTAGGATCAACAACATCAAAGATACCAGATATGAAGCAAAGCTACACCAAGGGTATCAAGGATATCCGAGAGATCTGTAATGCCCCTTCGAGGTTGAGCAGGGTAACCAAAAGGACTGAAAAAGAGAATATTTTAGAACACAAAAATCAAAAAGTAACTATCAAAAACCCAGTTGTTATGGCTGAAGATATCATGGAAGAAGATTTTGAATCAAAACAACTTGGGATTGAGATGTTCTTGGGCCTTGATGAGTTTGATGGTCACGAGGGAATTGATTCAACATTTAACAAAGATGATTTCTCACTGAACATATCTTTCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

396

Amino Acids

44.97

Weight (kDa)

5.19

Isoelectric Point (pI)

50.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07656
prunus_persica	Prupe.2G199900_v2.0.a1 Prupe.7G019600_v2.0.a1
pyrus_communis	pycom07g06830
rosa_chinensis	RchiOBHm_Chr2g0089011
rosa_multiflora	Rmu_co8469645.1_g000001 Rmu_sc0000927.1_g000013 Rmu_sc0001192.1_g000009 Rmu_sc0001947.1_g000005 Rmu_sc0004165.1_g000033 Rmu_sc0012042.1_g000003
rosa_rugosa	Rorug01G0073000 Rorug04G0155000 Rorug04G0186300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	760
AciI	CCGC	2 cut(s)	758, 760
AclWI	GGATC	4 cut(s)	116, 561, 837, 880
AcoI	YGGCCR	1 cut(s)	695
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	3 cut(s)	360, 618, 1071
AfaI	GTAC	3 cut(s)	109, 168, 264
AfiI	CCNNNNNNNGG	2 cut(s)	181, 957
AgsI	TTSAA	8 cut(s)	10, 454, 515, 648, 665, 798, 1076, 1146
AhlI	ACTAGT	1 cut(s)	856
AjnI	CCWGG	1 cut(s)	616
AloI	GAACNNNNNNTCC	2 cut(s)	731, 763
AluBI	AGCT	7 cut(s)	314, 380, 563, 644, 653, 867, 909
AluI	AGCT	7 cut(s)	314, 380, 563, 644, 653, 867, 909
AlwI	GGATC	4 cut(s)	116, 561, 837, 880
AlwNI	CAGNNNCTG	1 cut(s)	596
AoxI	GGCC	2 cut(s)	695, 1108
ApeKI	GCWGC	4 cut(s)	138, 161, 390, 822
ApoI	RAATTY	1 cut(s)	5
Asp700I	GAANNNNTTC	2 cut(s)	373, 1141
AspS9I	GGNCC	1 cut(s)	1108
AsuHPI	GGTGA	1 cut(s)	747
BaeI	ACNNNNGTAYC	2 cut(s)	480, 513
BalI	TGGCCA	1 cut(s)	697
BarI	GAAGNNNNNNTAC	4 cut(s)	893, 925, 937, 969
BauI	CACGAG	1 cut(s)	1130
BbsI	GAAGAC	2 cut(s)	35, 503
BbvI	GCAGC	4 cut(s)	148, 150, 402, 834
BccI	CCATC	6 cut(s)	213, 271, 455, 541, 640, 1118
BceAI	ACGGC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	618
BclI	TGATCA	1 cut(s)	43
BcuI	ACTAGT	1 cut(s)	856
BfaI	CTAG	3 cut(s)	399, 546, 857
BfmI	CTRYAG	2 cut(s)	588, 654
BglII	AGATCT	1 cut(s)	939
BisI	GCNGC	4 cut(s)	139, 162, 391, 823
BlsI	GCNGC	4 cut(s)	140, 163, 392, 824
Bme1390I	CCNGG	1 cut(s)	618
BmgT120I	GGNCC	1 cut(s)	1108
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	1 cut(s)	618
BmrI	ACTGGG	1 cut(s)	1031
BmsI	GCATC	1 cut(s)	313
BmuI	ACTGGG	1 cut(s)	1031
BpiI	GAAGAC	2 cut(s)	35, 503
Bpu10I	CCTNAGC	1 cut(s)	868
BsaJI	CCNNGG	2 cut(s)	758, 915
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 957
Bse1I	ACTGG	1 cut(s)	1037
BseBI	CCWGG	1 cut(s)	618
BseDI	CCNNGG	2 cut(s)	758, 915
BseGI	GGATG	2 cut(s)	286, 472
BseLI	CCNNNNNNNGG	2 cut(s)	181, 957
BseMII	CTCAG	2 cut(s)	422, 555
BseNI	ACTGG	1 cut(s)	1037
BseRI	GAGGAG	1 cut(s)	372
BseXI	GCAGC	4 cut(s)	148, 150, 402, 834
Bsh1236I	CGCG	1 cut(s)	760
BshFI	GGCC	2 cut(s)	697, 1110
BslI	CCNNNNNNNGG	2 cut(s)	181, 957
BsnI	GGCC	2 cut(s)	697, 1110
Bsp1407I	TGTACA	1 cut(s)	262
Bsp143I	GATC	7 cut(s)	43, 77, 121, 553, 829, 872, 939
BspACI	CCGC	2 cut(s)	758, 760
BspANI	GGCC	2 cut(s)	697, 1110
BspCNI	CTCAG	2 cut(s)	421, 556
BspFNI	CGCG	1 cut(s)	760
BspLI	GGNNCC	1 cut(s)	229
BspPI	GGATC	4 cut(s)	116, 561, 837, 880
BspQI	GCTCTTC	1 cut(s)	758
BsrGI	TGTACA	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	1037
BssECI	CCNNGG	2 cut(s)	758, 915
BssMI	GATC	7 cut(s)	43, 77, 121, 553, 829, 872, 939
BssSI	CACGAG	1 cut(s)	1130
BssT1I	CCWWGG	1 cut(s)	915
Bst2BI	CACGAG	1 cut(s)	1130
Bst2UI	CCWGG	1 cut(s)	618
Bst4CI	ACNGT	1 cut(s)	743
Bst6I	CTCTTC	3 cut(s)	379, 660, 758
BstAUI	TGTACA	1 cut(s)	262
BstDEI	CTNAG	7 cut(s)	74, 104, 305, 386, 408, 564, 868
BstDSI	CCRYGG	1 cut(s)	758
BstEII	GGTNACC	2 cut(s)	434, 970
BstF5I	GGATG	2 cut(s)	286, 472
BstFNI	CGCG	1 cut(s)	760
BstKTI	GATC	7 cut(s)	46, 80, 124, 556, 832, 875, 942
BstMBI	GATC	7 cut(s)	43, 77, 121, 553, 829, 872, 939
BstMWI	GCNNNNNNNGC	3 cut(s)	138, 599, 650
BstNI	CCWGG	1 cut(s)	618
BstPI	GGTNACC	2 cut(s)	434, 970
BstSCI	CCNGG	1 cut(s)	616
BstSFI	CTRYAG	2 cut(s)	588, 654
BstUI	CGCG	1 cut(s)	760
BstV1I	GCAGC	4 cut(s)	148, 150, 402, 834
BstV2I	GAAGAC	2 cut(s)	35, 503
BstX2I	RGATCY	2 cut(s)	829, 939
BstYI	RGATCY	2 cut(s)	829, 939
BsuRI	GGCC	2 cut(s)	697, 1110
BtgI	CCRYGG	1 cut(s)	758
BtsCI	GGATG	2 cut(s)	286, 472
BtsIMutI	CAGTG	2 cut(s)	594, 1169
CaiI	CAGNNNCTG	1 cut(s)	596
Cfr13I	GGNCC	1 cut(s)	1108
Cfr42I	CCGCGG	1 cut(s)	761
Csp6I	GTAC	3 cut(s)	108, 167, 263
CviAII	CATG	3 cut(s)	751, 826, 1060
CviQI	GTAC	3 cut(s)	108, 167, 263
DdeI	CTNAG	7 cut(s)	74, 104, 305, 386, 408, 564, 868
DpnI	GATC	7 cut(s)	45, 79, 123, 555, 831, 874, 941
DpnII	GATC	7 cut(s)	43, 77, 121, 553, 829, 872, 939
EaeI	YGGCCR	1 cut(s)	695
Eam1104I	CTCTTC	3 cut(s)	379, 660, 758
EarI	CTCTTC	3 cut(s)	379, 660, 758
Eco130I	CCWWGG	1 cut(s)	915
Eco32I	GATATC	2 cut(s)	931, 1057
Eco57I	CTGAAG	3 cut(s)	360, 618, 1071
Eco91I	GGTNACC	2 cut(s)	434, 970
EcoO65I	GGTNACC	2 cut(s)	434, 970
EcoRII	CCWGG	1 cut(s)	616
EcoRV	GATATC	2 cut(s)	931, 1057
EcoT14I	CCWWGG	1 cut(s)	915
ErhI	CCWWGG	1 cut(s)	915
FaeI	CATG	3 cut(s)	754, 829, 1063
FatI	CATG	3 cut(s)	750, 825, 1059
FbaI	TGATCA	1 cut(s)	43
Fnu4HI	GCNGC	4 cut(s)	139, 162, 391, 823
FokI	GGATG	2 cut(s)	293, 479
Fsp4HI	GCNGC	4 cut(s)	139, 162, 391, 823
FspBI	CTAG	3 cut(s)	399, 546, 857
GluI	GCNGC	4 cut(s)	139, 162, 391, 823
HaeIII	GGCC	2 cut(s)	697, 1110
Hin1II	CATG	3 cut(s)	754, 829, 1063
HindIII	AAGCTT	1 cut(s)	642
HphI	GGTGA	1 cut(s)	747
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	7 cut(s)	48, 71, 184, 411, 553, 637, 935
Hpy188III	TCNNGA	5 cut(s)	209, 458, 485, 557, 1130
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	2 cut(s)	181, 963
HpyCH4III	ACNGT	1 cut(s)	743
HpyCH4V	TGCA	3 cut(s)	14, 132, 326
HpyF10VI	GCNNNNNNNGC	3 cut(s)	138, 599, 650
HpyF3I	CTNAG	7 cut(s)	74, 104, 305, 386, 408, 564, 868
Hsp92II	CATG	3 cut(s)	754, 829, 1063
Ksp22I	TGATCA	1 cut(s)	43
KspI	CCGCGG	1 cut(s)	761
Kzo9I	GATC	7 cut(s)	43, 77, 121, 553, 829, 872, 939
LguI	GCTCTTC	1 cut(s)	758
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	8 cut(s)	194, 210, 498, 603, 630, 906, 952, 1050
Lsp1109I	GCAGC	4 cut(s)	148, 150, 402, 834
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	3 cut(s)	399, 546, 857
MaeIII	GTNAC	5 cut(s)	434, 753, 970, 1021, 1127
MalI	GATC	7 cut(s)	45, 79, 123, 555, 831, 874, 941
MboI	GATC	7 cut(s)	43, 77, 121, 553, 829, 872, 939
MboII	GAAGA	9 cut(s)	40, 65, 366, 503, 677, 775, 1064, 1076, 1079
MfeI	CAATTG	1 cut(s)	81
MflI	RGATCY	2 cut(s)	829, 939
MlsI	TGGCCA	1 cut(s)	697
MluCI	AATT	6 cut(s)	5, 81, 574, 711, 798, 1137
MluNI	TGGCCA	1 cut(s)	697
MlyI	GAGTC	5 cut(s)	289, 347, 347, 509, 677
MmeI	TCCRAC	1 cut(s)	531
MnlI	CCTC	6 cut(s)	393, 415, 652, 696, 951, 1126
Mox20I	TGGCCA	1 cut(s)	697
MroXI	GAANNNNTTC	2 cut(s)	373, 1141
MscI	TGGCCA	1 cut(s)	697
MseI	TTAA	2 cut(s)	806, 1152
MslI	CAYNNNNRTG	1 cut(s)	258
Msp20I	TGGCCA	1 cut(s)	697
MspA1I	CMGCKG	1 cut(s)	760
MspR9I	CCNGG	1 cut(s)	618
MunI	CAATTG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	618
MvnI	CGCG	1 cut(s)	760
MwoI	GCNNNNNNNGC	3 cut(s)	138, 599, 650
NdeII	GATC	7 cut(s)	43, 77, 121, 553, 829, 872, 939
NlaIII	CATG	3 cut(s)	754, 829, 1063
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	2 cut(s)	753, 1127
PciSI	GCTCTTC	1 cut(s)	758
PdmI	GAANNNNTTC	2 cut(s)	373, 1141
PfeI	GAWTC	5 cut(s)	454, 481, 794, 1076, 1142
PflFI	GACNNNGTC	1 cut(s)	547
PkrI	GCNGC	4 cut(s)	140, 163, 392, 824
PleI	GAGTC	5 cut(s)	289, 346, 347, 508, 676
PpsI	GAGTC	5 cut(s)	289, 346, 347, 508, 676
Psp6I	CCWGG	1 cut(s)	616
PspEI	GGTNACC	2 cut(s)	434, 970
PspGI	CCWGG	1 cut(s)	616
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	1108
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	2 cut(s)	829, 939
PsyI	GACNNNGTC	1 cut(s)	547
RsaI	GTAC	3 cut(s)	109, 168, 264
RsaNI	GTAC	3 cut(s)	108, 167, 263
RseI	CAYNNNNRTG	1 cut(s)	258
SacII	CCGCGG	1 cut(s)	761
SapI	GCTCTTC	1 cut(s)	758
SaqAI	TTAA	2 cut(s)	806, 1152
SatI	GCNGC	4 cut(s)	139, 162, 391, 823
Sau3AI	GATC	7 cut(s)	43, 77, 121, 553, 829, 872, 939
Sau96I	GGNCC	1 cut(s)	1108
SchI	GAGTC	5 cut(s)	289, 347, 347, 509, 677
ScrFI	CCNGG	1 cut(s)	618
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	2 cut(s)	588, 654
Sfr303I	CCGCGG	1 cut(s)	761
SgrBI	CCGCGG	1 cut(s)	761
SmiMI	CAYNNNNRTG	1 cut(s)	258
SpeI	ACTAGT	1 cut(s)	856
Sse9I	AATT	6 cut(s)	5, 81, 574, 711, 798, 1137
SsiI	CCGC	2 cut(s)	758, 760
SspI	AATATT	2 cut(s)	40, 997
SspMI	CTAG	3 cut(s)	399, 546, 857
StyD4I	CCNGG	1 cut(s)	616
StyI	CCWWGG	1 cut(s)	915
TaaI	ACNGT	1 cut(s)	743
TaqI	TCGA	3 cut(s)	298, 671, 956
TasI	AATT	6 cut(s)	5, 81, 574, 711, 798, 1137
TatI	WGTACW	1 cut(s)	262
TfiI	GAWTC	5 cut(s)	454, 481, 794, 1076, 1142
Tru1I	TTAA	2 cut(s)	806, 1152
Tru9I	TTAA	2 cut(s)	806, 1152
TscAI	CASTG	2 cut(s)	601, 1176
TseFI	GTSAC	2 cut(s)	753, 1127
TseI	GCWGC	4 cut(s)	138, 161, 390, 822
Tsp45I	GTSAC	2 cut(s)	753, 1127
TspRI	CASTG	2 cut(s)	601, 1176
Tth111I	GACNNNGTC	1 cut(s)	547
XapI	RAATTY	1 cut(s)	5
XmnI	GAANNNNTTC	2 cut(s)	373, 1141
XspI	CTAG	3 cut(s)	399, 546, 857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.