Rmu_co8469645.1_g000001

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8469645.1
OG0016475
Physical Location & Seq
Forward (+)
1 .. 625
625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8469645.1_g000001.1.cds

Sequence Viewer

Length: 373 bp
agagattagtgctatttgtggttctcctttaacggacaacttagagaaagactttggaatgcctttgctgcattctagagtgtctaaaaacacttatatggagatcattgagaaagtgaatgataggttggcgtcctggaagagcaaagggttatccatggccggaagactaaccttgatccagtctgtaacttcttccattcccacctatgttatgcaaactgctaggccccctactagtgtttgtggggaattggataagttgaacaggaactttttatggggagacactgagagaaggcataaagtccacctctgtcagtggaacctcgtttgcagacctaagtgcaaggggcttgaaaagggcaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

123

Amino Acids

13.89

Weight (kDa)

9.25

Isoelectric Point (pI)

39.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 173
AcoI YGGCCR 1 cut(s) 160
AcyI GRCGYC 1 cut(s) 132
AgsI TTSAA 2 cut(s) 266, 360
AhlI ACTAGT 1 cut(s) 237
AjnI CCWGG 1 cut(s) 135
AjuI GAANNNNNNNTTGG 2 cut(s) 111, 143
Alw26I GTCTC 1 cut(s) 280
AlwI GGATC 1 cut(s) 173
AoxI GGCC 2 cut(s) 160, 228
ApeKI GCWGC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 55
BciT130I CCWGG 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 280
BcuI ACTAGT 1 cut(s) 237
BfaI CTAG 3 cut(s) 76, 226, 238
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 229
BmiI GGNNCC 2 cut(s) 231, 327
BmrFI CCNGG 1 cut(s) 137
BpiI GAAGAC 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 157
Bse1I ACTGG 1 cut(s) 182
BseBI CCWGG 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 283
BseNI ACTGG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 55
BshFI GGCC 2 cut(s) 162, 230
BsiSI CCGG 1 cut(s) 163
BsmAI GTCTC 1 cut(s) 280
BsmI GAATGC 2 cut(s) 64, 71
BsnI GGCC 2 cut(s) 162, 230
Bsp143I GATC 2 cut(s) 103, 178
Bsp19I CCATGG 1 cut(s) 157
BspANI GGCC 2 cut(s) 162, 230
BspCNI CTCAG 1 cut(s) 284
BspLI GGNNCC 2 cut(s) 231, 327
BspPI GGATC 1 cut(s) 173
BspQI GCTCTTC 1 cut(s) 135
BsrI ACTGG 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 2 cut(s) 103, 178
BssNI GRCGYC 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 137
Bst6I CTCTTC 1 cut(s) 135
BstACI GRCGYC 1 cut(s) 132
BstDEI CTNAG 3 cut(s) 41, 292, 343
BstDSI CCRYGG 1 cut(s) 157
BstKTI GATC 2 cut(s) 106, 181
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 2 cut(s) 103, 178
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 173
BsuRI GGCC 2 cut(s) 162, 230
BtgI CCRYGG 1 cut(s) 157
BtsIMutI CAGTG 2 cut(s) 289, 327
Cfr13I GGNCC 1 cut(s) 229
CseI GACGC 1 cut(s) 121
CviAII CATG 1 cut(s) 158
CviJI RGCY 3 cut(s) 162, 230, 356
CviKI_1 RGCY 3 cut(s) 162, 230, 356
DdeI CTNAG 3 cut(s) 41, 292, 343
DpnI GATC 2 cut(s) 105, 180
DpnII GATC 2 cut(s) 103, 178
EaeI YGGCCR 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco130I CCWWGG 1 cut(s) 157
EcoO109I RGGNCCY 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 1 cut(s) 161
FaiI YATR 7 cut(s) 97, 99, 159, 211, 216, 281, 304
FatI CATG 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 3 cut(s) 76, 226, 238
GluI GCNGC 1 cut(s) 69
HaeIII GGCC 2 cut(s) 162, 230
HapII CCGG 1 cut(s) 163
HgaI GACGC 1 cut(s) 121
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 1 cut(s) 161
HpaII CCGG 1 cut(s) 163
Hpy166II GTNNAC 1 cut(s) 311
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 311
HpyAV CCTTC 1 cut(s) 292
HpyCH4V TGCA 4 cut(s) 71, 218, 337, 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 3 cut(s) 41, 292, 343
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 1 cut(s) 161
Kzo9I GATC 2 cut(s) 103, 178
LguI GCTCTTC 1 cut(s) 135
LpnPI CCDG 5 cut(s) 122, 149, 176, 195, 254
Lsp1109I GCAGC 1 cut(s) 55
MaeI CTAG 3 cut(s) 76, 226, 238
MaeIII GTNAC 1 cut(s) 188
MalI GATC 2 cut(s) 105, 180
MboI GATC 2 cut(s) 103, 178
MboII GAAGA 3 cut(s) 152, 178, 187
MluCI AATT 1 cut(s) 252
MnlI CCTC 2 cut(s) 324, 339
MseI TTAA 1 cut(s) 30
MslI CAYNNNNRTG 1 cut(s) 96
MspI CCGG 1 cut(s) 163
MspR9I CCNGG 1 cut(s) 137
Mva1269I GAATGC 2 cut(s) 64, 71
MvaI CCWGG 1 cut(s) 137
MwoI GCNNNNNNNGC 1 cut(s) 68
NcoI CCATGG 1 cut(s) 157
NdeII GATC 2 cut(s) 103, 178
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 2 cut(s) 231, 327
PciSI GCTCTTC 1 cut(s) 135
PctI GAATGC 2 cut(s) 64, 71
PfoI TCCNGGA 1 cut(s) 135
PkrI GCNGC 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 135
PspGI CCWGG 1 cut(s) 135
PspN4I GGNNCC 2 cut(s) 231, 327
PspPI GGNCC 1 cut(s) 229
RseI CAYNNNNRTG 1 cut(s) 96
SapI GCTCTTC 1 cut(s) 135
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 2 cut(s) 103, 178
Sau96I GGNCC 1 cut(s) 229
ScrFI CCNGG 1 cut(s) 137
SetI ASST 6 cut(s) 129, 177, 210, 316, 331, 344
SmiMI CAYNNNNRTG 1 cut(s) 96
SpeI ACTAGT 1 cut(s) 237
Sse9I AATT 1 cut(s) 252
SspMI CTAG 3 cut(s) 76, 226, 238
StyD4I CCNGG 1 cut(s) 135
StyI CCWWGG 1 cut(s) 157
TasI AATT 1 cut(s) 252
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TscAI CASTG 2 cut(s) 296, 327
TseI GCWGC 1 cut(s) 68
TspGWI ACGGA 1 cut(s) 48
TspRI CASTG 2 cut(s) 296, 327
XbaI TCTAGA 1 cut(s) 75
XspI CTAG 3 cut(s) 76, 226, 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.