Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004165.1

Orthogroup ID

OG0016475

Physical Location & Seq

Genomic Coordinates Reverse (-)

103604 .. 105130

Gene Structure 1527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004165.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atggctgggagactcactgtaattcaatcagttacaactggcgtaccagtttatactatgcaatcagtaagacttcctatgtccatttgtaatactcttgatcgattgaacatgaactttctctggggacacactgcagaacagaagaaaactcatcttgtgaagtgggatacggtctgtaaacctaaatggtatggtgggttgggattgaagaagacatgtatgatgaatcaggcgttgttagccaaaactggatggaggcttctacaacaggaacaagggttgtgggctcaagctttgaataaaaaatatcttaaagatgattgcattatgcagaagctctcatcacattttccttctagttctagtacatggaaaggcatcctttatggcaacaggaacaagggaggtattcgaagtggtgatgacacgatcatatggaggttatctcagaatggtaatttttctgttaaatctgcttatcactctctatttttgaatttggaatctcaaccatggccatggaactttatttggaagcttcaagttcctcctaaggtgaaaacctttttatggacccttgtgcatgacagattgttaacgaatgaagtcagggttcgtagaggtttggctatagatactcgttgtctaaggtgcggcttcccgcttgaatccttggaccatctcttcaaagattgcactatttctatgagtatctggtctgccctccatcctacaagtgagttctcttccacttacaccattccctttaatgattggttgcttatcaatttaaagtcctctgtgagaatgcaatatgacgttccttggtgttgctattttggtatggggctttggtatatatggaaatggaggtgcagaatcatattggatcatacttttaaattgccagtttggccttctttaattattcatcagtttaccagagaatattttgaagcaaataagattacacatgctaaaccttcacgacaggtggctaatctgtgttggcattttccgcctcaggattggctcaaattaaatgttgatggcagtttgcataaaaatactgggattatatgtgctggaggagcccttcgaaatgatgagggtgaatggatgaatgggttttctgccaagttgggtagtggtcaagttgttgaagctgaactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

392

Amino Acids

45.31

Weight (kDa)

9.45

Isoelectric Point (pI)

34.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07656
prunus_persica	Prupe.2G199900_v2.0.a1 Prupe.7G019600_v2.0.a1
pyrus_communis	pycom07g06830
rosa_chinensis	RchiOBHm_Chr2g0089011
rosa_multiflora	Rmu_co8469645.1_g000001 Rmu_sc0000927.1_g000013 Rmu_sc0001192.1_g000009 Rmu_sc0001947.1_g000005 Rmu_sc0004165.1_g000033 Rmu_sc0012042.1_g000003
rosa_rugosa	Rorug01G0073000 Rorug04G0155000 Rorug04G0186300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	657, 665, 1022
AclWI	GGATC	1 cut(s)	900
AcoI	YGGCCR	1 cut(s)	518
AcsI	RAATTY	1 cut(s)	499
AfaI	GTAC	2 cut(s)	45, 370
AfiI	CCNNNNNNNGG	1 cut(s)	573
AflIII	ACRYGT	1 cut(s)	218
AluBI	AGCT	4 cut(s)	296, 340, 541, 1169
AluI	AGCT	4 cut(s)	296, 340, 541, 1169
Alw26I	GTCTC	1 cut(s)	4
AlwI	GGATC	1 cut(s)	900
AoxI	GGCC	2 cut(s)	518, 917
ApoI	RAATTY	1 cut(s)	499
AspS9I	GGNCC	2 cut(s)	576, 679
AsuHPI	GGTGA	3 cut(s)	434, 571, 1127
AsuII	TTCGAA	2 cut(s)	415, 1102
AvaII	GGWCC	2 cut(s)	576, 679
AxyI	CCTNAGG	2 cut(s)	555, 1026
BaeI	ACNNNNGTAYC	2 cut(s)	27, 60
BalI	TGGCCA	1 cut(s)	520
BanII	GRGCYC	2 cut(s)	292, 1099
BbsI	GAAGAC	1 cut(s)	221
BccI	CCATC	4 cut(s)	249, 690, 738, 1046
BciVI	GTATCC	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	4
BfaI	CTAG	2 cut(s)	360, 366
BfmI	CTRYAG	2 cut(s)	135, 633
BfuI	GTATCC	1 cut(s)	163
BglI	GCCNNNNNGGC	1 cut(s)	916
BisI	GCNGC	1 cut(s)	658
BlsI	GCNGC	1 cut(s)	659
Bme18I	GGWCC	2 cut(s)	576, 679
BmgT120I	GGNCC	2 cut(s)	576, 679
BmiI	GGNNCC	2 cut(s)	578, 1096
BmrI	ACTGGG	1 cut(s)	1083
BmsI	GCATC	1 cut(s)	390
BmuI	ACTGGG	1 cut(s)	1083
BpiI	GAAGAC	1 cut(s)	221
BplI	GAGNNNNNCTC	2 cut(s)	433, 465
BpmI	CTGGAG	1 cut(s)	1110
Bpu14I	TTCGAA	2 cut(s)	415, 1102
BpuEI	CTTGAG	1 cut(s)	276
Bsa29I	ATCGAT	1 cut(s)	103
BsaJI	CCNNGG	4 cut(s)	515, 521, 675, 827
Bsc4I	CCNNNNNNNGG	1 cut(s)	573
Bse1I	ACTGG	5 cut(s)	43, 47, 256, 911, 1078
Bse21I	CCTNAGG	2 cut(s)	555, 1026
BseCI	ATCGAT	1 cut(s)	103
BseDI	CCNNGG	4 cut(s)	515, 521, 675, 827
BseGI	GGATG	4 cut(s)	260, 381, 730, 1128
BseLI	CCNNNNNNNGG	1 cut(s)	573
BseMII	CTCAG	2 cut(s)	464, 1040
BseNI	ACTGG	5 cut(s)	43, 47, 256, 911, 1078
BseRI	GAGGAG	1 cut(s)	1107
BseYI	CCCAGC	1 cut(s)	5
BsgI	GTGCAG	1 cut(s)	898
BshFI	GGCC	2 cut(s)	520, 919
BshVI	ATCGAT	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	573
BsmAI	GTCTC	1 cut(s)	4
BsmFI	GGGAC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	816
BsnI	GGCC	2 cut(s)	520, 919
Bsp119I	TTCGAA	2 cut(s)	415, 1102
Bsp1286I	GDGCHC	2 cut(s)	292, 1099
Bsp143I	GATC	3 cut(s)	100, 432, 892
Bsp19I	CCATGG	2 cut(s)	515, 521
BspACI	CCGC	3 cut(s)	657, 665, 1022
BspANI	GGCC	2 cut(s)	520, 919
BspCNI	CTCAG	2 cut(s)	463, 1039
BspDI	ATCGAT	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	578, 1096
BspMAI	CTGCAG	1 cut(s)	139
BspPI	GGATC	1 cut(s)	900
BspT104I	TTCGAA	2 cut(s)	415, 1102
BsrI	ACTGG	5 cut(s)	43, 47, 256, 911, 1078
BssECI	CCNNGG	4 cut(s)	515, 521, 675, 827
BssMI	GATC	3 cut(s)	100, 432, 892
BssT1I	CCWWGG	4 cut(s)	515, 521, 675, 827
Bst4CI	ACNGT	2 cut(s)	19, 175
Bst6I	CTCTTC	2 cut(s)	692, 754
BstBI	TTCGAA	2 cut(s)	415, 1102
BstDEI	CTNAG	4 cut(s)	450, 555, 650, 1026
BstDSI	CCRYGG	2 cut(s)	515, 521
BstF5I	GGATG	4 cut(s)	260, 381, 730, 1128
BstKTI	GATC	3 cut(s)	103, 435, 895
BstMAI	GTCTC	1 cut(s)	4
BstMBI	GATC	3 cut(s)	100, 432, 892
BstMWI	GCNNNNNNNGC	4 cut(s)	242, 916, 1021, 1094
BstNSI	RCATGY	2 cut(s)	222, 980
BstSFI	CTRYAG	2 cut(s)	135, 633
BstV2I	GAAGAC	1 cut(s)	221
BstXI	CCANNNNNNTGG	1 cut(s)	522
Bsu15I	ATCGAT	1 cut(s)	103
Bsu36I	CCTNAGG	2 cut(s)	555, 1026
BsuI	GTATCC	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	520, 919
BsuTUI	ATCGAT	1 cut(s)	103
BtgI	CCRYGG	2 cut(s)	515, 521
BtsCI	GGATG	4 cut(s)	260, 381, 730, 1128
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	2 cut(s)	15, 132
Cfr13I	GGNCC	2 cut(s)	576, 679
ClaI	ATCGAT	1 cut(s)	103
Csp6I	GTAC	2 cut(s)	44, 369
CspCI	CAANNNNNGTGG	2 cut(s)	266, 301
CviAII	CATG	7 cut(s)	112, 219, 372, 516, 522, 587, 977
CviQI	GTAC	2 cut(s)	44, 369
DdeI	CTNAG	4 cut(s)	450, 555, 650, 1026
DpnI	GATC	3 cut(s)	102, 434, 894
DpnII	GATC	3 cut(s)	100, 432, 892
DraI	TTTAAA	2 cut(s)	795, 904
EaeI	YGGCCR	1 cut(s)	518
Eam1104I	CTCTTC	2 cut(s)	692, 754
EarI	CTCTTC	2 cut(s)	692, 754
EciI	GGCGGA	1 cut(s)	1011
Eco130I	CCWWGG	4 cut(s)	515, 521, 675, 827
Eco24I	GRGCYC	2 cut(s)	292, 1099
Eco47I	GGWCC	2 cut(s)	576, 679
Eco81I	CCTNAGG	2 cut(s)	555, 1026
EcoT14I	CCWWGG	4 cut(s)	515, 521, 675, 827
EcoT38I	GRGCYC	2 cut(s)	292, 1099
ErhI	CCWWGG	4 cut(s)	515, 521, 675, 827
FaeI	CATG	7 cut(s)	115, 222, 375, 519, 525, 590, 980
FalI	AAGNNNNNCTT	3 cut(s)	369, 401, 1158
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	7 cut(s)	111, 218, 371, 515, 521, 586, 976
FauI	CCCGC	1 cut(s)	672
FauNDI	CATATG	1 cut(s)	437
Fnu4HI	GCNGC	1 cut(s)	658
FokI	GGATG	4 cut(s)	267, 368, 717, 1135
FriOI	GRGCYC	2 cut(s)	292, 1099
Fsp4HI	GCNGC	1 cut(s)	658
FspBI	CTAG	2 cut(s)	360, 366
GluI	GCNGC	1 cut(s)	658
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	1 cut(s)	1110
HaeIII	GGCC	2 cut(s)	520, 919
Hin1II	CATG	7 cut(s)	115, 222, 375, 519, 525, 590, 980
HincII	GTYRAC	1 cut(s)	600
HindII	GTYRAC	1 cut(s)	600
HindIII	AAGCTT	2 cut(s)	294, 539
HinfI	GANTC	5 cut(s)	12, 229, 506, 671, 882
HpaI	GTTAAC	1 cut(s)	600
HphI	GGTGA	3 cut(s)	434, 571, 1127
Hpy166II	GTNNAC	3 cut(s)	182, 600, 942
Hpy188I	TCNGA	1 cut(s)	453
Hpy188III	TCNNGA	3 cut(s)	98, 990, 1028
Hpy8I	GTNNAC	3 cut(s)	182, 600, 942
HpyAV	CCTTC	4 cut(s)	366, 930, 996, 1109
HpyCH4III	ACNGT	2 cut(s)	19, 175
HpyCH4IV	ACGT	1 cut(s)	822
HpyCH4V	TGCA	9 cut(s)	61, 137, 327, 334, 586, 699, 814, 879, 1063
HpyF10VI	GCNNNNNNNGC	4 cut(s)	242, 916, 1021, 1094
HpyF3I	CTNAG	4 cut(s)	450, 555, 650, 1026
HpySE526I	ACGT	1 cut(s)	822
Hsp92II	CATG	7 cut(s)	115, 222, 375, 519, 525, 590, 980
KspAI	GTTAAC	1 cut(s)	600
Kzo9I	GATC	3 cut(s)	100, 432, 892
LmnI	GCTCC	1 cut(s)	1094
LweI	GCATC	1 cut(s)	390
MaeI	CTAG	2 cut(s)	360, 366
MaeII	ACGT	1 cut(s)	822
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	3 cut(s)	102, 434, 894
MboI	GATC	3 cut(s)	100, 432, 892
MboII	GAAGA	5 cut(s)	157, 223, 226, 679, 741
MhlI	GDGCHC	2 cut(s)	292, 1099
MlsI	TGGCCA	1 cut(s)	520
MluCI	AATT	7 cut(s)	21, 460, 499, 790, 905, 927, 1040
MluNI	TGGCCA	1 cut(s)	520
MlyI	GAGTC	1 cut(s)	6
Mox20I	TGGCCA	1 cut(s)	520
MscI	TGGCCA	1 cut(s)	520
MseI	TTAA	8 cut(s)	315, 471, 599, 771, 794, 903, 926, 1043
MslI	CAYNNNNRTG	1 cut(s)	520
Msp20I	TGGCCA	1 cut(s)	520
Mva1269I	GAATGC	1 cut(s)	816
MwoI	GCNNNNNNNGC	4 cut(s)	242, 916, 1021, 1094
NcoI	CCATGG	2 cut(s)	515, 521
NdeI	CATATG	1 cut(s)	437
NdeII	GATC	3 cut(s)	100, 432, 892
NlaIII	CATG	7 cut(s)	115, 222, 375, 519, 525, 590, 980
NlaIV	GGNNCC	2 cut(s)	578, 1096
NspI	RCATGY	2 cut(s)	222, 980
NspV	TTCGAA	2 cut(s)	415, 1102
PciI	ACATGT	1 cut(s)	218
PctI	GAATGC	1 cut(s)	816
PfeI	GAWTC	4 cut(s)	229, 506, 671, 882
PkrI	GCNGC	1 cut(s)	659
PleI	GAGTC	1 cut(s)	6
PpsI	GAGTC	1 cut(s)	6
PscI	ACATGT	1 cut(s)	218
PspFI	CCCAGC	1 cut(s)	5
PspN4I	GGNNCC	2 cut(s)	578, 1096
PspPI	GGNCC	2 cut(s)	576, 679
PstI	CTGCAG	1 cut(s)	139
RsaI	GTAC	2 cut(s)	45, 370
RsaNI	GTAC	2 cut(s)	44, 369
RseI	CAYNNNNRTG	1 cut(s)	520
SaqAI	TTAA	8 cut(s)	315, 471, 599, 771, 794, 903, 926, 1043
SatI	GCNGC	1 cut(s)	658
Sau3AI	GATC	3 cut(s)	100, 432, 892
Sau96I	GGNCC	2 cut(s)	576, 679
SchI	GAGTC	1 cut(s)	6
SduI	GDGCHC	2 cut(s)	292, 1099
SfaNI	GCATC	1 cut(s)	390
SfcI	CTRYAG	2 cut(s)	135, 633
SfuI	TTCGAA	2 cut(s)	415, 1102
SinI	GGWCC	2 cut(s)	576, 679
SmiMI	CAYNNNNRTG	1 cut(s)	520
SmlI	CTYRAG	1 cut(s)	291
SmoI	CTYRAG	1 cut(s)	291
Sse9I	AATT	7 cut(s)	21, 460, 499, 790, 905, 927, 1040
SsiI	CCGC	3 cut(s)	657, 665, 1022
SspI	AATATT	1 cut(s)	953
SspMI	CTAG	2 cut(s)	360, 366
StyI	CCWWGG	4 cut(s)	515, 521, 675, 827
TaaI	ACNGT	2 cut(s)	19, 175
TaiI	ACGT	1 cut(s)	825
TaqI	TCGA	3 cut(s)	103, 415, 1102
TasI	AATT	7 cut(s)	21, 460, 499, 790, 905, 927, 1040
TatI	WGTACW	1 cut(s)	368
TauI	GCSGC	1 cut(s)	660
TfiI	GAWTC	4 cut(s)	229, 506, 671, 882
Tru1I	TTAA	8 cut(s)	315, 471, 599, 771, 794, 903, 926, 1043
Tru9I	TTAA	8 cut(s)	315, 471, 599, 771, 794, 903, 926, 1043
TscAI	CASTG	2 cut(s)	22, 139
TspDTI	ATGAA	5 cut(s)	128, 242, 621, 923, 1139
TspRI	CASTG	2 cut(s)	22, 139
VpaK11BI	GGWCC	2 cut(s)	576, 679
XapI	RAATTY	1 cut(s)	499
XceI	RCATGY	2 cut(s)	222, 980
XspI	CTAG	2 cut(s)	360, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.