Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0016475

Physical Location & Seq

Genomic Coordinates Forward (+)

2905014 .. 2906177

Gene Structure 1164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G019600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGCGCTACACGCGCTGCATCCCAAAATCACATTTTTTCCAAAATCTACCGATTACTTGCTTCACGGTGGCGACACCACCAATTGACTTCACTTTCTCTGCTTCCCGACCTTCGGGAAGTGGAGGGTCTTTTGAATCTGCTGGTGTTAAGAGAAGCCGTATCCTTGAACCTGATGGTACTGATGCGGGAGCTATGGAGGTTGAGCCTTTTCCTACTGTAGTGCCGAAACCTATAATTAATTTTCGTGAAAAGCTCATGAACCCAGGTGGGATCGGAGTGCATAAGGAGGATCTGGTGGGTATGGAGGATGATAAACTCACAATAGAGGATGATGATTTTGAAGTCTTAGAGGGTACTCGTGGTCTTTGCATACGCTTTTGCACCAAGGTGAAGGAACGACTCTACCGTCCCTGGCGGAATGCAATTATAATCAAACTAATGGGCAGGACCCATACATACAACTTCCTATTAGCTCGTCTAAGACAAAAATGGAGTCTTTTGAAAGGTGCAATGAGTTTGATTGACCTGGAAAACAACTTCTATGTTGTACGCTTTGTGCTTGAGGAAGACATGAGGTACGTTTTTTCTGGGGGACCATGGGTAATTGCTGGGCAATCTTTAGTGATGCAGAGATGGAAACTAGGATTTGATCCTAATGAAGCTACTATTACTCGTATGGCTGTGCGGGTGAGTATTACAAGTTTACATGTTGAATGGTTTAATCCTGAGGCAATTAAACGTATTGGGGACCTTATTGGTGTGACTTATCGCATTGATACTCACACAGTTGCTCAAGCCCGTGGCAAATATGCTCGAATATGTATTGAACTGGATTTGACCAAACCGTTAATTGCTAATGTGCAAGTTGAGAATAATTGGTATGCCATAGAATATGAAGGACTCCATTTGGTCTGCTTTGGCTGTGGTATTTATGGCCATAATAGAAACCAATGTCCATATGAAATTAGAGTCCATGATGGTACCCAAAAGCCTATGGAAGGAGAGTCTACGTCTGATAAGGAACCTTTTGGGGTTGATACTGATATTGGGACTTCTTCTGGCACTAAGGATGCTTATGCAGCTACCTCTGCGGATTCAAGTCAATTCGGTCCTTGGAGCCTAGTTAAACCTTTTAGGAAAAAAAAAGGAGCTTACACATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283 Exo_endo_phos_2 RVT_1 zf-CCHC_4

Protein Analysis

388

Amino Acids

43.66

Weight (kDa)

8.0

Isoelectric Point (pI)

27.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07656
prunus_persica	Prupe.2G199900_v2.0.a1 Prupe.7G019600_v2.0.a1
pyrus_communis	pycom07g06830
rosa_chinensis	RchiOBHm_Chr2g0089011
rosa_multiflora	Rmu_co8469645.1_g000001 Rmu_sc0000927.1_g000013 Rmu_sc0001192.1_g000009 Rmu_sc0001947.1_g000005 Rmu_sc0004165.1_g000033 Rmu_sc0012042.1_g000003
rosa_rugosa	Rorug01G0073000 Rorug04G0155000 Rorug04G0186300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	428
AasI	GACNNNNNNGTC	1 cut(s)	405
Acc65I	GGTACC	1 cut(s)	980
AccB1I	GGYRCC	1 cut(s)	980
AccI	GTMKAC	1 cut(s)	1007
AccII	CGCG	1 cut(s)	13
AciI	CCGC	4 cut(s)	185, 415, 685, 1091
AclWI	GGATC	3 cut(s)	278, 297, 644
AcoI	YGGCCR	1 cut(s)	934
AfaI	GTAC	5 cut(s)	178, 355, 549, 578, 982
AfiI	CCNNNNNNNGG	2 cut(s)	112, 998
AflIII	ACRYGT	1 cut(s)	706
AgsI	TTSAA	7 cut(s)	134, 167, 341, 502, 713, 827, 1098
AjnI	CCWGG	3 cut(s)	262, 410, 525
AleI	CACNNNNGTG	1 cut(s)	386
AluBI	AGCT	6 cut(s)	191, 253, 473, 662, 1082, 1151
AluI	AGCT	6 cut(s)	191, 253, 473, 662, 1082, 1151
AlwI	GGATC	3 cut(s)	278, 297, 644
AoxI	GGCC	1 cut(s)	934
ApeKI	GCWGC	2 cut(s)	15, 1079
ArsI	GACNNNNNNTTYG	2 cut(s)	478, 510
AseI	ATTAAT	1 cut(s)	237
Asp718I	GGTACC	1 cut(s)	980
AspLEI	GCGC	2 cut(s)	6, 15
AspS9I	GGNCC	4 cut(s)	447, 593, 748, 1109
AsuHPI	GGTGA	2 cut(s)	400, 700
AvaII	GGWCC	4 cut(s)	447, 593, 748, 1109
AxyI	CCTNAGG	1 cut(s)	726
BalI	TGGCCA	1 cut(s)	936
BanI	GGYRCC	1 cut(s)	980
BauI	CACGAG	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	573
BbvI	GCAGC	2 cut(s)	2, 1091
BccI	CCATC	3 cut(s)	167, 627, 971
BceAI	ACGGC	1 cut(s)	141
BciT130I	CCWGG	3 cut(s)	264, 412, 527
BciVI	GTATCC	1 cut(s)	170
BfaI	CTAG	2 cut(s)	641, 1121
BfmI	CTRYAG	1 cut(s)	216
BfuI	GTATCC	1 cut(s)	170
BisI	GCNGC	2 cut(s)	16, 1080
BlsI	GCNGC	2 cut(s)	17, 1081
Bme1390I	CCNGG	3 cut(s)	264, 412, 527
Bme18I	GGWCC	4 cut(s)	447, 593, 748, 1109
BmgT120I	GGNCC	4 cut(s)	447, 593, 748, 1109
BmiI	GGNNCC	6 cut(s)	449, 594, 749, 982, 1023, 1118
BmrFI	CCNGG	3 cut(s)	264, 412, 527
BmsI	GCATC	4 cut(s)	27, 172, 615, 1060
BpiI	GAAGAC	1 cut(s)	573
BpuEI	CTTGAG	2 cut(s)	581, 777
BsaJI	CCNNGG	6 cut(s)	262, 384, 410, 596, 799, 1112
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 998
Bse1I	ACTGG	1 cut(s)	834
Bse21I	CCTNAGG	1 cut(s)	726
Bse3DI	GCAATG	1 cut(s)	516
BseBI	CCWGG	3 cut(s)	264, 412, 527
BseDI	CCNNGG	6 cut(s)	262, 384, 410, 596, 799, 1112
BseGI	GGATG	4 cut(s)	18, 313, 334, 1075
BseLI	CCNNNNNNNGG	2 cut(s)	112, 998
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	1 cut(s)	717
BseNI	ACTGG	1 cut(s)	834
BseXI	GCAGC	2 cut(s)	2, 1091
BseYI	CCCAGC	1 cut(s)	608
Bsh1236I	CGCG	1 cut(s)	13
BshFI	GGCC	1 cut(s)	936
BshNI	GGYRCC	1 cut(s)	980
BslFI	GGGAC	4 cut(s)	393, 606, 761, 1063
BslI	CCNNNNNNNGG	2 cut(s)	112, 998
BsmFI	GGGAC	4 cut(s)	393, 606, 761, 1063
BsmI	GAATGC	1 cut(s)	424
BsnI	GGCC	1 cut(s)	936
Bsp143I	GATC	3 cut(s)	270, 289, 649
Bsp19I	CCATGG	1 cut(s)	596
BspACI	CCGC	4 cut(s)	185, 415, 685, 1091
BspANI	GGCC	1 cut(s)	936
BspCNI	CTCAG	1 cut(s)	718
BspFNI	CGCG	1 cut(s)	13
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	6 cut(s)	449, 594, 749, 982, 1023, 1118
BspPI	GGATC	3 cut(s)	278, 297, 644
BspT107I	GGYRCC	1 cut(s)	980
BsrDI	GCAATG	1 cut(s)	516
BsrI	ACTGG	1 cut(s)	834
BssECI	CCNNGG	6 cut(s)	262, 384, 410, 596, 799, 1112
BssMI	GATC	3 cut(s)	270, 289, 649
BssSI	CACGAG	1 cut(s)	357
BssT1I	CCWWGG	3 cut(s)	384, 596, 1112
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	3 cut(s)	264, 412, 527
Bst4CI	ACNGT	5 cut(s)	67, 217, 407, 787, 846
BstDEI	CTNAG	4 cut(s)	346, 479, 726, 1065
BstDSI	CCRYGG	2 cut(s)	596, 799
BstENI	CCTNNNNNAGG	1 cut(s)	996
BstF5I	GGATG	4 cut(s)	18, 313, 334, 1075
BstFNI	CGCG	1 cut(s)	13
BstHHI	GCGC	2 cut(s)	6, 15
BstKTI	GATC	3 cut(s)	273, 292, 652
BstMBI	GATC	3 cut(s)	270, 289, 649
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 12, 1079, 1088
BstNI	CCWGG	3 cut(s)	264, 412, 527
BstNSI	RCATGY	2 cut(s)	710, 1161
BstSCI	CCNGG	3 cut(s)	262, 410, 525
BstSFI	CTRYAG	1 cut(s)	216
BstUI	CGCG	1 cut(s)	13
BstV1I	GCAGC	2 cut(s)	2, 1091
BstV2I	GAAGAC	1 cut(s)	573
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
Bsu36I	CCTNAGG	1 cut(s)	726
BsuI	GTATCC	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	936
BtgI	CCRYGG	2 cut(s)	596, 799
BtsCI	GGATG	4 cut(s)	18, 313, 334, 1075
CciI	TCATGA	1 cut(s)	255
CfoI	GCGC	2 cut(s)	6, 15
Cfr13I	GGNCC	4 cut(s)	447, 593, 748, 1109
Csp6I	GTAC	5 cut(s)	177, 354, 548, 577, 981
CviAII	CATG	6 cut(s)	256, 571, 597, 707, 974, 1158
CviQI	GTAC	5 cut(s)	177, 354, 548, 577, 981
DdeI	CTNAG	4 cut(s)	346, 479, 726, 1065
DpnI	GATC	3 cut(s)	272, 291, 651
DpnII	GATC	3 cut(s)	270, 289, 649
DrdI	GACNNNNNNGTC	1 cut(s)	405
DseDI	GACNNNNNNGTC	1 cut(s)	405
EaeI	YGGCCR	1 cut(s)	934
EciI	GGCGGA	1 cut(s)	430
Eco130I	CCWWGG	3 cut(s)	384, 596, 1112
Eco47I	GGWCC	4 cut(s)	447, 593, 748, 1109
Eco81I	CCTNAGG	1 cut(s)	726
EcoNI	CCTNNNNNAGG	1 cut(s)	996
EcoO109I	RGGNCCY	2 cut(s)	447, 748
EcoRII	CCWGG	3 cut(s)	262, 410, 525
EcoT14I	CCWWGG	3 cut(s)	384, 596, 1112
ErhI	CCWWGG	3 cut(s)	384, 596, 1112
FaeI	CATG	6 cut(s)	259, 574, 600, 710, 977, 1161
FaqI	GGGAC	4 cut(s)	393, 606, 761, 1063
FatI	CATG	6 cut(s)	255, 570, 596, 706, 973, 1157
FauI	CCCGC	2 cut(s)	178, 678
FauNDI	CATATG	1 cut(s)	958
FblI	GTMKAC	1 cut(s)	1007
Fnu4HI	GCNGC	2 cut(s)	16, 1080
FokI	GGATG	4 cut(s)	5, 320, 341, 1082
Fsp4HI	GCNGC	2 cut(s)	16, 1080
FspBI	CTAG	2 cut(s)	641, 1121
GlaI	GCGC	2 cut(s)	5, 14
GluI	GCNGC	2 cut(s)	16, 1080
GsaI	CCCAGC	1 cut(s)	612
HaeIII	GGCC	1 cut(s)	936
HhaI	GCGC	2 cut(s)	6, 15
Hin1II	CATG	6 cut(s)	259, 574, 600, 710, 977, 1161
Hin6I	GCGC	2 cut(s)	4, 13
HinP1I	GCGC	2 cut(s)	4, 13
HinfI	GANTC	7 cut(s)	134, 399, 493, 900, 969, 1004, 1094
HphI	GGTGA	2 cut(s)	400, 700
Hpy166II	GTNNAC	2 cut(s)	704, 1008
Hpy188I	TCNGA	2 cut(s)	275, 1015
Hpy188III	TCNNGA	5 cut(s)	105, 114, 245, 256, 725
Hpy8I	GTNNAC	2 cut(s)	704, 1008
HpyAV	CCTTC	4 cut(s)	120, 385, 890, 992
HpyCH4III	ACNGT	5 cut(s)	67, 217, 407, 787, 846
HpyCH4IV	ACGT	3 cut(s)	579, 739, 1010
HpyCH4V	TGCA	9 cut(s)	18, 280, 369, 381, 422, 509, 628, 862, 1079
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 12, 1079, 1088
HpyF3I	CTNAG	4 cut(s)	346, 479, 726, 1065
HpySE526I	ACGT	3 cut(s)	579, 739, 1010
Hsp92II	CATG	6 cut(s)	259, 574, 600, 710, 977, 1161
HspAI	GCGC	2 cut(s)	4, 13
KpnI	GGTACC	1 cut(s)	984
Kzo9I	GATC	3 cut(s)	270, 289, 649
LmnI	GCTCC	3 cut(s)	188, 1116, 1148
Lsp1109I	GCAGC	2 cut(s)	2, 1091
LweI	GCATC	4 cut(s)	27, 172, 615, 1060
MaeI	CTAG	2 cut(s)	641, 1121
MaeII	ACGT	3 cut(s)	579, 739, 1010
MaeIII	GTNAC	1 cut(s)	760
MalI	GATC	3 cut(s)	272, 291, 651
MboI	GATC	3 cut(s)	270, 289, 649
MboII	GAAGA	2 cut(s)	578, 1047
MfeI	CAATTG	1 cut(s)	81
MflI	RGATCY	1 cut(s)	289
MlsI	TGGCCA	1 cut(s)	936
MluNI	TGGCCA	1 cut(s)	936
MlyI	GAGTC	5 cut(s)	393, 502, 894, 978, 1013
Mox20I	TGGCCA	1 cut(s)	936
MscI	TGGCCA	1 cut(s)	936
MseI	TTAA	6 cut(s)	147, 237, 720, 735, 848, 1125
MslI	CAYNNNNRTG	1 cut(s)	386
Msp20I	TGGCCA	1 cut(s)	936
MspR9I	CCNGG	3 cut(s)	264, 412, 527
MunI	CAATTG	1 cut(s)	81
Mva1269I	GAATGC	1 cut(s)	424
MvaI	CCWGG	3 cut(s)	264, 412, 527
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	4 cut(s)	10, 12, 1079, 1088
NcoI	CCATGG	1 cut(s)	596
NdeI	CATATG	1 cut(s)	958
NdeII	GATC	3 cut(s)	270, 289, 649
NlaIII	CATG	6 cut(s)	259, 574, 600, 710, 977, 1161
NlaIV	GGNNCC	6 cut(s)	449, 594, 749, 982, 1023, 1118
NmuCI	GTSAC	1 cut(s)	760
NspI	RCATGY	2 cut(s)	710, 1161
OliI	CACNNNNGTG	1 cut(s)	386
PagI	TCATGA	1 cut(s)	255
PciI	ACATGT	1 cut(s)	706
PcsI	WCGNNNNNNNCGW	1 cut(s)	403
PctI	GAATGC	1 cut(s)	424
PfeI	GAWTC	2 cut(s)	134, 1094
PkrI	GCNGC	2 cut(s)	17, 1081
PleI	GAGTC	5 cut(s)	393, 501, 894, 977, 1012
PpsI	GAGTC	5 cut(s)	393, 501, 894, 977, 1012
PpuMI	RGGWCCY	2 cut(s)	447, 748
PscI	ACATGT	1 cut(s)	706
PshBI	ATTAAT	1 cut(s)	237
PsiI	TTATAA	1 cut(s)	428
Psp5II	RGGWCCY	2 cut(s)	447, 748
Psp6I	CCWGG	3 cut(s)	262, 410, 525
PspFI	CCCAGC	1 cut(s)	608
PspGI	CCWGG	3 cut(s)	262, 410, 525
PspN4I	GGNNCC	6 cut(s)	449, 594, 749, 982, 1023, 1118
PspPI	GGNCC	4 cut(s)	447, 593, 748, 1109
PspPPI	RGGWCCY	2 cut(s)	447, 748
PsuI	RGATCY	1 cut(s)	289
RsaI	GTAC	5 cut(s)	178, 355, 549, 578, 982
RsaNI	GTAC	5 cut(s)	177, 354, 548, 577, 981
RseI	CAYNNNNRTG	1 cut(s)	386
SaqAI	TTAA	6 cut(s)	147, 237, 720, 735, 848, 1125
SatI	GCNGC	2 cut(s)	16, 1080
Sau3AI	GATC	3 cut(s)	270, 289, 649
Sau96I	GGNCC	4 cut(s)	447, 593, 748, 1109
SchI	GAGTC	5 cut(s)	393, 502, 894, 978, 1013
ScrFI	CCNGG	3 cut(s)	264, 412, 527
SfaNI	GCATC	4 cut(s)	27, 172, 615, 1060
SfcI	CTRYAG	1 cut(s)	216
SinI	GGWCC	4 cut(s)	447, 593, 748, 1109
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	2 cut(s)	560, 792
SmoI	CTYRAG	2 cut(s)	560, 792
SsiI	CCGC	4 cut(s)	185, 415, 685, 1091
SspMI	CTAG	2 cut(s)	641, 1121
StyD4I	CCNGG	3 cut(s)	262, 410, 525
StyI	CCWWGG	3 cut(s)	384, 596, 1112
TaaI	ACNGT	5 cut(s)	67, 217, 407, 787, 846
TaiI	ACGT	3 cut(s)	582, 742, 1013
TaqI	TCGA	1 cut(s)	814
TaqII	GACCGA	1 cut(s)	1097
TfiI	GAWTC	2 cut(s)	134, 1094
Tru1I	TTAA	6 cut(s)	147, 237, 720, 735, 848, 1125
Tru9I	TTAA	6 cut(s)	147, 237, 720, 735, 848, 1125
TseFI	GTSAC	1 cut(s)	760
TseI	GCWGC	2 cut(s)	15, 1079
Tsp45I	GTSAC	1 cut(s)	760
TspDTI	ATGAA	4 cut(s)	272, 672, 909, 975
VpaK11BI	GGWCC	4 cut(s)	447, 593, 748, 1109
VspI	ATTAAT	1 cut(s)	237
XagI	CCTNNNNNAGG	1 cut(s)	996
XceI	RCATGY	2 cut(s)	710, 1161
XmiI	GTMKAC	1 cut(s)	1007
XspI	CTAG	2 cut(s)	641, 1121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.