Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0016475

Physical Location & Seq

Genomic Coordinates Forward (+)

11910661 .. 11911836

Gene Structure 1176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0073000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGAAAGGATTGGGAGCATGATAGGCAAGGTAGTTAAGGTTGATCAACACACTTTAGCTCAAGCCAGGGGTAAATTTTGCAGGGTTTGTGTTGAAATCAATCTAGCTGAGCCTTTGAAACCTTTTGTTGAAATGGATTCCAGACCTTTCAGTGTTGTTTATGAAGGTATCTCAACCATCTGTTTCAATTGTGGAGTTTATGGTCATGTTAAGGAGCATTGTCCTTATGTGGGAGAGGTAGCAAATGCTGAGGAAGTTTCGGAAGCAGTGAACAATAAGGGAAGCAGTCCCCTTTGTGGTGATAATTCTGTAACGAAGACCGACACTAGTATACCGATTCCTGAGAACGTTCCACAGGCTAGTCCTCATATTTCTCCATCTACTACAAAGTGCGCAGTCAAGAGTAACATGGGACCATGGATGATCATGAACTATCGGAAGAAAAAGTCGATGAGTAATGCTCAAAGTGAAGATGTTAAGGAGAAGAACTCATCTGGGTCTAGATTTGCTCCTTTGCAGGCAGAGAATGGTATTGAGGGAGAAAAATTGGAATGTAATGCTCACGATGTTGCTCCCAAAACCCACACTGATAAGCTTAGTGCTTCTGAACCGAAAATTGTGAAGCTATGGAAGCAGGTGCAAGAGAAAACTGAGAAATCCTTACCTAAGGAAGGGAAAATGAAGGAGAAGGCTGTTGTCAAAAACCCGGAGCATTCTGATGCAATGCCTAATCCTATGAGAGGGAGAACTCCTTTACAGGAGATTTCCAATGCCAAGCCTGCTCCTAGCAAAACTAGACTTGGTTCAAAAACTAGAAGTGCATTTGGAAAGGGTACAAAGGATAATTTTCCCAGTAGTTCCAAGATTTTAGCCTCTTCATCTGTCATGCAGGGGGTGTTTAAGACTGGGTTCACTGAATTTAGTAATATGTTGAAAGCTGGTCAATATAGAAACCAAAGTCTTTCCTCTACTGATGCTGAGTTTGGACACACACCACCTGAGGAAGATTTAAACCAAGAAGATGTTGATGGTGACTGTGTGTTGGTTAATATCGGTGACGAGGATCACCAGAGTCCTAATGACTCATCTACTTCTTTGCAGGCTTCTGCTATTGACGATGCTGGTATGCAGTCCAATCTATCCTCTCAGAAGGGAGAGGATATGATTGTTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283 zf-CCHC_4

Protein Analysis

391

Amino Acids

42.47

Weight (kDa)

6.19

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07656
prunus_persica	Prupe.2G199900_v2.0.a1 Prupe.7G019600_v2.0.a1
pyrus_communis	pycom07g06830
rosa_chinensis	RchiOBHm_Chr2g0089011
rosa_multiflora	Rmu_co8469645.1_g000001 Rmu_sc0000927.1_g000013 Rmu_sc0001192.1_g000009 Rmu_sc0001947.1_g000005 Rmu_sc0004165.1_g000033 Rmu_sc0012042.1_g000003
rosa_rugosa	Rorug01G0073000 Rorug04G0155000 Rorug04G0186300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	625
Acc16I	TGCGCA	1 cut(s)	394
Acc36I	ACCTGC	1 cut(s)	625
AccI	GTMKAC	1 cut(s)	331
AclI	AACGTT	1 cut(s)	348
AclWI	GGATC	1 cut(s)	1071
AcsI	RAATTY	2 cut(s)	74, 917
AfaI	GTAC	1 cut(s)	835
AfiI	CCNNNNNNNGG	4 cut(s)	230, 296, 671, 740
AgsI	TTSAA	6 cut(s)	95, 118, 131, 187, 807, 934
AhlI	ACTAGT	1 cut(s)	326
AjnI	CCWGG	1 cut(s)	65
AluBI	AGCT	5 cut(s)	59, 107, 595, 625, 938
AluI	AGCT	5 cut(s)	59, 107, 595, 625, 938
AlwI	GGATC	1 cut(s)	1071
ApoI	RAATTY	2 cut(s)	74, 917
AspLEI	GCGC	1 cut(s)	395
AspS9I	GGNCC	1 cut(s)	413
AsuC2I	CCSGG	1 cut(s)	707
AsuHPI	GGTGA	4 cut(s)	311, 1043, 1058, 1067
AvaII	GGWCC	1 cut(s)	413
AxyI	CCTNAGG	2 cut(s)	666, 999
BbsI	GAAGAC	1 cut(s)	323
BbvCI	CCTCAGC	1 cut(s)	249
BccI	CCATC	3 cut(s)	185, 385, 1022
BciT130I	CCWGG	1 cut(s)	67
BclI	TGATCA	2 cut(s)	43, 423
BcnI	CCSGG	1 cut(s)	707
BcuI	ACTAGT	1 cut(s)	326
BfaI	CTAG	7 cut(s)	104, 327, 360, 501, 786, 795, 813
BfuAI	ACCTGC	1 cut(s)	625
BlpI	GCTNAGC	1 cut(s)	108
Bme1390I	CCNGG	2 cut(s)	67, 707
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	1 cut(s)	414
BmrFI	CCNGG	2 cut(s)	67, 707
BmrI	ACTGGG	2 cut(s)	846, 915
BmsI	GCATC	3 cut(s)	709, 964, 1108
BmuI	ACTGGG	2 cut(s)	846, 915
BpiI	GAAGAC	1 cut(s)	323
BplI	GAGNNNNNCTC	4 cut(s)	445, 477, 473, 505
Bpu10I	CCTNAGC	1 cut(s)	249
Bpu1102I	GCTNAGC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	45
BpuMI	CCSGG	1 cut(s)	707
BsaJI	CCNNGG	2 cut(s)	66, 416
Bsc4I	CCNNNNNNNGG	4 cut(s)	230, 296, 671, 740
Bse1I	ACTGG	2 cut(s)	852, 910
Bse21I	CCTNAGG	2 cut(s)	666, 999
Bse3DI	GCAATG	1 cut(s)	729
BseBI	CCWGG	1 cut(s)	67
BseDI	CCNNGG	2 cut(s)	66, 416
BseGI	GGATG	1 cut(s)	426
BseLI	CCNNNNNNNGG	4 cut(s)	230, 296, 671, 740
BseMI	GCAATG	1 cut(s)	729
BseMII	CTCAG	7 cut(s)	99, 240, 333, 642, 969, 990, 1160
BseNI	ACTGG	2 cut(s)	852, 910
BsiSI	CCGG	1 cut(s)	707
BslFI	GGGAC	2 cut(s)	273, 426
BslI	CCNNNNNNNGG	4 cut(s)	230, 296, 671, 740
BsmFI	GGGAC	2 cut(s)	273, 426
BsmI	GAATGC	1 cut(s)	712
Bsp143I	GATC	3 cut(s)	43, 423, 1063
Bsp1720I	GCTNAGC	1 cut(s)	108
Bsp19I	CCATGG	1 cut(s)	416
BspCNI	CTCAG	7 cut(s)	100, 241, 334, 643, 970, 991, 1159
BspHI	TCATGA	1 cut(s)	426
BspLI	GGNNCC	1 cut(s)	414
BspMI	ACCTGC	1 cut(s)	625
BspPI	GGATC	1 cut(s)	1071
BsrDI	GCAATG	1 cut(s)	729
BsrI	ACTGG	2 cut(s)	852, 910
BssECI	CCNNGG	2 cut(s)	66, 416
BssMI	GATC	3 cut(s)	43, 423, 1063
BssNAI	GTATAC	1 cut(s)	332
BssT1I	CCWWGG	1 cut(s)	416
Bst1107I	GTATAC	1 cut(s)	332
Bst2UI	CCWGG	1 cut(s)	67
Bst4CI	ACNGT	1 cut(s)	1037
Bst6I	CTCTTC	1 cut(s)	880
BstC8I	GCNNGC	3 cut(s)	519, 780, 1101
BstDEI	CTNAG	9 cut(s)	108, 249, 342, 596, 651, 666, 978, 999, 1146
BstDSI	CCRYGG	1 cut(s)	416
BstENI	CCTNNNNNAGG	2 cut(s)	669, 738
BstF5I	GGATG	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	395
BstKTI	GATC	3 cut(s)	46, 426, 1066
BstMBI	GATC	3 cut(s)	43, 423, 1063
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 631, 779
BstNI	CCWGG	1 cut(s)	67
BstSCI	CCNGG	2 cut(s)	65, 705
BstV2I	GAAGAC	1 cut(s)	323
BstZ17I	GTATAC	1 cut(s)	332
Bsu36I	CCTNAGG	2 cut(s)	666, 999
BtgI	CCRYGG	1 cut(s)	416
BtsCI	GGATG	1 cut(s)	426
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	4 cut(s)	157, 273, 585, 912
BveI	ACCTGC	1 cut(s)	625
Cac8I	GCNNGC	3 cut(s)	519, 780, 1101
CciI	TCATGA	1 cut(s)	426
CfoI	GCGC	1 cut(s)	395
Cfr13I	GGNCC	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	834
CviAII	CATG	6 cut(s)	19, 206, 409, 417, 427, 886
CviQI	GTAC	1 cut(s)	834
DdeI	CTNAG	9 cut(s)	108, 249, 342, 596, 651, 666, 978, 999, 1146
DpnI	GATC	3 cut(s)	45, 425, 1065
DpnII	GATC	3 cut(s)	43, 423, 1063
DraI	TTTAAA	1 cut(s)	1011
Eam1104I	CTCTTC	1 cut(s)	880
EarI	CTCTTC	1 cut(s)	880
Eco130I	CCWWGG	1 cut(s)	416
Eco47I	GGWCC	1 cut(s)	413
Eco81I	CCTNAGG	2 cut(s)	666, 999
EcoNI	CCTNNNNNAGG	2 cut(s)	669, 738
EcoRII	CCWGG	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	416
ErhI	CCWWGG	1 cut(s)	416
FaeI	CATG	6 cut(s)	22, 209, 412, 420, 430, 889
FaqI	GGGAC	2 cut(s)	273, 426
FatI	CATG	6 cut(s)	18, 205, 408, 416, 426, 885
FbaI	TGATCA	2 cut(s)	43, 423
FblI	GTMKAC	1 cut(s)	331
FokI	GGATG	1 cut(s)	433
FspBI	CTAG	7 cut(s)	104, 327, 360, 501, 786, 795, 813
FspI	TGCGCA	1 cut(s)	394
GlaI	GCGC	1 cut(s)	394
HapII	CCGG	1 cut(s)	707
HhaI	GCGC	1 cut(s)	395
Hin1II	CATG	6 cut(s)	22, 209, 412, 420, 430, 889
Hin6I	GCGC	1 cut(s)	393
HinP1I	GCGC	1 cut(s)	393
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	4 cut(s)	137, 337, 1072, 1082
HpaII	CCGG	1 cut(s)	707
HphI	GGTGA	4 cut(s)	311, 1043, 1058, 1067
Hpy166II	GTNNAC	3 cut(s)	271, 332, 912
Hpy188I	TCNGA	5 cut(s)	262, 438, 607, 718, 1149
Hpy188III	TCNNGA	7 cut(s)	141, 341, 400, 427, 501, 563, 1173
Hpy8I	GTNNAC	3 cut(s)	271, 332, 912
HpyAV	CCTTC	5 cut(s)	158, 665, 676, 682, 1144
HpyCH4III	ACNGT	1 cut(s)	1037
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	8 cut(s)	81, 517, 640, 722, 821, 889, 1099, 1129
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 631, 779
HpyF3I	CTNAG	9 cut(s)	108, 249, 342, 596, 651, 666, 978, 999, 1146
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	6 cut(s)	22, 209, 412, 420, 430, 889
HspAI	GCGC	1 cut(s)	393
Ksp22I	TGATCA	2 cut(s)	43, 423
Kzo9I	GATC	3 cut(s)	43, 423, 1063
LmnI	GCTCC	6 cut(s)	15, 214, 514, 577, 709, 787
LweI	GCATC	3 cut(s)	709, 964, 1108
MaeI	CTAG	7 cut(s)	104, 327, 360, 501, 786, 795, 813
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	4 cut(s)	310, 404, 1031, 1055
MalI	GATC	3 cut(s)	45, 425, 1065
MboI	GATC	3 cut(s)	43, 423, 1063
MboII	GAAGA	7 cut(s)	328, 451, 482, 496, 867, 1016, 1031
MfeI	CAATTG	1 cut(s)	187
MluCI	AATT	7 cut(s)	74, 187, 304, 545, 615, 844, 917
MlyI	GAGTC	2 cut(s)	1076, 1081
MseI	TTAA	6 cut(s)	36, 210, 477, 900, 1010, 1047
MslI	CAYNNNNRTG	1 cut(s)	717
MspI	CCGG	1 cut(s)	707
MspR9I	CCNGG	2 cut(s)	67, 707
MunI	CAATTG	1 cut(s)	187
Mva1269I	GAATGC	1 cut(s)	712
MvaI	CCWGG	1 cut(s)	67
MwoI	GCNNNNNNNGC	3 cut(s)	24, 631, 779
NciI	CCSGG	1 cut(s)	707
NcoI	CCATGG	1 cut(s)	416
NdeII	GATC	3 cut(s)	43, 423, 1063
NlaIII	CATG	6 cut(s)	22, 209, 412, 420, 430, 889
NlaIV	GGNNCC	1 cut(s)	414
NmuCI	GTSAC	2 cut(s)	1031, 1055
NsbI	TGCGCA	1 cut(s)	394
PagI	TCATGA	1 cut(s)	426
PaqCI	CACCTGC	1 cut(s)	625
PctI	GAATGC	1 cut(s)	712
PfeI	GAWTC	2 cut(s)	137, 337
PleI	GAGTC	2 cut(s)	1076, 1080
PpsI	GAGTC	2 cut(s)	1076, 1080
Psp1406I	AACGTT	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	65
PspN4I	GGNNCC	1 cut(s)	414
PspPI	GGNCC	1 cut(s)	413
RsaI	GTAC	1 cut(s)	835
RsaNI	GTAC	1 cut(s)	834
RseI	CAYNNNNRTG	1 cut(s)	717
SaqAI	TTAA	6 cut(s)	36, 210, 477, 900, 1010, 1047
Sau3AI	GATC	3 cut(s)	43, 423, 1063
Sau96I	GGNCC	1 cut(s)	413
SchI	GAGTC	2 cut(s)	1076, 1081
ScrFI	CCNGG	2 cut(s)	67, 707
SfaNI	GCATC	3 cut(s)	709, 964, 1108
SinI	GGWCC	1 cut(s)	413
SmiMI	CAYNNNNRTG	1 cut(s)	717
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
SpeI	ACTAGT	1 cut(s)	326
Sse9I	AATT	7 cut(s)	74, 187, 304, 545, 615, 844, 917
SspMI	CTAG	7 cut(s)	104, 327, 360, 501, 786, 795, 813
StyD4I	CCNGG	2 cut(s)	65, 705
StyI	CCWWGG	1 cut(s)	416
TaaI	ACNGT	1 cut(s)	1037
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	1 cut(s)	449
TaqII	GACCGA	1 cut(s)	335
TasI	AATT	7 cut(s)	74, 187, 304, 545, 615, 844, 917
TfiI	GAWTC	2 cut(s)	137, 337
Tru1I	TTAA	6 cut(s)	36, 210, 477, 900, 1010, 1047
Tru9I	TTAA	6 cut(s)	36, 210, 477, 900, 1010, 1047
TscAI	CASTG	4 cut(s)	157, 273, 592, 919
TseFI	GTSAC	2 cut(s)	1031, 1055
Tsp45I	GTSAC	2 cut(s)	1031, 1055
TspDTI	ATGAA	4 cut(s)	177, 443, 695, 867
TspRI	CASTG	4 cut(s)	157, 273, 592, 919
VpaK11BI	GGWCC	1 cut(s)	413
XagI	CCTNNNNNAGG	2 cut(s)	669, 738
XapI	RAATTY	2 cut(s)	74, 917
XbaI	TCTAGA	1 cut(s)	500
XmiI	GTMKAC	1 cut(s)	331
XspI	CTAG	7 cut(s)	104, 327, 360, 501, 786, 795, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.