pycom07g06830

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0016475
Physical Location & Seq
Forward (+)
6138473 .. 6139351
879 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g06830.1

Sequence Viewer

Length: 879 bp
ATGACACAGTTGAGGCCTATTAGTCTGTGTTCGACGCTTTACAAGGTCATCTCCAAAATTTTGGTGGGTAAATTGAGACCGCTTCTCCATAAACTTGTTAGCCCTACTCAAGTGAGCTTCGTCCCGGGTAGGCAAATTATTGATAATGTCATTGTTGCTCAGGAAATCCTCCATAAGTACAGAAACACCAAAGGTAAAAAAGGGTTCATTGCTTGGAAAATTGACCTCTCCAAAGCTTATGATCGTCTTCAGTGGAGTTTTATTAGAGATGTTCTTTGGGAGATTGGGCTAAGAGGGAAAATTTTGGAACTCATCATGCAATGCGTTACCACAGTCAATTACCAAGCCATTGTTAATGGTGAGCTCACTGATTCTTTCTCCCCACAATGTGGAATCAGACAGGGAGATCCCCTTTCTTCCTATTTATTTGTGCTTTGCATGGAAAAACTATCTCATGTCATTAATGGATGCATCACTACTAAGAAATGGAAGCCAGTTAAGCTATCTAGCAATGGGCCTCCTGTCTCTCATCTCTTTTTTGCGGATGATCTTATTTTGTTTGCGGAAGCCTCCTCAACTCAAGCCAGATTATTGAAGGATTGCCTTGATATTTTTTGTGCCGTGTCTGGTCAGCAGGTGAATTTTGATAAATCATGTATCTACTGCTCTCCTAATATCTCTCGAAGTAAGGTTATTGAAATTGCCAACATCTGTGGTTCTCCTCTCACTTCTGATTTAGGTCACTACTTGGGTGTTCCGTTACTGCATTCTAAAGTCACTAAAGAGACGTATGGAAGCATAGTGGAAAAAGTTCAACGTCGACTGTCTGCTTGGAAGAGCAATACTCTCTCTATGGCAGGTAGGCTTGTCTACCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

293

Amino Acids

32.71

Weight (kDa)

9.42

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 2 - 253 4.9e-30 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 625
Acc36I ACCTGC 2 cut(s) 625, 848
AccB7I CCANNNNNTGG 1 cut(s) 389
AccI GTMKAC 2 cut(s) 820, 870
AciI CCGC 3 cut(s) 80, 542, 563
AclWI GGATC 1 cut(s) 401
AcsI RAATTY 3 cut(s) 57, 300, 640
AcuI CTGAAG 1 cut(s) 233
AdeI CACNNNGTG 1 cut(s) 389
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 389
AgsI TTSAA 3 cut(s) 595, 698, 815
AluBI AGCT 4 cut(s) 117, 236, 364, 502
AluI AGCT 4 cut(s) 117, 236, 364, 502
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 3 cut(s) 70, 529, 779
AlwI GGATC 1 cut(s) 401
Ama87I CYCGRG 1 cut(s) 124
AoxI GGCC 2 cut(s) 14, 515
ApoI RAATTY 3 cut(s) 57, 300, 640
AseI ATTAAT 1 cut(s) 462
Asp700I GAANNNNTTC 1 cut(s) 810
AspS9I GGNCC 1 cut(s) 515
AsuC2I CCSGG 2 cut(s) 125, 126
AsuHPI GGTGA 2 cut(s) 371, 649
AvaI CYCGRG 1 cut(s) 124
BanII GRGCYC 1 cut(s) 366
BbsI GAAGAC 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 366
BceAI ACGGC 1 cut(s) 605
BcnI CCSGG 2 cut(s) 125, 126
BcoDI GTCTC 3 cut(s) 70, 529, 779
BfaI CTAG 1 cut(s) 507
BfuAI ACCTGC 2 cut(s) 625, 848
Bme1390I CCNGG 2 cut(s) 125, 126
BmeT110I CYCGRG 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 515
BmrFI CCNGG 2 cut(s) 125, 126
BmsI GCATC 2 cut(s) 458, 480
BpiI GAAGAC 1 cut(s) 239
BplI GAGNNNNNCTC 2 cut(s) 829, 861
Bpu10I CCTNAGC 1 cut(s) 159
BpuEI CTTGAG 2 cut(s) 93, 564
BpuMI CCSGG 2 cut(s) 125, 126
BsaI GGTCTC 1 cut(s) 70
BsaJI CCNNGG 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse1I ACTGG 1 cut(s) 494
Bse3DI GCAATG 3 cut(s) 207, 326, 517
BseDI CCNNGG 1 cut(s) 124
BseGI GGATG 2 cut(s) 473, 550
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMI GCAATG 3 cut(s) 207, 326, 517
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 494
BseRI GAGGAG 2 cut(s) 562, 711
BshFI GGCC 2 cut(s) 16, 517
BsiHKAI GWGCWC 1 cut(s) 366
BsiHKCI CYCGRG 1 cut(s) 124
BsiSI CCGG 1 cut(s) 125
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 389
BsmAI GTCTC 3 cut(s) 70, 529, 779
BsmBI CGTCTC 1 cut(s) 779
BsmFI GGGAC 1 cut(s) 107
BsmI GAATGC 1 cut(s) 766
BsnI GGCC 2 cut(s) 16, 517
Bso31I GGTCTC 1 cut(s) 70
BsoBI CYCGRG 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 3 cut(s) 241, 406, 547
BspACI CCGC 3 cut(s) 80, 542, 563
BspANI GGCC 2 cut(s) 16, 517
BspCNI CTCAG 1 cut(s) 172
BspMI ACCTGC 2 cut(s) 625, 848
BspPI GGATC 1 cut(s) 401
BspQI GCTCTTC 1 cut(s) 830
BspTNI GGTCTC 1 cut(s) 70
BsrDI GCAATG 3 cut(s) 207, 326, 517
BsrI ACTGG 1 cut(s) 494
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 3 cut(s) 241, 406, 547
Bst4CI ACNGT 3 cut(s) 9, 334, 825
Bst6I CTCTTC 1 cut(s) 830
BstDEI CTNAG 3 cut(s) 159, 290, 480
BstF5I GGATG 2 cut(s) 473, 550
BstKTI GATC 3 cut(s) 244, 409, 550
BstMAI GTCTC 3 cut(s) 70, 529, 779
BstMBI GATC 3 cut(s) 241, 406, 547
BstMWI GCNNNNNNNGC 1 cut(s) 499
BstSCI CCNGG 2 cut(s) 123, 124
BstV2I GAAGAC 1 cut(s) 239
BstX2I RGATCY 1 cut(s) 406
BstXI CCANNNNNNTGG 1 cut(s) 61
BstYI RGATCY 1 cut(s) 406
BsuRI GGCC 2 cut(s) 16, 517
BtsCI GGATG 2 cut(s) 473, 550
BtsIMutI CAGTG 2 cut(s) 257, 366
BveI ACCTGC 2 cut(s) 625, 848
Cfr13I GGNCC 1 cut(s) 515
Cfr9I CCCGGG 1 cut(s) 124
CseI GACGC 1 cut(s) 43
Csp6I GTAC 1 cut(s) 178
CspCI CAANNNNNGTGG 2 cut(s) 694, 729
CviAII CATG 4 cut(s) 316, 439, 455, 654
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 3 cut(s) 159, 290, 480
DpnI GATC 3 cut(s) 243, 408, 549
DpnII GATC 3 cut(s) 241, 406, 547
DraIII CACNNNGTG 1 cut(s) 389
Eam1104I CTCTTC 1 cut(s) 830
EarI CTCTTC 1 cut(s) 830
Ecl136II GAGCTC 1 cut(s) 364
Eco147I AGGCCT 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 366
Eco31I GGTCTC 1 cut(s) 70
Eco53kI GAGCTC 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 233
Eco88I CYCGRG 1 cut(s) 124
EcoICRI GAGCTC 1 cut(s) 364
EcoT22I ATGCAT 1 cut(s) 473
EcoT38I GRGCYC 1 cut(s) 366
Esp3I CGTCTC 1 cut(s) 779
FaeI CATG 4 cut(s) 319, 442, 458, 657
FaqI GGGAC 1 cut(s) 107
FatI CATG 4 cut(s) 315, 438, 454, 653
FblI GTMKAC 2 cut(s) 820, 870
FokI GGATG 2 cut(s) 480, 557
FriOI GRGCYC 1 cut(s) 366
FspBI CTAG 1 cut(s) 507
HaeIII GGCC 2 cut(s) 16, 517
HapII CCGG 1 cut(s) 125
HgaI GACGC 1 cut(s) 43
Hin1II CATG 4 cut(s) 319, 442, 458, 657
HincII GTYRAC 1 cut(s) 821
HindII GTYRAC 1 cut(s) 821
HindIII AAGCTT 1 cut(s) 234
HinfI GANTC 2 cut(s) 371, 393
HpaII CCGG 1 cut(s) 125
HphI GGTGA 2 cut(s) 371, 649
Hpy166II GTNNAC 2 cut(s) 821, 871
Hpy188I TCNGA 2 cut(s) 398, 733
Hpy188III TCNNGA 2 cut(s) 161, 681
Hpy8I GTNNAC 2 cut(s) 821, 871
Hpy99I CGWCG 2 cut(s) 37, 822
HpyAV CCTTC 1 cut(s) 589
HpyCH4III ACNGT 3 cut(s) 9, 334, 825
HpyCH4IV ACGT 2 cut(s) 788, 817
HpyCH4V TGCA 4 cut(s) 319, 438, 471, 766
HpyF10VI GCNNNNNNNGC 1 cut(s) 499
HpyF3I CTNAG 3 cut(s) 159, 290, 480
HpySE526I ACGT 2 cut(s) 788, 817
Hsp92II CATG 4 cut(s) 319, 442, 458, 657
Kzo9I GATC 3 cut(s) 241, 406, 547
LguI GCTCTTC 1 cut(s) 830
LpnPI CCDG 9 cut(s) 138, 146, 386, 507, 534, 598, 612, 620, 843
LweI GCATC 2 cut(s) 458, 480
MaeI CTAG 1 cut(s) 507
MaeII ACGT 2 cut(s) 788, 817
MaeIII GTNAC 4 cut(s) 325, 740, 759, 775
MalI GATC 3 cut(s) 243, 408, 549
MboI GATC 3 cut(s) 241, 406, 547
MboII GAAGA 3 cut(s) 239, 408, 847
MflI RGATCY 1 cut(s) 406
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 8 cut(s) 57, 71, 135, 219, 300, 337, 640, 699
MnlI CCTC 8 cut(s) 6, 179, 236, 287, 528, 580, 583, 732
Mph1103I ATGCAT 1 cut(s) 473
MroXI GAANNNNTTC 1 cut(s) 810
MseI TTAA 3 cut(s) 354, 462, 498
MspI CCGG 1 cut(s) 125
MspR9I CCNGG 2 cut(s) 125, 126
Mva1269I GAATGC 1 cut(s) 766
MwoI GCNNNNNNNGC 1 cut(s) 499
NciI CCSGG 2 cut(s) 125, 126
NdeII GATC 3 cut(s) 241, 406, 547
NlaIII CATG 4 cut(s) 319, 442, 458, 657
NmuCI GTSAC 2 cut(s) 740, 775
NsiI ATGCAT 1 cut(s) 473
PaqCI CACCTGC 1 cut(s) 625
PceI AGGCCT 1 cut(s) 16
PciSI GCTCTTC 1 cut(s) 830
PctI GAATGC 1 cut(s) 766
PdmI GAANNNNTTC 1 cut(s) 810
PfeI GAWTC 2 cut(s) 371, 393
PflMI CCANNNNNTGG 1 cut(s) 389
PshBI ATTAAT 1 cut(s) 462
Psp124BI GAGCTC 1 cut(s) 366
PspPI GGNCC 1 cut(s) 515
PsuI RGATCY 1 cut(s) 406
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
SacI GAGCTC 1 cut(s) 366
SalI GTCGAC 1 cut(s) 819
SapI GCTCTTC 1 cut(s) 830
SaqAI TTAA 3 cut(s) 354, 462, 498
Sau3AI GATC 3 cut(s) 241, 406, 547
Sau96I GGNCC 1 cut(s) 515
ScrFI CCNGG 2 cut(s) 125, 126
SduI GDGCHC 1 cut(s) 366
SfaNI GCATC 2 cut(s) 458, 480
SmaI CCCGGG 1 cut(s) 126
SmlI CTYRAG 2 cut(s) 108, 579
SmoI CTYRAG 2 cut(s) 108, 579
Sse9I AATT 8 cut(s) 57, 71, 135, 219, 300, 337, 640, 699
SseBI AGGCCT 1 cut(s) 16
SsiI CCGC 3 cut(s) 80, 542, 563
SspMI CTAG 1 cut(s) 507
SstI GAGCTC 1 cut(s) 366
StuI AGGCCT 1 cut(s) 16
StyD4I CCNGG 2 cut(s) 123, 124
TaaI ACNGT 3 cut(s) 9, 334, 825
TaiI ACGT 2 cut(s) 791, 820
TaqI TCGA 3 cut(s) 32, 682, 820
TasI AATT 8 cut(s) 57, 71, 135, 219, 300, 337, 640, 699
TatI WGTACW 1 cut(s) 177
TfiI GAWTC 2 cut(s) 371, 393
Tru1I TTAA 3 cut(s) 354, 462, 498
Tru9I TTAA 3 cut(s) 354, 462, 498
TscAI CASTG 2 cut(s) 257, 373
TseFI GTSAC 2 cut(s) 740, 775
Tsp45I GTSAC 2 cut(s) 740, 775
TspDTI ATGAA 1 cut(s) 196
TspGWI ACGGA 1 cut(s) 747
TspMI CCCGGG 1 cut(s) 124
TspRI CASTG 2 cut(s) 257, 373
Van91I CCANNNNNTGG 1 cut(s) 389
VspI ATTAAT 1 cut(s) 462
XapI RAATTY 3 cut(s) 57, 300, 640
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XmaI CCCGGG 1 cut(s) 124
XmiI GTMKAC 2 cut(s) 820, 870
XmnI GAANNNNTTC 1 cut(s) 810
XspI CTAG 1 cut(s) 507
Zsp2I ATGCAT 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.