RchiOBHm_Chr2g0089011

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0016475
Physical Location & Seq
Reverse (-)
3325121 .. 3337700
12580 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46431

Sequence Viewer

Length: 291 bp
ATGGAACCCTCAAGGCCCTTGGCAGCTGATCGAATAGTTAAATTTACTCTAGAATCTGATCTTAATGTTGCCCTATGTGGAGGTCCTTGGATTCTGGCTGGACAAACCTTGGTTGTTCAAAAATGGCGTCCCAATTTTGATCCCAATAATGAAAAAATAAATAATATGGCTGTATGGGTGAGAATTTTGGGTGTACCTGTTAGATATTTCAAGGATTATACACTTAAGGTGATATTTGTCCATGTATACGTGGTACAATCCAACAAGAGAATTCCACTCCTGCTCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

96

Amino Acids

11.1

Weight (kDa)

9.66

Isoelectric Point (pI)

31.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 12 - 49 2.3e-07 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 246
AclWI GGATC 1 cut(s) 134
AcsI RAATTY 3 cut(s) 41, 183, 270
AcyI GRCGYC 1 cut(s) 127
AfaI GTAC 2 cut(s) 195, 255
AflII CTTAAG 1 cut(s) 224
AgsI TTSAA 2 cut(s) 119, 211
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
AlwI GGATC 1 cut(s) 134
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 3 cut(s) 41, 183, 270
ArsI GACNNNNNNTTYG 2 cut(s) 112, 144
AspS9I GGNCC 2 cut(s) 15, 83
AsuHPI GGTGA 2 cut(s) 190, 241
AvaII GGWCC 1 cut(s) 83
BbvI GCAGC 1 cut(s) 35
BfaI CTAG 1 cut(s) 50
BfrI CTTAAG 1 cut(s) 224
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
Bme18I GGWCC 1 cut(s) 83
BmgT120I GGNCC 2 cut(s) 15, 83
BmiI GGNNCC 1 cut(s) 6
BsaAI YACGTR 1 cut(s) 250
BsaHI GRCGYC 1 cut(s) 127
BsaJI CCNNGG 3 cut(s) 18, 86, 108
BseDI CCNNGG 3 cut(s) 18, 86, 108
BseXI GCAGC 1 cut(s) 35
BshFI GGCC 1 cut(s) 16
BslFI GGGAC 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 1 cut(s) 16
Bsp143I GATC 3 cut(s) 28, 58, 139
BspANI GGCC 1 cut(s) 16
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 134
BspTI CTTAAG 1 cut(s) 224
BssECI CCNNGG 3 cut(s) 18, 86, 108
BssMI GATC 3 cut(s) 28, 58, 139
BssNAI GTATAC 1 cut(s) 247
BssNI GRCGYC 1 cut(s) 127
BssT1I CCWWGG 3 cut(s) 18, 86, 108
Bst1107I GTATAC 1 cut(s) 247
BstACI GRCGYC 1 cut(s) 127
BstAFI CTTAAG 1 cut(s) 224
BstBAI YACGTR 1 cut(s) 250
BstKTI GATC 3 cut(s) 31, 61, 142
BstMBI GATC 3 cut(s) 28, 58, 139
BstV1I GCAGC 1 cut(s) 35
BstZ17I GTATAC 1 cut(s) 247
BsuRI GGCC 1 cut(s) 16
Cfr13I GGNCC 2 cut(s) 15, 83
CseI GACGC 1 cut(s) 116
Csp6I GTAC 2 cut(s) 194, 254
CviAII CATG 1 cut(s) 242
CviJI RGCY 4 cut(s) 16, 26, 98, 170
CviKI_1 RGCY 4 cut(s) 16, 26, 98, 170
CviQI GTAC 2 cut(s) 194, 254
DpnI GATC 3 cut(s) 30, 60, 141
DpnII GATC 3 cut(s) 28, 58, 139
Eco130I CCWWGG 3 cut(s) 18, 86, 108
Eco47I GGWCC 1 cut(s) 83
EcoO109I RGGNCCY 2 cut(s) 15, 83
EcoRI GAATTC 1 cut(s) 270
EcoT14I CCWWGG 3 cut(s) 18, 86, 108
ErhI CCWWGG 3 cut(s) 18, 86, 108
FaeI CATG 1 cut(s) 245
FaiI YATR 6 cut(s) 76, 167, 175, 219, 243, 247
FaqI GGGAC 1 cut(s) 114
FatI CATG 1 cut(s) 241
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 1 cut(s) 24
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 1 cut(s) 50
GluI GCNGC 1 cut(s) 24
HaeIII GGCC 1 cut(s) 16
HgaI GACGC 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 127
Hin1II CATG 1 cut(s) 245
HinfI GANTC 2 cut(s) 53, 91
HphI GGTGA 2 cut(s) 190, 241
Hpy166II GTNNAC 2 cut(s) 194, 247
Hpy188I TCNGA 1 cut(s) 58
Hpy188III TCNNGA 1 cut(s) 50
Hpy8I GTNNAC 2 cut(s) 194, 247
HpyCH4IV ACGT 1 cut(s) 249
HpySE526I ACGT 1 cut(s) 249
Hsp92I GRCGYC 1 cut(s) 127
Hsp92II CATG 1 cut(s) 245
Kzo9I GATC 3 cut(s) 28, 58, 139
LpnPI CCDG 3 cut(s) 80, 84, 210
Lsp1109I GCAGC 1 cut(s) 35
MaeI CTAG 1 cut(s) 50
MaeII ACGT 1 cut(s) 249
MalI GATC 3 cut(s) 30, 60, 141
MboI GATC 3 cut(s) 28, 58, 139
MluCI AATT 4 cut(s) 41, 133, 183, 270
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 2 cut(s) 19, 74
MseI TTAA 3 cut(s) 39, 63, 225
MspA1I CMGCKG 1 cut(s) 26
MspCI CTTAAG 1 cut(s) 224
NdeII GATC 3 cut(s) 28, 58, 139
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 1 cut(s) 6
PfeI GAWTC 2 cut(s) 53, 91
PkrI GCNGC 1 cut(s) 25
Ppu21I YACGTR 1 cut(s) 250
PpuMI RGGWCCY 1 cut(s) 83
Psp5II RGGWCCY 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 15, 83
PspPPI RGGWCCY 1 cut(s) 83
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 2 cut(s) 195, 255
RsaNI GTAC 2 cut(s) 194, 254
SaqAI TTAA 3 cut(s) 39, 63, 225
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 3 cut(s) 28, 58, 139
Sau96I GGNCC 2 cut(s) 15, 83
SetI ASST 6 cut(s) 28, 85, 110, 199, 231, 252
SinI GGWCC 1 cut(s) 83
SmlI CTYRAG 2 cut(s) 10, 224
SmoI CTYRAG 2 cut(s) 10, 224
Sse9I AATT 4 cut(s) 41, 133, 183, 270
SspMI CTAG 1 cut(s) 50
StyI CCWWGG 3 cut(s) 18, 86, 108
TaiI ACGT 1 cut(s) 252
TaqI TCGA 1 cut(s) 31
TasI AATT 4 cut(s) 41, 133, 183, 270
TfiI GAWTC 2 cut(s) 53, 91
Tru1I TTAA 3 cut(s) 39, 63, 225
Tru9I TTAA 3 cut(s) 39, 63, 225
TseI GCWGC 1 cut(s) 23
TspDTI ATGAA 1 cut(s) 165
Vha464I CTTAAG 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 83
XapI RAATTY 3 cut(s) 41, 183, 270
XbaI TCTAGA 1 cut(s) 49
XmiI GTMKAC 1 cut(s) 246
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.