Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0016475

Physical Location & Seq

Genomic Coordinates Reverse (-)

32361343 .. 32363689

Gene Structure 2347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0186300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGAAAAAGTCTCCATCAAAGAAGATTAAGACTCCAAGAAAAGAGGAGAAGTTGGTAAATGGCTTGCCGGAATTTACCATAGTTGAGGTTGTCAATGGTTCCAACCCGTCCAAGGCATCAATTGTCTATGCTTGTAAGAATAGCTCTATGAGTCTTGTGGAAGTACTTAGCTTTAGCGTATCACAATTGCGTGCTCGACGTCTTAAGTTAGGTAAAATATATTGTCTGCAAGGCGAGGATGAGTGTTGGAGGCTGCCATTCCCCCCTGTAGCTTGGAACCAGAAGATTTGTCTCCCCAAGTCCATGGGTGGATTAGGCATCAAACCTGCTGCTCATTTCAACTTAGTTATTCTAGCTAAGTTAGGTTGGAAGATAATCTCTGACAAGAACAATTGGTTGCTAAGACCAACCATTCCATGGCCTGGAAGGGAATCCTGGAAAGTAGGGACCTTCTTCTGCAAGTTTCCTATTATCAATCTTGTGCCTACTAATAGAAGAGGCAATATTGATCTTGATGAAAATTCTGCTATTTGGCTCCAATTTGATTCTAATAATGCTCATTCAAGGGGAAATTTTTTGAATGAAATCTCGAAATTAAACATCCCTCCAAAAGCTAAGATTTTTGCTTGCCTTTTGACAAGGGGAAGACTGAAAACTAGAGCAAGAATTGCCCGTTTTGCTTCAAATTGTGATGTTAGCTACCCTCATTGTAGCCAAGGGGATGAGGACTTAAACCACCTCTTCTTCTCCAGCCCCTTTGCTACAAGAGTTTGGCAAGCTGTTAGTATTAATTTGCAGAATTACTCTTATTTTGATGACTGGTTCCTCTCCTGGTTCAGGTTTGGCCACCAGAAACAACTACTGCATCTGAGTCCGATTAGAATTAACAATCCTACGAAAGATAGACCTTCAATTTCGCATACCAACATCATTCGTTGGTCCCCTCCTCCTCCCGGTTTTATCAATCTCAACTTTGGCGGGTCTGTCATCAACAGTAAGCATGTTGTTACCGGTTTTGTTCCAAGAGACCACGATGCTTCCCCCATTTTTGCAGGTTCTAGAGCCATTAGTAACTTCTCGGTCCCCATTGTTGAGGGTAGTGCAGTTAGAGATGGCCTGTATCATGCTTTCATCCTCAATTACCAGAAAATCGTTGTGGAAGGTGATTCCAAGCTGATCATTGACACCATTAACAAGAAGTGCATTCCCCTTTGGCGTTTGCGAACCCTGATCGATCAAGGATATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

416

Amino Acids

47.15

Weight (kDa)

9.86

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	188 - 258	2.8e-11	zinc-binding in reverse transcriptase
RVT_3	PF13456	334 - 400	1.6e-07	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07656
prunus_persica	Prupe.2G199900_v2.0.a1 Prupe.7G019600_v2.0.a1
pyrus_communis	pycom07g06830
rosa_chinensis	RchiOBHm_Chr2g0089011
rosa_multiflora	Rmu_co8469645.1_g000001 Rmu_sc0000927.1_g000013 Rmu_sc0001192.1_g000009 Rmu_sc0001947.1_g000005 Rmu_sc0004165.1_g000033 Rmu_sc0012042.1_g000003
rosa_rugosa	Rorug01G0073000 Rorug04G0155000 Rorug04G0186300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	202
Acc36I	ACCTGC	2 cut(s)	334, 1043
AccB7I	CCANNNNNTGG	2 cut(s)	417, 422
AciI	CCGC	1 cut(s)	978
AcoI	YGGCCR	1 cut(s)	844
AcsI	RAATTY	3 cut(s)	71, 520, 571
AcyI	GRCGYC	1 cut(s)	199
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	5 cut(s)	112, 417, 422, 837, 953
AflII	CTTAAG	1 cut(s)	203
AgeI	ACCGGT	1 cut(s)	1010
AgsI	TTSAA	5 cut(s)	340, 564, 580, 684, 912
AjnI	CCWGG	3 cut(s)	421, 434, 830
AluBI	AGCT	8 cut(s)	144, 171, 272, 356, 614, 699, 779, 1174
AluI	AGCT	8 cut(s)	144, 171, 272, 356, 614, 699, 779, 1174
Alw21I	GWGCWC	1 cut(s)	196
Alw26I	GTCTC	3 cut(s)	15, 296, 1020
AoxI	GGCC	3 cut(s)	419, 844, 1114
ApeKI	GCWGC	2 cut(s)	253, 329
ApoI	RAATTY	3 cut(s)	71, 520, 571
AseI	ATTAAT	1 cut(s)	789
AsiGI	ACCGGT	1 cut(s)	1010
AspS9I	GGNCC	3 cut(s)	447, 939, 1081
AsuC2I	CCSGG	1 cut(s)	954
AsuHPI	GGTGA	1 cut(s)	1175
AvaII	GGWCC	3 cut(s)	447, 939, 1081
BalI	TGGCCA	1 cut(s)	846
BbsI	GAAGAC	1 cut(s)	652
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	2 cut(s)	240, 316
BccI	CCATC	2 cut(s)	22, 1106
BciT130I	CCWGG	3 cut(s)	423, 436, 832
BclI	TGATCA	1 cut(s)	1176
BcnI	CCSGG	1 cut(s)	954
BcoDI	GTCTC	3 cut(s)	15, 296, 1020
BfaI	CTAG	3 cut(s)	353, 657, 1059
BfmI	CTRYAG	1 cut(s)	267
BfrI	CTTAAG	1 cut(s)	203
BfuAI	ACCTGC	2 cut(s)	334, 1043
BisI	GCNGC	2 cut(s)	254, 330
BlsI	GCNGC	2 cut(s)	255, 331
BmcAI	AGTACT	1 cut(s)	165
Bme1390I	CCNGG	4 cut(s)	423, 436, 832, 954
Bme18I	GGWCC	3 cut(s)	447, 939, 1081
BmgT120I	GGNCC	3 cut(s)	447, 939, 1081
BmiI	GGNNCC	7 cut(s)	100, 278, 448, 536, 824, 941, 1083
BmrFI	CCNGG	4 cut(s)	423, 436, 832, 954
BmsI	GCATC	4 cut(s)	125, 327, 874, 1024
BpiI	GAAGAC	1 cut(s)	652
BpmI	CTGGAG	1 cut(s)	733
BpuMI	CCSGG	1 cut(s)	954
Bsa29I	ATCGAT	1 cut(s)	1233
BsaHI	GRCGYC	1 cut(s)	199
BsaI	GGTCTC	1 cut(s)	1020
BsaJI	CCNNGG	4 cut(s)	111, 303, 416, 715
BsaWI	WCCGGW	1 cut(s)	1010
Bsc4I	CCNNNNNNNGG	5 cut(s)	112, 417, 422, 837, 953
Bse118I	RCCGGY	1 cut(s)	1010
Bse1I	ACTGG	1 cut(s)	824
BseBI	CCWGG	3 cut(s)	423, 436, 832
BseCI	ATCGAT	1 cut(s)	1233
BseDI	CCNNGG	4 cut(s)	111, 303, 416, 715
BseGI	GGATG	4 cut(s)	244, 600, 727, 1131
BseLI	CCNNNNNNNGG	5 cut(s)	112, 417, 422, 837, 953
BseMII	CTCAG	1 cut(s)	860
BseNI	ACTGG	1 cut(s)	824
BseRI	GAGGAG	3 cut(s)	59, 936, 939
BseXI	GCAGC	2 cut(s)	240, 316
BsgI	GTGCAG	1 cut(s)	1122
BshFI	GGCC	3 cut(s)	421, 846, 1116
BshTI	ACCGGT	1 cut(s)	1010
BshVI	ATCGAT	1 cut(s)	1233
BsiHKAI	GWGCWC	1 cut(s)	196
BsiSI	CCGG	3 cut(s)	68, 954, 1011
BslFI	GGGAC	3 cut(s)	460, 925, 1067
BslI	CCNNNNNNNGG	5 cut(s)	112, 417, 422, 837, 953
BsmAI	GTCTC	3 cut(s)	15, 296, 1020
BsmFI	GGGAC	3 cut(s)	460, 925, 1067
BsmI	GAATGC	1 cut(s)	1203
BsnI	GGCC	3 cut(s)	421, 846, 1116
Bso31I	GGTCTC	1 cut(s)	1020
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	4 cut(s)	508, 1176, 1230, 1234
Bsp19I	CCATGG	2 cut(s)	303, 416
BspACI	CCGC	1 cut(s)	978
BspANI	GGCC	3 cut(s)	421, 846, 1116
BspCNI	CTCAG	1 cut(s)	861
BspDI	ATCGAT	1 cut(s)	1233
BspLI	GGNNCC	7 cut(s)	100, 278, 448, 536, 824, 941, 1083
BspMI	ACCTGC	2 cut(s)	334, 1043
BspTI	CTTAAG	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	1020
BsrFI	RCCGGY	1 cut(s)	1010
BsrI	ACTGG	1 cut(s)	824
BssAI	RCCGGY	1 cut(s)	1010
BssECI	CCNNGG	4 cut(s)	111, 303, 416, 715
BssMI	GATC	4 cut(s)	508, 1176, 1230, 1234
BssNI	GRCGYC	1 cut(s)	199
BssT1I	CCWWGG	4 cut(s)	111, 303, 416, 715
Bst2UI	CCWGG	3 cut(s)	423, 436, 832
Bst4CI	ACNGT	1 cut(s)	995
Bst6I	CTCTTC	2 cut(s)	490, 746
BstACI	GRCGYC	1 cut(s)	199
BstAFI	CTTAAG	1 cut(s)	203
BstAPI	GCANNNNNTGC	1 cut(s)	668
BstC8I	GCNNGC	4 cut(s)	65, 192, 628, 777
BstDEI	CTNAG	7 cut(s)	167, 343, 357, 401, 615, 869, 1248
BstDSI	CCRYGG	2 cut(s)	303, 416
BstENI	CCTNNNNNAGG	1 cut(s)	835
BstF5I	GGATG	4 cut(s)	244, 600, 727, 1131
BstKTI	GATC	4 cut(s)	511, 1179, 1233, 1237
BstMAI	GTCTC	3 cut(s)	15, 296, 1020
BstMBI	GATC	4 cut(s)	508, 1176, 1230, 1234
BstMWI	GCNNNNNNNGC	2 cut(s)	668, 677
BstNI	CCWGG	3 cut(s)	423, 436, 832
BstNSI	RCATGY	1 cut(s)	1004
BstSCI	CCNGG	4 cut(s)	421, 434, 830, 952
BstSFI	CTRYAG	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	240, 316
BstV2I	GAAGAC	1 cut(s)	652
BstXI	CCANNNNNNTGG	1 cut(s)	304
Bsu15I	ATCGAT	1 cut(s)	1233
BsuRI	GGCC	3 cut(s)	421, 846, 1116
BsuTUI	ATCGAT	1 cut(s)	1233
BtgI	CCRYGG	2 cut(s)	303, 416
BtsCI	GGATG	4 cut(s)	244, 600, 727, 1131
BveI	ACCTGC	2 cut(s)	334, 1043
Cac8I	GCNNGC	4 cut(s)	65, 192, 628, 777
Cfr10I	RCCGGY	1 cut(s)	1010
Cfr13I	GGNCC	3 cut(s)	447, 939, 1081
ClaI	ATCGAT	1 cut(s)	1233
Csp6I	GTAC	1 cut(s)	164
CspAI	ACCGGT	1 cut(s)	1010
CviAII	CATG	4 cut(s)	304, 417, 1001, 1124
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	7 cut(s)	167, 343, 357, 401, 615, 869, 1248
DpnI	GATC	4 cut(s)	510, 1178, 1232, 1236
DpnII	GATC	4 cut(s)	508, 1176, 1230, 1234
EaeI	YGGCCR	1 cut(s)	844
Eam1104I	CTCTTC	2 cut(s)	490, 746
EarI	CTCTTC	2 cut(s)	490, 746
Eco130I	CCWWGG	4 cut(s)	111, 303, 416, 715
Eco31I	GGTCTC	1 cut(s)	1020
Eco32I	GATATC	1 cut(s)	1244
Eco47I	GGWCC	3 cut(s)	447, 939, 1081
EcoNI	CCTNNNNNAGG	1 cut(s)	835
EcoO109I	RGGNCCY	1 cut(s)	447
EcoRII	CCWGG	3 cut(s)	421, 434, 830
EcoRV	GATATC	1 cut(s)	1244
EcoT14I	CCWWGG	4 cut(s)	111, 303, 416, 715
ErhI	CCWWGG	4 cut(s)	111, 303, 416, 715
FaeI	CATG	4 cut(s)	307, 420, 1004, 1127
FaiI	YATR	9 cut(s)	80, 129, 149, 220, 305, 418, 921, 1002, 1125
FaqI	GGGAC	3 cut(s)	460, 925, 1067
FatI	CATG	4 cut(s)	303, 416, 1000, 1123
FauI	CCCGC	1 cut(s)	971
FbaI	TGATCA	1 cut(s)	1176
Fnu4HI	GCNGC	2 cut(s)	254, 330
FokI	GGATG	4 cut(s)	251, 587, 734, 1118
Fsp4HI	GCNGC	2 cut(s)	254, 330
FspBI	CTAG	3 cut(s)	353, 657, 1059
GluI	GCNGC	2 cut(s)	254, 330
GsuI	CTGGAG	1 cut(s)	733
HaeIII	GGCC	3 cut(s)	421, 846, 1116
HapII	CCGG	3 cut(s)	68, 954, 1011
Hin1I	GRCGYC	1 cut(s)	199
Hin1II	CATG	4 cut(s)	307, 420, 1004, 1127
HinfI	GANTC	6 cut(s)	31, 151, 431, 545, 871, 1166
HpaII	CCGG	3 cut(s)	68, 954, 1011
HphI	GGTGA	1 cut(s)	1175
Hpy188I	TCNGA	3 cut(s)	382, 870, 876
Hpy188III	TCNNGA	3 cut(s)	512, 589, 1059
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	4 cut(s)	420, 460, 918, 1154
HpyCH4III	ACNGT	1 cut(s)	995
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	7 cut(s)	229, 459, 796, 865, 1052, 1103, 1203
HpyF10VI	GCNNNNNNNGC	2 cut(s)	668, 677
HpyF3I	CTNAG	7 cut(s)	167, 343, 357, 401, 615, 869, 1248
HpySE526I	ACGT	1 cut(s)	199
Hsp92I	GRCGYC	1 cut(s)	199
Hsp92II	CATG	4 cut(s)	307, 420, 1004, 1127
Ksp22I	TGATCA	1 cut(s)	1176
Kzo9I	GATC	4 cut(s)	508, 1176, 1230, 1234
LmnI	GCTCC	1 cut(s)	540
Lsp1109I	GCAGC	2 cut(s)	240, 316
LweI	GCATC	4 cut(s)	125, 327, 874, 1024
MaeI	CTAG	3 cut(s)	353, 657, 1059
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	2 cut(s)	1006, 1070
MalI	GATC	4 cut(s)	510, 1178, 1232, 1236
MboI	GATC	4 cut(s)	508, 1176, 1230, 1234
MboII	GAAGA	8 cut(s)	34, 295, 382, 445, 507, 657, 733, 736
MfeI	CAATTG	3 cut(s)	120, 185, 391
MhlI	GDGCHC	1 cut(s)	196
MlsI	TGGCCA	1 cut(s)	846
MluNI	TGGCCA	1 cut(s)	846
MlyI	GAGTC	3 cut(s)	25, 160, 880
MmeI	TCCRAC	3 cut(s)	126, 227, 347
Mox20I	TGGCCA	1 cut(s)	846
MscI	TGGCCA	1 cut(s)	846
MseI	TTAA	7 cut(s)	27, 204, 596, 731, 789, 885, 1191
Msp20I	TGGCCA	1 cut(s)	846
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	3 cut(s)	68, 954, 1011
MspR9I	CCNGG	4 cut(s)	423, 436, 832, 954
MunI	CAATTG	3 cut(s)	120, 185, 391
Mva1269I	GAATGC	1 cut(s)	1203
MvaI	CCWGG	3 cut(s)	423, 436, 832
MwoI	GCNNNNNNNGC	2 cut(s)	668, 677
NciI	CCSGG	1 cut(s)	954
NcoI	CCATGG	2 cut(s)	303, 416
NdeII	GATC	4 cut(s)	508, 1176, 1230, 1234
NlaIII	CATG	4 cut(s)	307, 420, 1004, 1127
NlaIV	GGNNCC	7 cut(s)	100, 278, 448, 536, 824, 941, 1083
NspI	RCATGY	1 cut(s)	1004
PctI	GAATGC	1 cut(s)	1203
PfeI	GAWTC	3 cut(s)	431, 545, 1166
PflMI	CCANNNNNTGG	2 cut(s)	417, 422
PfoI	TCCNGGA	1 cut(s)	434
PinAI	ACCGGT	1 cut(s)	1010
PkrI	GCNGC	2 cut(s)	255, 331
PleI	GAGTC	3 cut(s)	25, 159, 879
PpsI	GAGTC	3 cut(s)	25, 159, 879
PpuMI	RGGWCCY	1 cut(s)	447
PshBI	ATTAAT	1 cut(s)	789
Psp5II	RGGWCCY	1 cut(s)	447
Psp6I	CCWGG	3 cut(s)	421, 434, 830
PspGI	CCWGG	3 cut(s)	421, 434, 830
PspN4I	GGNNCC	7 cut(s)	100, 278, 448, 536, 824, 941, 1083
PspPI	GGNCC	3 cut(s)	447, 939, 1081
PspPPI	RGGWCCY	1 cut(s)	447
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
SaqAI	TTAA	7 cut(s)	27, 204, 596, 731, 789, 885, 1191
SatI	GCNGC	2 cut(s)	254, 330
Sau3AI	GATC	4 cut(s)	508, 1176, 1230, 1234
Sau96I	GGNCC	3 cut(s)	447, 939, 1081
ScaI	AGTACT	1 cut(s)	165
SchI	GAGTC	3 cut(s)	25, 160, 880
ScrFI	CCNGG	4 cut(s)	423, 436, 832, 954
SduI	GDGCHC	1 cut(s)	196
SfaNI	GCATC	4 cut(s)	125, 327, 874, 1024
SfcI	CTRYAG	1 cut(s)	267
SinI	GGWCC	3 cut(s)	447, 939, 1081
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
SsiI	CCGC	1 cut(s)	978
SspI	AATATT	1 cut(s)	505
SspMI	CTAG	3 cut(s)	353, 657, 1059
StyD4I	CCNGG	4 cut(s)	421, 434, 830, 952
StyI	CCWWGG	4 cut(s)	111, 303, 416, 715
TaaI	ACNGT	1 cut(s)	995
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	3 cut(s)	196, 590, 1233
TaqII	GACCGA	1 cut(s)	1069
TatI	WGTACW	1 cut(s)	163
TfiI	GAWTC	3 cut(s)	431, 545, 1166
Tru1I	TTAA	7 cut(s)	27, 204, 596, 731, 789, 885, 1191
Tru9I	TTAA	7 cut(s)	27, 204, 596, 731, 789, 885, 1191
TseI	GCWGC	2 cut(s)	253, 329
TspDTI	ATGAA	4 cut(s)	17, 531, 597, 1120
Van91I	CCANNNNNTGG	2 cut(s)	417, 422
Vha464I	CTTAAG	1 cut(s)	203
VpaK11BI	GGWCC	3 cut(s)	447, 939, 1081
VspI	ATTAAT	1 cut(s)	789
XagI	CCTNNNNNAGG	1 cut(s)	835
XapI	RAATTY	3 cut(s)	71, 520, 571
XbaI	TCTAGA	1 cut(s)	1058
XceI	RCATGY	1 cut(s)	1004
XcmI	CCANNNNNNNNNTGG	1 cut(s)	414
XspI	CTAG	3 cut(s)	353, 657, 1059
ZraI	GACGTC	1 cut(s)	200
ZrmI	AGTACT	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.