zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G55340 |
| fragaria_vesca | FvH4_7g21531 |
| malus_domestica | MD01G1122100.v1.1 MD07G1191600.v1.1 |
| prunus_persica | Prupe.2G229600_v2.0.a1 Prupe.2G229700_v2.0.a1 |
| pyrus_communis | pycom01g14890 pycom07g18100 |
| rosa_chinensis | RchiOBHm_Chr1g0365851 |
| rosa_laevigata | RLG00000027386 |
| rosa_multiflora | Rmu_sc0023137.1_g000001 Rmu_sc0041703.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00290800 |
| rosa_rugosa | Rorug01G0325000 |
| rosa_samantha | Rh1AG334000 Rh1BG294600 Rh1CG311300 Rh1DG327000 |
| rosa_wichuraiana | Rw1G029630 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1373 |
| AciI | CCGC | 5 cut(s) | 81, 233, 374, 894, 1692 |
| AcoI | YGGCCR | 1 cut(s) | 934 |
| AcsI | RAATTY | 6 cut(s) | 265, 1081, 1178, 1201, 1318, 1333 |
| AcuI | CTGAAG | 7 cut(s) | 44, 94, 106, 191, 837, 1133, 1926 |
| AcvI | CACGTG | 2 cut(s) | 947, 1198 |
| AfaI | GTAC | 7 cut(s) | 1061, 1290, 1342, 1534, 1726, 1759, 1792 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 268, 845, 1370 |
| AjiI | CACGTC | 1 cut(s) | 1908 |
| AjnI | CCWGG | 1 cut(s) | 294 |
| Alw21I | GWGCWC | 1 cut(s) | 294 |
| Alw26I | GTCTC | 3 cut(s) | 683, 974, 1220 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 283, 890, 1415, 1607, 1811, 1859 |
| Ama87I | CYCGRG | 1 cut(s) | 1014 |
| AoxI | GGCC | 1 cut(s) | 934 |
| ApeKI | GCWGC | 3 cut(s) | 890, 1514, 1811 |
| ApoI | RAATTY | 6 cut(s) | 265, 1081, 1178, 1201, 1318, 1333 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 984 |
| AspS9I | GGNCC | 2 cut(s) | 89, 1308 |
| AsuHPI | GGTGA | 7 cut(s) | 388, 668, 989, 1187, 1490, 1682, 1934 |
| AsuII | TTCGAA | 1 cut(s) | 784 |
| AvaI | CYCGRG | 1 cut(s) | 1014 |
| AvaII | GGWCC | 2 cut(s) | 89, 1308 |
| AxyI | CCTNAGG | 1 cut(s) | 70 |
| BalI | TGGCCA | 1 cut(s) | 936 |
| BanI | GGYRCC | 1 cut(s) | 1373 |
| BanII | GRGCYC | 1 cut(s) | 276 |
| BbrPI | CACGTG | 2 cut(s) | 947, 1198 |
| BbsI | GAAGAC | 2 cut(s) | 887, 1270 |
| Bbv12I | GWGCWC | 1 cut(s) | 294 |
| BbvI | GCAGC | 3 cut(s) | 877, 1526, 1798 |
| BccI | CCATC | 6 cut(s) | 141, 142, 236, 647, 911, 1889 |
| BceAI | ACGGC | 1 cut(s) | 1613 |
| BciT130I | CCWGG | 1 cut(s) | 296 |
| BcoDI | GTCTC | 3 cut(s) | 683, 974, 1220 |
| BfaI | CTAG | 2 cut(s) | 47, 194 |
| BfmI | CTRYAG | 3 cut(s) | 1401, 1593, 1851 |
| BisI | GCNGC | 5 cut(s) | 82, 891, 894, 1515, 1812 |
| BlsI | GCNGC | 5 cut(s) | 83, 892, 895, 1516, 1813 |
| BmcAI | AGTACT | 1 cut(s) | 1759 |
| Bme1390I | CCNGG | 1 cut(s) | 296 |
| Bme18I | GGWCC | 2 cut(s) | 89, 1308 |
| BmeT110I | CYCGRG | 1 cut(s) | 1014 |
| BmgBI | CACGTC | 1 cut(s) | 1908 |
| BmgT120I | GGNCC | 2 cut(s) | 89, 1308 |
| BmiI | GGNNCC | 5 cut(s) | 91, 273, 1309, 1310, 1375 |
| BmrFI | CCNGG | 1 cut(s) | 296 |
| BmrI | ACTGGG | 1 cut(s) | 271 |
| BmuI | ACTGGG | 1 cut(s) | 271 |
| BpiI | GAAGAC | 2 cut(s) | 887, 1270 |
| Bpu10I | CCTNAGC | 1 cut(s) | 58 |
| Bpu14I | TTCGAA | 1 cut(s) | 784 |
| BsaAI | YACGTR | 2 cut(s) | 947, 1198 |
| BsaJI | CCNNGG | 3 cut(s) | 771, 906, 1183 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 263, 293 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 268, 845, 1370 |
| Bse1I | ACTGG | 9 cut(s) | 277, 397, 1388, 1471, 1580, 1663, 1772, 1805, 1838 |
| Bse21I | CCTNAGG | 1 cut(s) | 70 |
| BseBI | CCWGG | 1 cut(s) | 296 |
| BseDI | CCNNGG | 3 cut(s) | 771, 906, 1183 |
| BseGI | GGATG | 5 cut(s) | 466, 658, 730, 1111, 1688 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 268, 845, 1370 |
| BseMII | CTCAG | 4 cut(s) | 821, 985, 1092, 1416 |
| BseNI | ACTGG | 9 cut(s) | 277, 397, 1388, 1471, 1580, 1663, 1772, 1805, 1838 |
| BseRI | GAGGAG | 4 cut(s) | 488, 521, 572, 686 |
| BseXI | GCAGC | 3 cut(s) | 877, 1526, 1798 |
| BsgI | GTGCAG | 1 cut(s) | 1308 |
| BshFI | GGCC | 1 cut(s) | 936 |
| BshNI | GGYRCC | 1 cut(s) | 1373 |
| BsiHKAI | GWGCWC | 1 cut(s) | 294 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1014 |
| BslFI | GGGAC | 4 cut(s) | 75, 1321, 1500, 1692 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 268, 845, 1370 |
| BsmAI | GTCTC | 3 cut(s) | 683, 974, 1220 |
| BsmFI | GGGAC | 4 cut(s) | 75, 1321, 1500, 1692 |
| BsmI | GAATGC | 1 cut(s) | 753 |
| BsnI | GGCC | 1 cut(s) | 936 |
| BsoBI | CYCGRG | 1 cut(s) | 1014 |
| Bsp119I | TTCGAA | 1 cut(s) | 784 |
| Bsp1286I | GDGCHC | 2 cut(s) | 276, 294 |
| Bsp143I | GATC | 2 cut(s) | 1108, 1243 |
| BspACI | CCGC | 5 cut(s) | 81, 233, 374, 894, 1692 |
| BspANI | GGCC | 1 cut(s) | 936 |
| BspCNI | CTCAG | 4 cut(s) | 822, 984, 1093, 1417 |
| BspLI | GGNNCC | 5 cut(s) | 91, 273, 1309, 1310, 1375 |
| BspT104I | TTCGAA | 1 cut(s) | 784 |
| BspT107I | GGYRCC | 1 cut(s) | 1373 |
| BsrI | ACTGG | 9 cut(s) | 277, 397, 1388, 1471, 1580, 1663, 1772, 1805, 1838 |
| BssECI | CCNNGG | 3 cut(s) | 771, 906, 1183 |
| BssMI | GATC | 2 cut(s) | 1108, 1243 |
| BssT1I | CCWWGG | 1 cut(s) | 906 |
| Bst2UI | CCWGG | 1 cut(s) | 296 |
| Bst4CI | ACNGT | 2 cut(s) | 704, 845 |
| Bst6I | CTCTTC | 5 cut(s) | 113, 485, 491, 608, 636 |
| BstBAI | YACGTR | 2 cut(s) | 947, 1198 |
| BstBI | TTCGAA | 1 cut(s) | 784 |
| BstC8I | GCNNGC | 2 cut(s) | 1230, 1981 |
| BstDEI | CTNAG | 9 cut(s) | 35, 58, 70, 182, 205, 830, 971, 1101, 1425 |
| BstF5I | GGATG | 5 cut(s) | 466, 658, 730, 1111, 1688 |
| BstKTI | GATC | 2 cut(s) | 1111, 1246 |
| BstMAI | GTCTC | 3 cut(s) | 683, 974, 1220 |
| BstMBI | GATC | 2 cut(s) | 1108, 1243 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 81, 280, 289, 396, 902, 1016 |
| BstNI | CCWGG | 1 cut(s) | 296 |
| BstNSI | RCATGY | 3 cut(s) | 1467, 1659, 1987 |
| BstSCI | CCNGG | 1 cut(s) | 294 |
| BstSFI | CTRYAG | 3 cut(s) | 1401, 1593, 1851 |
| BstV1I | GCAGC | 3 cut(s) | 877, 1526, 1798 |
| BstV2I | GAAGAC | 2 cut(s) | 887, 1270 |
| Bsu36I | CCTNAGG | 1 cut(s) | 70 |
| BsuRI | GGCC | 1 cut(s) | 936 |
| BtrI | CACGTC | 1 cut(s) | 1908 |
| BtsCI | GGATG | 5 cut(s) | 466, 658, 730, 1111, 1688 |
| BtsIMutI | CAGTG | 7 cut(s) | 390, 709, 850, 1447, 1478, 1639, 1670 |
| Cac8I | GCNNGC | 2 cut(s) | 1230, 1981 |
| CaiI | CAGNNNCTG | 6 cut(s) | 283, 890, 1415, 1607, 1811, 1859 |
| Cfr13I | GGNCC | 2 cut(s) | 89, 1308 |
| CseI | GACGC | 1 cut(s) | 1234 |
| Csp6I | GTAC | 7 cut(s) | 1060, 1289, 1341, 1533, 1725, 1758, 1791 |
| CviAII | CATG | 4 cut(s) | 1089, 1464, 1656, 1984 |
| CviQI | GTAC | 7 cut(s) | 1060, 1289, 1341, 1533, 1725, 1758, 1791 |
| DdeI | CTNAG | 9 cut(s) | 35, 58, 70, 182, 205, 830, 971, 1101, 1425 |
| DpnI | GATC | 2 cut(s) | 1110, 1245 |
| DpnII | GATC | 2 cut(s) | 1108, 1243 |
| EaeI | YGGCCR | 1 cut(s) | 934 |
| Eam1104I | CTCTTC | 5 cut(s) | 113, 485, 491, 608, 636 |
| EarI | CTCTTC | 5 cut(s) | 113, 485, 491, 608, 636 |
| Eco130I | CCWWGG | 1 cut(s) | 906 |
| Eco24I | GRGCYC | 1 cut(s) | 276 |
| Eco32I | GATATC | 1 cut(s) | 1140 |
| Eco47I | GGWCC | 2 cut(s) | 89, 1308 |
| Eco57I | CTGAAG | 7 cut(s) | 44, 94, 106, 191, 837, 1133, 1926 |
| Eco72I | CACGTG | 2 cut(s) | 947, 1198 |
| Eco81I | CCTNAGG | 1 cut(s) | 70 |
| Eco88I | CYCGRG | 1 cut(s) | 1014 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1308 |
| EcoRI | GAATTC | 2 cut(s) | 265, 1178 |
| EcoRII | CCWGG | 1 cut(s) | 294 |
| EcoRV | GATATC | 1 cut(s) | 1140 |
| EcoT14I | CCWWGG | 1 cut(s) | 906 |
| EcoT38I | GRGCYC | 1 cut(s) | 276 |
| ErhI | CCWWGG | 1 cut(s) | 906 |
| FaeI | CATG | 4 cut(s) | 1092, 1467, 1659, 1987 |
| FaqI | GGGAC | 4 cut(s) | 75, 1321, 1500, 1692 |
| FatI | CATG | 4 cut(s) | 1088, 1463, 1655, 1983 |
| FauI | CCCGC | 1 cut(s) | 240 |
| Fnu4HI | GCNGC | 5 cut(s) | 82, 891, 894, 1515, 1812 |
| FokI | GGATG | 5 cut(s) | 473, 665, 737, 1118, 1675 |
| FriOI | GRGCYC | 1 cut(s) | 276 |
| Fsp4HI | GCNGC | 5 cut(s) | 82, 891, 894, 1515, 1812 |
| FspBI | CTAG | 2 cut(s) | 47, 194 |
| GluI | GCNGC | 5 cut(s) | 82, 891, 894, 1515, 1812 |
| HaeIII | GGCC | 1 cut(s) | 936 |
| HgaI | GACGC | 1 cut(s) | 1234 |
| Hin1II | CATG | 4 cut(s) | 1092, 1467, 1659, 1987 |
| HinfI | GANTC | 8 cut(s) | 103, 212, 299, 443, 950, 1068, 1571, 1763 |
| HphI | GGTGA | 7 cut(s) | 388, 668, 989, 1187, 1490, 1682, 1934 |
| Hpy166II | GTNNAC | 1 cut(s) | 980 |
| Hpy188III | TCNNGA | 3 cut(s) | 839, 914, 1273 |
| Hpy8I | GTNNAC | 1 cut(s) | 980 |
| HpyCH4III | ACNGT | 2 cut(s) | 704, 845 |
| HpyCH4IV | ACGT | 6 cut(s) | 340, 946, 1197, 1437, 1523, 1907 |
| HpyCH4V | TGCA | 5 cut(s) | 143, 1134, 1325, 1814, 1979 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 81, 280, 289, 396, 902, 1016 |
| HpyF3I | CTNAG | 9 cut(s) | 35, 58, 70, 182, 205, 830, 971, 1101, 1425 |
| HpySE526I | ACGT | 6 cut(s) | 340, 946, 1197, 1437, 1523, 1907 |
| Hsp92II | CATG | 4 cut(s) | 1092, 1467, 1659, 1987 |
| KflI | GGGWCCC | 1 cut(s) | 1308 |
| Kzo9I | GATC | 2 cut(s) | 1108, 1243 |
| LmnI | GCTCC | 7 cut(s) | 271, 297, 354, 673, 920, 1412, 1856 |
| Lsp1109I | GCAGC | 3 cut(s) | 877, 1526, 1798 |
| MaeI | CTAG | 2 cut(s) | 47, 194 |
| MaeII | ACGT | 6 cut(s) | 340, 946, 1197, 1437, 1523, 1907 |
| MaeIII | GTNAC | 4 cut(s) | 304, 788, 1433, 1549 |
| MalI | GATC | 2 cut(s) | 1110, 1245 |
| MboI | GATC | 2 cut(s) | 1108, 1243 |
| MfeI | CAATTG | 1 cut(s) | 1542 |
| MhlI | GDGCHC | 2 cut(s) | 276, 294 |
| MlsI | TGGCCA | 1 cut(s) | 936 |
| MluNI | TGGCCA | 1 cut(s) | 936 |
| MlyI | GAGTC | 2 cut(s) | 293, 452 |
| MmeI | TCCRAC | 2 cut(s) | 727, 1057 |
| Mox20I | TGGCCA | 1 cut(s) | 936 |
| MroXI | GAANNNNTTC | 1 cut(s) | 984 |
| MscI | TGGCCA | 1 cut(s) | 936 |
| MseI | TTAA | 3 cut(s) | 1452, 1644, 1896 |
| Msp20I | TGGCCA | 1 cut(s) | 936 |
| MspR9I | CCNGG | 1 cut(s) | 296 |
| MunI | CAATTG | 1 cut(s) | 1542 |
| Mva1269I | GAATGC | 1 cut(s) | 753 |
| MvaI | CCWGG | 1 cut(s) | 296 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 81, 280, 289, 396, 902, 1016 |
| NdeII | GATC | 2 cut(s) | 1108, 1243 |
| NlaIII | CATG | 4 cut(s) | 1092, 1467, 1659, 1987 |
| NlaIV | GGNNCC | 5 cut(s) | 91, 273, 1309, 1310, 1375 |
| NspI | RCATGY | 3 cut(s) | 1467, 1659, 1987 |
| NspV | TTCGAA | 1 cut(s) | 784 |
| PaeR7I | CTCGAG | 1 cut(s) | 1014 |
| PctI | GAATGC | 1 cut(s) | 753 |
| PdmI | GAANNNNTTC | 1 cut(s) | 984 |
| PfeI | GAWTC | 6 cut(s) | 103, 212, 950, 1068, 1571, 1763 |
| PfoI | TCCNGGA | 1 cut(s) | 294 |
| PkrI | GCNGC | 5 cut(s) | 83, 892, 895, 1516, 1813 |
| PleI | GAGTC | 2 cut(s) | 293, 451 |
| PmaCI | CACGTG | 2 cut(s) | 947, 1198 |
| PmlI | CACGTG | 2 cut(s) | 947, 1198 |
| PpsI | GAGTC | 2 cut(s) | 293, 451 |
| Ppu21I | YACGTR | 2 cut(s) | 947, 1198 |
| PpuMI | RGGWCCY | 1 cut(s) | 1308 |
| Psp5II | RGGWCCY | 1 cut(s) | 1308 |
| Psp6I | CCWGG | 1 cut(s) | 294 |
| PspCI | CACGTG | 2 cut(s) | 947, 1198 |
| PspGI | CCWGG | 1 cut(s) | 294 |
| PspN4I | GGNNCC | 5 cut(s) | 91, 273, 1309, 1310, 1375 |
| PspPI | GGNCC | 2 cut(s) | 89, 1308 |
| PspPPI | RGGWCCY | 1 cut(s) | 1308 |
| PspXI | VCTCGAGB | 1 cut(s) | 1014 |
| PstNI | CAGNNNCTG | 6 cut(s) | 283, 890, 1415, 1607, 1811, 1859 |
| RsaI | GTAC | 7 cut(s) | 1061, 1290, 1342, 1534, 1726, 1759, 1792 |
| RsaNI | GTAC | 7 cut(s) | 1060, 1289, 1341, 1533, 1725, 1758, 1791 |
| SaqAI | TTAA | 3 cut(s) | 1452, 1644, 1896 |
| SatI | GCNGC | 5 cut(s) | 82, 891, 894, 1515, 1812 |
| Sau3AI | GATC | 2 cut(s) | 1108, 1243 |
| Sau96I | GGNCC | 2 cut(s) | 89, 1308 |
| ScaI | AGTACT | 1 cut(s) | 1759 |
| SchI | GAGTC | 2 cut(s) | 293, 452 |
| ScrFI | CCNGG | 1 cut(s) | 296 |
| SduI | GDGCHC | 2 cut(s) | 276, 294 |
| SfcI | CTRYAG | 3 cut(s) | 1401, 1593, 1851 |
| Sfr274I | CTCGAG | 1 cut(s) | 1014 |
| SfuI | TTCGAA | 1 cut(s) | 784 |
| SinI | GGWCC | 2 cut(s) | 89, 1308 |
| SlaI | CTCGAG | 1 cut(s) | 1014 |
| SmlI | CTYRAG | 1 cut(s) | 1014 |
| SmoI | CTYRAG | 1 cut(s) | 1014 |
| SsiI | CCGC | 5 cut(s) | 81, 233, 374, 894, 1692 |
| SspMI | CTAG | 2 cut(s) | 47, 194 |
| StyD4I | CCNGG | 1 cut(s) | 294 |
| StyI | CCWWGG | 1 cut(s) | 906 |
| TaaI | ACNGT | 2 cut(s) | 704, 845 |
| TaiI | ACGT | 6 cut(s) | 343, 949, 1200, 1440, 1526, 1910 |
| TaqI | TCGA | 5 cut(s) | 784, 1015, 1574, 1766, 1832 |
| TatI | WGTACW | 1 cut(s) | 1757 |
| TauI | GCSGC | 2 cut(s) | 84, 896 |
| TfiI | GAWTC | 6 cut(s) | 103, 212, 950, 1068, 1571, 1763 |
| Tru1I | TTAA | 3 cut(s) | 1452, 1644, 1896 |
| Tru9I | TTAA | 3 cut(s) | 1452, 1644, 1896 |
| TscAI | CASTG | 7 cut(s) | 397, 709, 850, 1447, 1478, 1639, 1670 |
| TseI | GCWGC | 3 cut(s) | 890, 1514, 1811 |
| TspRI | CASTG | 7 cut(s) | 397, 709, 850, 1447, 1478, 1639, 1670 |
| VpaK11BI | GGWCC | 2 cut(s) | 89, 1308 |
| XapI | RAATTY | 6 cut(s) | 265, 1081, 1178, 1201, 1318, 1333 |
| XceI | RCATGY | 3 cut(s) | 1467, 1659, 1987 |
| XhoI | CTCGAG | 1 cut(s) | 1014 |
| XmnI | GAANNNNTTC | 1 cut(s) | 984 |
| XspI | CTAG | 2 cut(s) | 47, 194 |
| ZrmI | AGTACT | 1 cut(s) | 1759 |