Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023137.1

Orthogroup ID

OG0012338

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1407

Gene Structure 1407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023137.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

atggttttatcaaaccgaaagctgaagcaacagctcagggagaagatagccgattctttactgacattcgaaatcgttaagtccgacccgagcaatgacgggtctgcaaaccctgacccgaatccgcagcagccccaatcgctgagagcgcttctgggtaagcccagcttgtcgaagcgagcgaaaaggagaaagatcgccgctttgagaggtccggcggcgagtggcagcggcggtaattttgaggaaaacgagggggaggaaattaggtcagaggaattgggggttgagaaggaaaagagtggagctttgggttcggagggaaatggggatttgaagaaggaaagtgggtcggagagtttggggaagaagaagaagaagaagaaggaaaagagtggagatttgggtgcagagggaatcggggatttggaggaagagaaaagtgagattgggtcagagagttcggggaagaagaagaggaagagagatgaggaagaaaagagtggagatttgagttcagaggaaaatgggggtgtgaaggaggctaagaaaccaaagaagaagaagcccaagtggaagaagaagaaggaggcaaagagtgaggaagagaagggttttgaggttgtgagggaagagcaaagtgtcaatgagaccactatggaaactgaaaggcaagcaagtggggaagttgcaacaaaagtttacgttggagggattccttattactcgacggaggatgatattcgaagttactttgaaagctgtggctccattactgagattgattgtatgaagtttcctgacagtgggaagttcaaaggaattgccattattagctttagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03015 ko05130 map03015 map05130

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

281

Amino Acids

30.84

Weight (kDa)

8.71

Isoelectric Point (pI)

54.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55340
fragaria_vesca	FvH4_7g21531
malus_domestica	MD01G1122100.v1.1 MD07G1191600.v1.1
prunus_persica	Prupe.2G229600_v2.0.a1 Prupe.2G229700_v2.0.a1
pyrus_communis	pycom01g14890 pycom07g18100
rosa_chinensis	RchiOBHm_Chr1g0365851
rosa_laevigata	RLG00000027386
rosa_multiflora	Rmu_sc0023137.1_g000001 Rmu_sc0041703.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290800
rosa_rugosa	Rorug01G0325000
rosa_samantha	Rh1AG334000 Rh1BG294600 Rh1CG311300 Rh1DG327000
rosa_wichuraiana	Rw1G029630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	125, 201, 218, 231, 234
AcuI	CTGAAG	1 cut(s)	44
AfeI	AGCGCT	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	806
AgsI	TTSAA	3 cut(s)	337, 758, 817
AluBI	AGCT	6 cut(s)	22, 34, 168, 308, 762, 837
AluI	AGCT	6 cut(s)	22, 34, 168, 308, 762, 837
Alw26I	GTCTC	1 cut(s)	644
Ama87I	CYCGRG	1 cut(s)	88
Aor51HI	AGCGCT	1 cut(s)	150
ApeKI	GCWGC	3 cut(s)	127, 130, 228
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	212
AsuII	TTCGAA	2 cut(s)	69, 745
AvaI	CYCGRG	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	212
BbvI	GCAGC	3 cut(s)	139, 142, 240
BcoDI	GTCTC	1 cut(s)	644
BfoI	RGCGCY	1 cut(s)	152
BisI	GCNGC	6 cut(s)	128, 131, 201, 219, 229, 232
BlsI	GCNGC	6 cut(s)	129, 132, 202, 220, 230, 233
Bme18I	GGWCC	1 cut(s)	212
BmeT110I	CYCGRG	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	769
Bpu10I	CCTNAGC	1 cut(s)	35
Bpu14I	TTCGAA	2 cut(s)	69, 745
BsaI	GGTCTC	1 cut(s)	644
Bsc4I	CCNNNNNNNGG	1 cut(s)	806
Bse3DI	GCAATG	1 cut(s)	100
BseGI	GGATG	1 cut(s)	742
BseLI	CCNNNNNNNGG	1 cut(s)	806
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	3 cut(s)	49, 134, 768
BseXI	GCAGC	3 cut(s)	139, 142, 240
BseYI	CCCAGC	1 cut(s)	164
BsgI	GTGCAG	1 cut(s)	429
BsiHKCI	CYCGRG	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	806
BsmAI	GTCTC	1 cut(s)	644
Bso31I	GGTCTC	1 cut(s)	644
BsoBI	CYCGRG	1 cut(s)	88
Bsp119I	TTCGAA	2 cut(s)	69, 745
Bsp143I	GATC	1 cut(s)	195
BspACI	CCGC	5 cut(s)	125, 201, 218, 231, 234
BspCNI	CTCAG	3 cut(s)	48, 135, 769
BspLI	GGNNCC	1 cut(s)	769
BspQI	GCTCTTC	1 cut(s)	627
BspT104I	TTCGAA	2 cut(s)	69, 745
BspTNI	GGTCTC	1 cut(s)	644
BsrDI	GCAATG	1 cut(s)	100
BssMI	GATC	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	806
Bst6I	CTCTTC	5 cut(s)	429, 470, 476, 600, 627
BstBI	TTCGAA	2 cut(s)	69, 745
BstC8I	GCNNGC	2 cut(s)	180, 675
BstDEI	CTNAG	4 cut(s)	35, 143, 546, 777
BstF5I	GGATG	1 cut(s)	742
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	1 cut(s)	198
BstMAI	GTCTC	1 cut(s)	644
BstMBI	GATC	1 cut(s)	195
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 148
BstV1I	GCAGC	3 cut(s)	139, 142, 240
BtsCI	GGATG	1 cut(s)	742
BtsIMutI	CAGTG	1 cut(s)	811
Cac8I	GCNNGC	2 cut(s)	180, 675
CfoI	GCGC	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	212
DdeI	CTNAG	4 cut(s)	35, 143, 546, 777
DpnI	GATC	1 cut(s)	197
DpnII	GATC	1 cut(s)	195
Eam1104I	CTCTTC	5 cut(s)	429, 470, 476, 600, 627
EarI	CTCTTC	5 cut(s)	429, 470, 476, 600, 627
Eco31I	GGTCTC	1 cut(s)	644
Eco47I	GGWCC	1 cut(s)	212
Eco47III	AGCGCT	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	44
Eco88I	CYCGRG	1 cut(s)	88
FaiI	YATR	2 cut(s)	659, 791
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
Fnu4HI	GCNGC	6 cut(s)	128, 131, 201, 219, 229, 232
FokI	GGATG	1 cut(s)	749
Fsp4HI	GCNGC	6 cut(s)	128, 131, 201, 219, 229, 232
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	6 cut(s)	128, 131, 201, 219, 229, 232
GsaI	CCCAGC	1 cut(s)	168
HaeII	RGCGCY	1 cut(s)	152
HapII	CCGG	1 cut(s)	215
HhaI	GCGC	1 cut(s)	151
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	4 cut(s)	53, 121, 417, 715
HpaII	CCGG	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	703
Hpy188I	TCNGA	6 cut(s)	85, 274, 319, 355, 457, 520
Hpy188III	TCNNGA	1 cut(s)	800
Hpy8I	GTNNAC	1 cut(s)	703
Hpy99I	CGWCG	1 cut(s)	733
HpyAV	CCTTC	6 cut(s)	286, 334, 379, 532, 580, 604
HpyCH4III	ACNGT	1 cut(s)	806
HpyCH4IV	ACGT	1 cut(s)	705
HpyCH4V	TGCA	3 cut(s)	107, 410, 692
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 148
HpyF3I	CTNAG	4 cut(s)	35, 143, 546, 777
HpySE526I	ACGT	1 cut(s)	705
HspAI	GCGC	1 cut(s)	149
Kzo9I	GATC	1 cut(s)	195
LguI	GCTCTTC	1 cut(s)	627
LmnI	GCTCC	2 cut(s)	305, 773
LpnPI	CCDG	6 cut(s)	22, 126, 140, 178, 228, 813
Lsp1109I	GCAGC	3 cut(s)	139, 142, 240
MaeII	ACGT	1 cut(s)	705
MaeIII	GTNAC	1 cut(s)	749
MalI	GATC	1 cut(s)	197
MboI	GATC	1 cut(s)	195
MluCI	AATT	4 cut(s)	238, 264, 278, 822
MmeI	TCCRAC	3 cut(s)	108, 333, 688
MseI	TTAA	1 cut(s)	78
MspA1I	CMGCKG	1 cut(s)	231
MspI	CCGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	2 cut(s)	139, 148
NdeII	GATC	1 cut(s)	195
NlaIV	GGNNCC	1 cut(s)	769
NspV	TTCGAA	2 cut(s)	69, 745
PciSI	GCTCTTC	1 cut(s)	627
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 179
PfeI	GAWTC	4 cut(s)	53, 121, 417, 715
PkrI	GCNGC	6 cut(s)	129, 132, 202, 220, 230, 233
PspFI	CCCAGC	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	769
PspPI	GGNCC	1 cut(s)	212
SapI	GCTCTTC	1 cut(s)	627
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	6 cut(s)	128, 131, 201, 219, 229, 232
Sau3AI	GATC	1 cut(s)	195
Sau96I	GGNCC	1 cut(s)	212
SfuI	TTCGAA	2 cut(s)	69, 745
SinI	GGWCC	1 cut(s)	212
Sse9I	AATT	4 cut(s)	238, 264, 278, 822
SsiI	CCGC	5 cut(s)	125, 201, 218, 231, 234
TaaI	ACNGT	1 cut(s)	806
TaiI	ACGT	1 cut(s)	708
TaqI	TCGA	4 cut(s)	69, 173, 728, 745
TasI	AATT	4 cut(s)	238, 264, 278, 822
TauI	GCSGC	3 cut(s)	203, 221, 234
TfiI	GAWTC	4 cut(s)	53, 121, 417, 715
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	1 cut(s)	811
TseI	GCWGC	3 cut(s)	127, 130, 228
TspDTI	ATGAA	1 cut(s)	806
TspGWI	ACGGA	1 cut(s)	746
TspRI	CASTG	1 cut(s)	811
VpaK11BI	GGWCC	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.