Rh1AG334000

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0012338
Physical Location & Seq
Forward (+)
56851286 .. 56854769
3484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG334000.1

Sequence Viewer

Length: 2100 bp
ATGGTTTTATCAAACCGAAAGCTGAAGCAACAGCTCAGGGAGAAGATAGCCGATTCTTTATTGACATTCGAAATCGTTAAGTCCGACCCGAGCAATGACGGGTCTGCAAACCCTGACCCGAATCCGCAGCAGCCCCAATCGCTGAGAGCGCTTCTGGGTTCGGCGACCCCGAAGCCCAGCTTGTCGAAGCGAGCGAAAAGGAGAAAGATCGCCGCTTTGAGAGGTCCGGCGGCGAGTGGCAGCGGCGGTAATTTTGAGGAAAACGAGGGGGAGGAAATTAGGTCAGAGGAATTGGGGGTTGAGAAGGAAAAGAGTGGAGCTTTGGGTTCGGAGGGAAATGGGGATTTGAAGAAGGAAAGTGGGTCGGAGAGTTTGGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGGAAAAGAGTGGAGATTTGGGTGCAGAGGGAAACGGGGATTTGGAGGAAGAGAAAAGTGAGATTGGGTCAGAGAGTTCGGGGAAGAAGAAGAGGAAGAGAGATGAGGAAGAAAAGAGTGGAGATTTGAGTTCAGAGGAAAATGGGGGTGTGAAGGAGGCTAAGAAACCAAAGAAGAAGAAGCCTAAGTGGAAGAAGAAGAAGGAGGCAAAGAGTGAGGAAGAGAAGGGTTTTGAGGTTGTGAGGGAAGACAAGAAGGGTTTTGAGGTTGTGAGGGAAGAGCAAAGTGTCAATGAGACTACTATGGAAACTGAAAGGCAAGCAAATGGGGAAGTTGCAACAAAAGTTTATGTTGGAGGGATTCCTTATTACTCGACGGAGGATGATATTCGAAGTTACTTTGAAAGCTGTGGCTCCATTACTGAGATTGATTGTATGAAGTTTCCTGACAGTGGGAAGTTCAAAGGAATTGCCATTATTAGCTTTAGGACGGAAGCTGCAGCTAAACGAGCATTGGCTCTTGATGGAGCTGACATGGGTGGACTGTTTCTGAAAATCCAGCCTTACAAAACAACTCGGGTCAATAAAGTAGTCAATAAAGTATCTGATTTTGCCCCAAAAATTGTGGAGGGCTACAATAGAATCTACGTTGGAAATTTGTCTTGGGATATCACTGAGGACGAACTGAGGAAACTTTTCTCAGATTGCAAGATATCGTCTATCAATTTTGGCATGGATAAGGAAACAGGAGAATTCCGAGGCTATGCCCATGTGGAATTTTCCGACAGTCTCTCACTGACAATGGCATTGAAGTTGGATCAGAAGATTGTTCTAGGGAGACCTGTCAAGATAAGCTGTGCAGTTCCTCTAAGAAAACCAGGGATCCATCCCAAGTCTGTATCCACAACTACAGGTACCCTTTCGGAGGCTGTAGCTACTACTGCAAGTGCAGGAGCTGATAATACCGGGTTGAGTGCCATCAGTGGTAAGCTTAAGAGAAGGACCTGCTATGAGTGTGGTGAAAAGGGCCATGTTTCTTCACTTTGTCCAATGAAGCAACCTGTGAATGTAATAGATACTAATGCATCCTATACGAAGCCTGTAACGAGTACAAGTATGATTTTGGAGTCTGTAACAACAAGTACAGAAGCTGCTAATACTGATTTGAGCTCTGTCAGTGGTAAGATTAAGAGAAGGACATGCTATGAGTGTGGTGAAAAGGGCCATGTTTCTACAGCTTGTCCAAAGAAGCAATCTGCTGGTGCAATAATAGATACCAATGCCACCCCTACGACGCCTGTACATACAATTACAAGTCCTGTATGGGAGTCCGTAGCTATAACTCCAAGTACAGGAGTTGATAATACTGGGTTGAGTTCCATCAGCGGTAAGATTAAGAGAAGAACATGTTACGAATGTGGGGAAAAAGGTCATGTTTCTACAGCTTGTCCAAACAAACAATATGCTCAGCCAATAGAAACCACTGCAAGTCATATGAAGCCTGTACCTACAACGCCAACACCCCTTCTGGAGTCTGCAGCTACAACTACAAGTACAGAACCCGATAATGCTGGGTTGAGCTCCATTAGCGGTAAGATTAAGAGAAGGACGTGCTATGAGTGTGGTGAAAAGGGCCATATATCTTCAGCTTGTCCAAAGAAACAATCTGTCGATAACAATGCAAGCTGA

Protein Analysis

699

Amino Acids

75.52

Weight (kDa)

9.07

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 253 - 320 4.6e-13 RNA recognition motif
RRM_1 PF00076 352 - 419 1.5e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G55340
fragaria_vesca FvH4_7g21531
malus_domestica MD01G1122100.v1.1 MD07G1191600.v1.1
prunus_persica Prupe.2G229600_v2.0.a1 Prupe.2G229700_v2.0.a1
pyrus_communis pycom01g14890 pycom07g18100
rosa_chinensis RchiOBHm_Chr1g0365851
rosa_laevigata RLG00000027386
rosa_multiflora Rmu_sc0023137.1_g000001 Rmu_sc0041703.1_g000001
rosa_roxburghii Rroxscaffold_4G00290800
rosa_rugosa Rorug01G0325000
rosa_samantha Rh1AG334000 Rh1BG294600 Rh1CG311300 Rh1DG327000
rosa_wichuraiana Rw1G029630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1424
Acc65I GGTACC 1 cut(s) 1325
AccB1I GGYRCC 1 cut(s) 1325
AciI CCGC 7 cut(s) 125, 213, 230, 243, 246, 1797, 2001
AclWI GGATC 3 cut(s) 1236, 1288, 1301
AcsI RAATTY 3 cut(s) 1066, 1163, 1187
AcuI CTGAAG 2 cut(s) 44, 2040
AcyI GRCGYC 1 cut(s) 1706
AfaI GTAC 7 cut(s) 1327, 1522, 1555, 1713, 1762, 1917, 1966
AfeI AGCGCT 1 cut(s) 150
AfiI CCNNNNNNNGG 3 cut(s) 863, 1336, 1763
AflII CTTAAG 1 cut(s) 1403
AflIII ACRYGT 1 cut(s) 1817
AgsI TTSAA 4 cut(s) 349, 815, 874, 1222
AjiI CACGTC 1 cut(s) 2022
AjnI CCWGG 1 cut(s) 1288
AjuI GAANNNNNNNTTGG 2 cut(s) 1057, 1089
Alw21I GWGCWC 2 cut(s) 1583, 1994
Alw26I GTCTC 3 cut(s) 701, 1205, 1243
AlwI GGATC 3 cut(s) 1236, 1288, 1301
AlwNI CAGNNNCTG 2 cut(s) 1367, 1562
Ama87I CYCGRG 2 cut(s) 88, 987
Aor51HI AGCGCT 1 cut(s) 150
AoxI GGCC 3 cut(s) 1438, 1633, 2044
ApeKI GCWGC 7 cut(s) 127, 130, 240, 908, 911, 1562, 1949
ApoI RAATTY 3 cut(s) 1066, 1163, 1187
Asp700I GAANNNNTTC 1 cut(s) 1106
Asp718I GGTACC 1 cut(s) 1325
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 5 cut(s) 224, 1413, 1438, 1633, 2044
AsuC2I CCSGG 1 cut(s) 1378
AsuHPI GGTGA 3 cut(s) 1442, 1637, 2048
AsuII TTCGAA 2 cut(s) 69, 802
AvaI CYCGRG 2 cut(s) 88, 987
AvaII GGWCC 2 cut(s) 224, 1413
BamHI GGATCC 1 cut(s) 1293
BanI GGYRCC 1 cut(s) 1325
BanII GRGCYC 2 cut(s) 1583, 1994
BbsI GAAGAC 1 cut(s) 666
Bbv12I GWGCWC 2 cut(s) 1583, 1994
BbvI GCAGC 7 cut(s) 139, 142, 252, 895, 923, 1549, 1961
BccI CCATC 4 cut(s) 929, 1305, 1397, 1799
BcgI CGANNNNNNTGC 1 cut(s) 2072
BciT130I CCWGG 1 cut(s) 1290
BciVI GTATCC 1 cut(s) 1321
BcnI CCSGG 1 cut(s) 1378
BcoDI GTCTC 3 cut(s) 701, 1205, 1243
BfaI CTAG 1 cut(s) 1244
BfmI CTRYAG 6 cut(s) 909, 1320, 1341, 1644, 1851, 1947
BfoI RGCGCY 1 cut(s) 152
BfrI CTTAAG 1 cut(s) 1403
BfuAI ACCTGC 1 cut(s) 1424
BfuI GTATCC 1 cut(s) 1321
BlpI GCTNAGC 1 cut(s) 1878
Bme1390I CCNGG 2 cut(s) 1290, 1378
Bme18I GGWCC 2 cut(s) 224, 1413
BmeT110I CYCGRG 2 cut(s) 88, 987
BmgBI CACGTC 1 cut(s) 2022
BmgT120I GGNCC 5 cut(s) 224, 1413, 1438, 1633, 2044
BmiI GGNNCC 3 cut(s) 826, 1295, 1327
BmrFI CCNGG 2 cut(s) 1290, 1378
BmrI ACTGGG 1 cut(s) 1788
BmsI GCATC 1 cut(s) 1505
BmuI ACTGGG 1 cut(s) 1788
BpiI GAAGAC 1 cut(s) 666
BpmI CTGGAG 1 cut(s) 1961
Bpu10I CCTNAGC 1 cut(s) 35
Bpu1102I GCTNAGC 1 cut(s) 1878
Bpu14I TTCGAA 2 cut(s) 69, 802
BpuMI CCSGG 1 cut(s) 1378
BsaHI GRCGYC 1 cut(s) 1706
BsaI GGTCTC 1 cut(s) 1243
BsaJI CCNNGG 2 cut(s) 1168, 1289
Bsc4I CCNNNNNNNGG 3 cut(s) 863, 1336, 1763
Bse1I ACTGG 1 cut(s) 1783
Bse3DI GCAATG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 1290
BseDI CCNNGG 2 cut(s) 1168, 1289
BseGI GGATG 3 cut(s) 799, 1297, 1496
BseLI CCNNNNNNNGG 3 cut(s) 863, 1336, 1763
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 7 cut(s) 49, 134, 825, 1077, 1088, 1125, 1892
BseNI ACTGG 1 cut(s) 1783
BseXI GCAGC 7 cut(s) 139, 142, 252, 895, 923, 1549, 1961
BseYI CCCAGC 2 cut(s) 176, 1982
BsgI GTGCAG 3 cut(s) 456, 1290, 1380
BshFI GGCC 3 cut(s) 1440, 1635, 2046
BshNI GGYRCC 1 cut(s) 1325
BsiHKAI GWGCWC 2 cut(s) 1583, 1994
BsiHKCI CYCGRG 2 cut(s) 88, 987
BsiSI CCGG 2 cut(s) 227, 1377
BslI CCNNNNNNNGG 3 cut(s) 863, 1336, 1763
BsmAI GTCTC 3 cut(s) 701, 1205, 1243
BsnI GGCC 3 cut(s) 1440, 1635, 2046
Bso31I GGTCTC 1 cut(s) 1243
BsoBI CYCGRG 2 cut(s) 88, 987
Bsp119I TTCGAA 2 cut(s) 69, 802
Bsp1286I GDGCHC 2 cut(s) 1583, 1994
Bsp1407I TGTACA 1 cut(s) 1711
Bsp143I GATC 3 cut(s) 207, 1228, 1293
Bsp1720I GCTNAGC 1 cut(s) 1878
BspACI CCGC 7 cut(s) 125, 213, 230, 243, 246, 1797, 2001
BspANI GGCC 3 cut(s) 1440, 1635, 2046
BspCNI CTCAG 7 cut(s) 48, 135, 826, 1078, 1089, 1124, 1891
BspLI GGNNCC 3 cut(s) 826, 1295, 1327
BspMAI CTGCAG 2 cut(s) 913, 1951
BspMI ACCTGC 1 cut(s) 1424
BspPI GGATC 3 cut(s) 1236, 1288, 1301
BspQI GCTCTTC 1 cut(s) 684
BspT104I TTCGAA 2 cut(s) 69, 802
BspT107I GGYRCC 1 cut(s) 1325
BspTI CTTAAG 1 cut(s) 1403
BspTNI GGTCTC 1 cut(s) 1243
BsrDI GCAATG 1 cut(s) 100
BsrGI TGTACA 1 cut(s) 1711
BsrI ACTGG 1 cut(s) 1783
BssECI CCNNGG 2 cut(s) 1168, 1289
BssMI GATC 3 cut(s) 207, 1228, 1293
BssNI GRCGYC 1 cut(s) 1706
Bst2UI CCWGG 1 cut(s) 1290
Bst4CI ACNGT 3 cut(s) 863, 957, 1199
Bst6I CTCTTC 6 cut(s) 404, 456, 497, 503, 627, 684
BstACI GRCGYC 1 cut(s) 1706
BstAFI CTTAAG 1 cut(s) 1403
BstAUI TGTACA 1 cut(s) 1711
BstBI TTCGAA 2 cut(s) 69, 802
BstC8I GCNNGC 3 cut(s) 192, 732, 2095
BstENI CCTNNNNNAGG 1 cut(s) 1334
BstF5I GGATG 3 cut(s) 799, 1297, 1496
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 3 cut(s) 210, 1231, 1296
BstMAI GTCTC 3 cut(s) 701, 1205, 1243
BstMBI GATC 3 cut(s) 207, 1228, 1293
BstMWI GCNNNNNNNGC 5 cut(s) 139, 148, 920, 1352, 1998
BstNI CCWGG 1 cut(s) 1290
BstNSI RCATGY 2 cut(s) 1614, 1821
BstSCI CCNGG 2 cut(s) 1288, 1376
BstSFI CTRYAG 6 cut(s) 909, 1320, 1341, 1644, 1851, 1947
BstV1I GCAGC 7 cut(s) 139, 142, 252, 895, 923, 1549, 1961
BstV2I GAAGAC 1 cut(s) 666
BstX2I RGATCY 1 cut(s) 1293
BstYI RGATCY 1 cut(s) 1293
BsuI GTATCC 1 cut(s) 1321
BsuRI GGCC 3 cut(s) 1440, 1635, 2046
BtrI CACGTC 1 cut(s) 2022
BtsCI GGATG 3 cut(s) 799, 1297, 1496
BtsI GCAGTG 1 cut(s) 1893
BtsIMutI CAGTG 6 cut(s) 868, 1083, 1205, 1399, 1594, 1893
BveI ACCTGC 1 cut(s) 1424
Cac8I GCNNGC 3 cut(s) 192, 732, 2095
CaiI CAGNNNCTG 2 cut(s) 1367, 1562
CfoI GCGC 1 cut(s) 151
Cfr13I GGNCC 5 cut(s) 224, 1413, 1438, 1633, 2044
CseI GACGC 1 cut(s) 1714
Csp6I GTAC 7 cut(s) 1326, 1521, 1554, 1712, 1761, 1916, 1965
CspCI CAANNNNNGTGG 2 cut(s) 1017, 1052
CviAII CATG 8 cut(s) 946, 1144, 1181, 1442, 1611, 1637, 1818, 1844
CviQI GTAC 7 cut(s) 1326, 1521, 1554, 1712, 1761, 1916, 1965
DpnI GATC 3 cut(s) 209, 1230, 1295
DpnII GATC 3 cut(s) 207, 1228, 1293
Eam1104I CTCTTC 6 cut(s) 404, 456, 497, 503, 627, 684
EarI CTCTTC 6 cut(s) 404, 456, 497, 503, 627, 684
Ecl136II GAGCTC 2 cut(s) 1581, 1992
Eco24I GRGCYC 2 cut(s) 1583, 1994
Eco31I GGTCTC 1 cut(s) 1243
Eco32I GATATC 2 cut(s) 1081, 1125
Eco47I GGWCC 2 cut(s) 224, 1413
Eco47III AGCGCT 1 cut(s) 150
Eco53kI GAGCTC 2 cut(s) 1581, 1992
Eco57I CTGAAG 2 cut(s) 44, 2040
Eco88I CYCGRG 2 cut(s) 88, 987
EcoICRI GAGCTC 2 cut(s) 1581, 1992
EcoNI CCTNNNNNAGG 1 cut(s) 1334
EcoO109I RGGNCCY 1 cut(s) 1413
EcoRI GAATTC 1 cut(s) 1163
EcoRII CCWGG 1 cut(s) 1288
EcoRV GATATC 2 cut(s) 1081, 1125
EcoT22I ATGCAT 1 cut(s) 1498
EcoT38I GRGCYC 2 cut(s) 1583, 1994
FaeI CATG 8 cut(s) 949, 1147, 1184, 1445, 1614, 1640, 1821, 1847
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FatI CATG 8 cut(s) 945, 1143, 1180, 1441, 1610, 1636, 1817, 1843
FauNDI CATATG 1 cut(s) 1905
FokI GGATG 3 cut(s) 806, 1284, 1483
FriOI GRGCYC 2 cut(s) 1583, 1994
FspBI CTAG 1 cut(s) 1244
GlaI GCGC 1 cut(s) 150
GsaI CCCAGC 2 cut(s) 180, 1986
GsuI CTGGAG 1 cut(s) 1961
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 3 cut(s) 1440, 1635, 2046
HapII CCGG 2 cut(s) 227, 1377
HgaI GACGC 1 cut(s) 1714
HhaI GCGC 1 cut(s) 151
Hin1I GRCGYC 1 cut(s) 1706
Hin1II CATG 8 cut(s) 949, 1147, 1184, 1445, 1614, 1640, 1821, 1847
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HindIII AAGCTT 1 cut(s) 1400
HinfI GANTC 7 cut(s) 53, 121, 772, 1053, 1538, 1739, 1943
HpaII CCGG 2 cut(s) 227, 1377
HphI GGTGA 3 cut(s) 1442, 1637, 2048
Hpy166II GTNNAC 1 cut(s) 953
Hpy188III TCNNGA 4 cut(s) 857, 932, 1258, 1940
Hpy8I GTNNAC 1 cut(s) 953
Hpy99I CGWCG 2 cut(s) 790, 1708
HpyCH4III ACNGT 3 cut(s) 863, 957, 1199
HpyCH4IV ACGT 2 cut(s) 1059, 2021
HpyF10VI GCNNNNNNNGC 5 cut(s) 139, 148, 920, 1352, 1998
HpySE526I ACGT 2 cut(s) 1059, 2021
Hsp92I GRCGYC 1 cut(s) 1706
Hsp92II CATG 8 cut(s) 949, 1147, 1184, 1445, 1614, 1640, 1821, 1847
HspAI GCGC 1 cut(s) 149
KpnI GGTACC 1 cut(s) 1329
Kzo9I GATC 3 cut(s) 207, 1228, 1293
LguI GCTCTTC 1 cut(s) 684
LmnI GCTCC 5 cut(s) 317, 830, 938, 1364, 1997
Lsp1109I GCAGC 7 cut(s) 139, 142, 252, 895, 923, 1549, 1961
LweI GCATC 1 cut(s) 1505
MaeI CTAG 1 cut(s) 1244
MaeII ACGT 2 cut(s) 1059, 2021
MaeIII GTNAC 4 cut(s) 806, 1513, 1543, 1820
MalI GATC 3 cut(s) 209, 1230, 1295
MboI GATC 3 cut(s) 207, 1228, 1293
MflI RGATCY 1 cut(s) 1293
MhlI GDGCHC 2 cut(s) 1583, 1994
MlyI GAGTC 3 cut(s) 1547, 1748, 1952
MmeI TCCRAC 6 cut(s) 108, 345, 745, 1042, 1206, 1218
Mph1103I ATGCAT 1 cut(s) 1498
MroXI GAANNNNTTC 1 cut(s) 1106
MseI TTAA 5 cut(s) 78, 1404, 1599, 1806, 2010
MspA1I CMGCKG 2 cut(s) 243, 1797
MspCI CTTAAG 1 cut(s) 1403
MspI CCGG 2 cut(s) 227, 1377
MspR9I CCNGG 2 cut(s) 1290, 1378
MvaI CCWGG 1 cut(s) 1290
MwoI GCNNNNNNNGC 5 cut(s) 139, 148, 920, 1352, 1998
NciI CCSGG 1 cut(s) 1378
NdeI CATATG 1 cut(s) 1905
NdeII GATC 3 cut(s) 207, 1228, 1293
NlaIII CATG 8 cut(s) 949, 1147, 1184, 1445, 1614, 1640, 1821, 1847
NlaIV GGNNCC 3 cut(s) 826, 1295, 1327
NsiI ATGCAT 1 cut(s) 1498
NspI RCATGY 2 cut(s) 1614, 1821
NspV TTCGAA 2 cut(s) 69, 802
PciI ACATGT 1 cut(s) 1817
PciSI GCTCTTC 1 cut(s) 684
PcsI WCGNNNNNNNCGW 3 cut(s) 81, 167, 191
PdmI GAANNNNTTC 1 cut(s) 1106
PfeI GAWTC 4 cut(s) 53, 121, 772, 1053
PleI GAGTC 3 cut(s) 1546, 1747, 1951
PpsI GAGTC 3 cut(s) 1546, 1747, 1951
PpuMI RGGWCCY 1 cut(s) 1413
PscI ACATGT 1 cut(s) 1817
Psp124BI GAGCTC 2 cut(s) 1583, 1994
Psp5II RGGWCCY 1 cut(s) 1413
Psp6I CCWGG 1 cut(s) 1288
PspFI CCCAGC 2 cut(s) 176, 1982
PspGI CCWGG 1 cut(s) 1288
PspN4I GGNNCC 3 cut(s) 826, 1295, 1327
PspPI GGNCC 5 cut(s) 224, 1413, 1438, 1633, 2044
PspPPI RGGWCCY 1 cut(s) 1413
PstI CTGCAG 2 cut(s) 913, 1951
PstNI CAGNNNCTG 2 cut(s) 1367, 1562
PsuI RGATCY 1 cut(s) 1293
RsaI GTAC 7 cut(s) 1327, 1522, 1555, 1713, 1762, 1917, 1966
RsaNI GTAC 7 cut(s) 1326, 1521, 1554, 1712, 1761, 1916, 1965
SacI GAGCTC 2 cut(s) 1583, 1994
SapI GCTCTTC 1 cut(s) 684
SaqAI TTAA 5 cut(s) 78, 1404, 1599, 1806, 2010
Sau3AI GATC 3 cut(s) 207, 1228, 1293
Sau96I GGNCC 5 cut(s) 224, 1413, 1438, 1633, 2044
SchI GAGTC 3 cut(s) 1547, 1748, 1952
ScrFI CCNGG 2 cut(s) 1290, 1378
SduI GDGCHC 2 cut(s) 1583, 1994
SfaNI GCATC 1 cut(s) 1505
SfcI CTRYAG 6 cut(s) 909, 1320, 1341, 1644, 1851, 1947
SfuI TTCGAA 2 cut(s) 69, 802
SinI GGWCC 2 cut(s) 224, 1413
SmlI CTYRAG 1 cut(s) 1403
SmoI CTYRAG 1 cut(s) 1403
SsiI CCGC 7 cut(s) 125, 213, 230, 243, 246, 1797, 2001
SspMI CTAG 1 cut(s) 1244
SstI GAGCTC 2 cut(s) 1583, 1994
StyD4I CCNGG 2 cut(s) 1288, 1376
TaaI ACNGT 3 cut(s) 863, 957, 1199
TaiI ACGT 2 cut(s) 1062, 2024
TaqI TCGA 5 cut(s) 69, 185, 785, 802, 2082
TatI WGTACW 5 cut(s) 1520, 1553, 1711, 1760, 1964
TauI GCSGC 3 cut(s) 215, 233, 246
TfiI GAWTC 4 cut(s) 53, 121, 772, 1053
Tru1I TTAA 5 cut(s) 78, 1404, 1599, 1806, 2010
Tru9I TTAA 5 cut(s) 78, 1404, 1599, 1806, 2010
TscAI CASTG 6 cut(s) 868, 1090, 1212, 1399, 1594, 1900
TseI GCWGC 7 cut(s) 127, 130, 240, 908, 911, 1562, 1949
TspDTI ATGAA 3 cut(s) 863, 1478, 1922
TspGWI ACGGA 3 cut(s) 803, 917, 1732
TspRI CASTG 6 cut(s) 868, 1090, 1212, 1399, 1594, 1900
Vha464I CTTAAG 1 cut(s) 1403
VpaK11BI GGWCC 2 cut(s) 224, 1413
XagI CCTNNNNNAGG 1 cut(s) 1334
XapI RAATTY 3 cut(s) 1066, 1163, 1187
XceI RCATGY 2 cut(s) 1614, 1821
XmnI GAANNNNTTC 1 cut(s) 1106
XspI CTAG 1 cut(s) 1244
Zsp2I ATGCAT 1 cut(s) 1498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.