zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G55340 |
| fragaria_vesca | FvH4_7g21531 |
| malus_domestica | MD01G1122100.v1.1 MD07G1191600.v1.1 |
| prunus_persica | Prupe.2G229600_v2.0.a1 Prupe.2G229700_v2.0.a1 |
| pyrus_communis | pycom01g14890 pycom07g18100 |
| rosa_chinensis | RchiOBHm_Chr1g0365851 |
| rosa_laevigata | RLG00000027386 |
| rosa_multiflora | Rmu_sc0023137.1_g000001 Rmu_sc0041703.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00290800 |
| rosa_rugosa | Rorug01G0325000 |
| rosa_samantha | Rh1AG334000 Rh1BG294600 Rh1CG311300 Rh1DG327000 |
| rosa_wichuraiana | Rw1G029630 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1412 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 89 |
| AciI | CCGC | 9 cut(s) | 80, 113, 236, 335, 476, 978, 1539, 1860, 2118 |
| AclI | AACGTT | 1 cut(s) | 144 |
| AclWI | GGATC | 3 cut(s) | 59, 634, 1002 |
| AcsI | RAATTY | 5 cut(s) | 367, 1120, 1217, 1240, 1372 |
| AcuI | CTGAAG | 3 cut(s) | 921, 1172, 1283 |
| AcyI | GRCGYC | 1 cut(s) | 281 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 89, 115, 219, 1409 |
| AgeI | ACCGGT | 3 cut(s) | 1509, 1830, 2088 |
| Alw26I | GTCTC | 2 cut(s) | 272, 767 |
| AlwI | GGATC | 3 cut(s) | 59, 634, 1002 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 974, 1454, 1691, 1775, 2033 |
| Ama87I | CYCGRG | 1 cut(s) | 1053 |
| ApeKI | GCWGC | 4 cut(s) | 31, 296, 974, 1691 |
| ApoI | RAATTY | 5 cut(s) | 367, 1120, 1217, 1240, 1372 |
| AsiGI | ACCGGT | 3 cut(s) | 1509, 1830, 2088 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1023, 1160 |
| AspS9I | GGNCC | 5 cut(s) | 1347, 1671, 1704, 1737, 1992 |
| AsuHPI | GGTGA | 7 cut(s) | 254, 490, 752, 1028, 1529, 1850, 2108 |
| AvaI | CYCGRG | 1 cut(s) | 1053 |
| AvaII | GGWCC | 5 cut(s) | 1347, 1671, 1704, 1737, 1992 |
| BanI | GGYRCC | 1 cut(s) | 1412 |
| BbsI | GAAGAC | 1 cut(s) | 1309 |
| BbvI | GCAGC | 4 cut(s) | 18, 283, 961, 1678 |
| BccI | CCATC | 4 cut(s) | 198, 731, 995, 2063 |
| BceAI | ACGGC | 1 cut(s) | 1781 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 278, 312 |
| BciVI | GTATCC | 2 cut(s) | 8, 2159 |
| BcoDI | GTCTC | 2 cut(s) | 272, 767 |
| BfaI | CTAG | 1 cut(s) | 1943 |
| BfmI | CTRYAG | 2 cut(s) | 1440, 2019 |
| BfuI | GTATCC | 2 cut(s) | 8, 2159 |
| BisI | GCNGC | 6 cut(s) | 32, 236, 297, 975, 978, 1692 |
| BlsI | GCNGC | 6 cut(s) | 33, 237, 298, 976, 979, 1693 |
| BmcAI | AGTACT | 4 cut(s) | 1474, 1606, 1927, 2171 |
| Bme18I | GGWCC | 5 cut(s) | 1347, 1671, 1704, 1737, 1992 |
| BmeT110I | CYCGRG | 1 cut(s) | 1053 |
| BmgT120I | GGNCC | 5 cut(s) | 1347, 1671, 1704, 1737, 1992 |
| BmiI | GGNNCC | 6 cut(s) | 131, 316, 322, 1348, 1349, 1414 |
| BpiI | GAAGAC | 1 cut(s) | 1309 |
| BsaHI | GRCGYC | 1 cut(s) | 281 |
| BsaJI | CCNNGG | 3 cut(s) | 83, 990, 1222 |
| BsaWI | WCCGGW | 3 cut(s) | 1509, 1830, 2088 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 478, 508 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 89, 115, 219, 1409 |
| Bse118I | RCCGGY | 5 cut(s) | 22, 317, 1509, 1830, 2088 |
| Bse3DI | GCAATG | 1 cut(s) | 2142 |
| BseDI | CCNNGG | 3 cut(s) | 83, 990, 1222 |
| BseGI | GGATG | 7 cut(s) | 160, 331, 568, 742, 814, 1150, 2085 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 89, 115, 219, 1409 |
| BseMI | GCAATG | 1 cut(s) | 2142 |
| BseMII | CTCAG | 7 cut(s) | 164, 744, 846, 905, 1131, 1179, 1455 |
| BseRI | GAGGAG | 5 cut(s) | 590, 677, 770, 1510, 1831 |
| BseXI | GCAGC | 4 cut(s) | 18, 283, 961, 1678 |
| BsgI | GTGCAG | 1 cut(s) | 282 |
| BshNI | GGYRCC | 1 cut(s) | 1412 |
| BshTI | ACCGGT | 3 cut(s) | 1509, 1830, 2088 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1053 |
| BsiSI | CCGG | 5 cut(s) | 23, 318, 1510, 1831, 2089 |
| BslFI | GGGAC | 6 cut(s) | 18, 763, 1360, 1539, 1860, 2118 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 89, 115, 219, 1409 |
| BsmAI | GTCTC | 2 cut(s) | 272, 767 |
| BsmBI | CGTCTC | 1 cut(s) | 272 |
| BsmFI | GGGAC | 6 cut(s) | 18, 763, 1360, 1539, 1860, 2118 |
| BsmI | GAATGC | 1 cut(s) | 837 |
| BsoBI | CYCGRG | 1 cut(s) | 1053 |
| Bsp143I | GATC | 6 cut(s) | 64, 289, 626, 994, 1147, 1282 |
| Bsp19I | CCATGG | 1 cut(s) | 83 |
| BspACI | CCGC | 9 cut(s) | 80, 113, 236, 335, 476, 978, 1539, 1860, 2118 |
| BspCNI | CTCAG | 7 cut(s) | 163, 745, 847, 906, 1132, 1178, 1456 |
| BspLI | GGNNCC | 6 cut(s) | 131, 316, 322, 1348, 1349, 1414 |
| BspPI | GGATC | 3 cut(s) | 59, 634, 1002 |
| BspT107I | GGYRCC | 1 cut(s) | 1412 |
| BsrDI | GCAATG | 1 cut(s) | 2142 |
| BsrFI | RCCGGY | 5 cut(s) | 22, 317, 1509, 1830, 2088 |
| BssAI | RCCGGY | 5 cut(s) | 22, 317, 1509, 1830, 2088 |
| BssECI | CCNNGG | 3 cut(s) | 83, 990, 1222 |
| BssMI | GATC | 6 cut(s) | 64, 289, 626, 994, 1147, 1282 |
| BssNI | GRCGYC | 1 cut(s) | 281 |
| BssT1I | CCWWGG | 2 cut(s) | 83, 990 |
| Bst4CI | ACNGT | 3 cut(s) | 104, 266, 1477 |
| Bst6I | CTCTTC | 6 cut(s) | 175, 584, 590, 596, 695, 720 |
| BstACI | GRCGYC | 1 cut(s) | 281 |
| BstC8I | GCNNGC | 1 cut(s) | 1269 |
| BstDEI | CTNAG | 8 cut(s) | 150, 669, 753, 855, 914, 1140, 1165, 1464 |
| BstDSI | CCRYGG | 1 cut(s) | 83 |
| BstEII | GGTNACC | 1 cut(s) | 104 |
| BstF5I | GGATG | 7 cut(s) | 160, 331, 568, 742, 814, 1150, 2085 |
| BstKTI | GATC | 6 cut(s) | 67, 292, 629, 997, 1150, 1285 |
| BstMAI | GTCTC | 2 cut(s) | 272, 767 |
| BstMBI | GATC | 6 cut(s) | 64, 289, 626, 994, 1147, 1282 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 382, 391, 986, 1055 |
| BstNSI | RCATGY | 3 cut(s) | 97, 1506, 1827 |
| BstPI | GGTNACC | 1 cut(s) | 104 |
| BstSFI | CTRYAG | 2 cut(s) | 1440, 2019 |
| BstV1I | GCAGC | 4 cut(s) | 18, 283, 961, 1678 |
| BstV2I | GAAGAC | 1 cut(s) | 1309 |
| BstX2I | RGATCY | 2 cut(s) | 626, 994 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 84 |
| BstYI | RGATCY | 2 cut(s) | 626, 994 |
| BsuI | GTATCC | 2 cut(s) | 8, 2159 |
| BtgI | CCRYGG | 1 cut(s) | 83 |
| BtsCI | GGATG | 7 cut(s) | 160, 331, 568, 742, 814, 1150, 2085 |
| BtsI | GCAGTG | 2 cut(s) | 499, 793 |
| BtsIMutI | CAGTG | 5 cut(s) | 499, 793, 1486, 1807, 2065 |
| Cac8I | GCNNGC | 1 cut(s) | 1269 |
| CaiI | CAGNNNCTG | 5 cut(s) | 974, 1454, 1691, 1775, 2033 |
| Cfr10I | RCCGGY | 5 cut(s) | 22, 317, 1509, 1830, 2088 |
| Cfr13I | GGNCC | 5 cut(s) | 1347, 1671, 1704, 1737, 1992 |
| CseI | GACGC | 2 cut(s) | 37, 289 |
| CspAI | ACCGGT | 3 cut(s) | 1509, 1830, 2088 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 274, 309 |
| CviAII | CATG | 5 cut(s) | 84, 94, 1128, 1503, 1824 |
| DdeI | CTNAG | 8 cut(s) | 150, 669, 753, 855, 914, 1140, 1165, 1464 |
| DpnI | GATC | 6 cut(s) | 66, 291, 628, 996, 1149, 1284 |
| DpnII | GATC | 6 cut(s) | 64, 289, 626, 994, 1147, 1282 |
| Eam1104I | CTCTTC | 6 cut(s) | 175, 584, 590, 596, 695, 720 |
| EarI | CTCTTC | 6 cut(s) | 175, 584, 590, 596, 695, 720 |
| Eco130I | CCWWGG | 2 cut(s) | 83, 990 |
| Eco47I | GGWCC | 5 cut(s) | 1347, 1671, 1704, 1737, 1992 |
| Eco57I | CTGAAG | 3 cut(s) | 921, 1172, 1283 |
| Eco88I | CYCGRG | 1 cut(s) | 1053 |
| Eco91I | GGTNACC | 1 cut(s) | 104 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1347 |
| EcoO65I | GGTNACC | 1 cut(s) | 104 |
| EcoRI | GAATTC | 1 cut(s) | 1217 |
| EcoT14I | CCWWGG | 2 cut(s) | 83, 990 |
| EcoT22I | ATGCAT | 1 cut(s) | 1191 |
| ErhI | CCWWGG | 2 cut(s) | 83, 990 |
| Esp3I | CGTCTC | 1 cut(s) | 272 |
| FaeI | CATG | 5 cut(s) | 87, 97, 1131, 1506, 1827 |
| FaqI | GGGAC | 6 cut(s) | 18, 763, 1360, 1539, 1860, 2118 |
| FatI | CATG | 5 cut(s) | 83, 93, 1127, 1502, 1823 |
| Fnu4HI | GCNGC | 6 cut(s) | 32, 236, 297, 975, 978, 1692 |
| FokI | GGATG | 7 cut(s) | 147, 318, 575, 749, 821, 1157, 2092 |
| Fsp4HI | GCNGC | 6 cut(s) | 32, 236, 297, 975, 978, 1692 |
| FspBI | CTAG | 1 cut(s) | 1943 |
| GluI | GCNGC | 6 cut(s) | 32, 236, 297, 975, 978, 1692 |
| HapII | CCGG | 5 cut(s) | 23, 318, 1510, 1831, 2089 |
| HgaI | GACGC | 2 cut(s) | 37, 289 |
| Hin1I | GRCGYC | 1 cut(s) | 281 |
| Hin1II | CATG | 5 cut(s) | 87, 97, 1131, 1506, 1827 |
| HinfI | GANTC | 5 cut(s) | 401, 467, 1107, 1466, 1931 |
| HpaII | CCGG | 5 cut(s) | 23, 318, 1510, 1831, 2089 |
| HphI | GGTGA | 7 cut(s) | 254, 490, 752, 1028, 1529, 1850, 2108 |
| Hpy166II | GTNNAC | 2 cut(s) | 121, 1019 |
| Hpy188III | TCNNGA | 6 cut(s) | 62, 350, 398, 923, 998, 1312 |
| Hpy8I | GTNNAC | 2 cut(s) | 121, 1019 |
| Hpy99I | CGWCG | 3 cut(s) | 31, 104, 283 |
| HpyAV | CCTTC | 7 cut(s) | 565, 607, 652, 727, 1282, 1362, 2070 |
| HpyCH4III | ACNGT | 3 cut(s) | 104, 266, 1477 |
| HpyCH4IV | ACGT | 3 cut(s) | 144, 309, 442 |
| HpyCH4V | TGCA | 7 cut(s) | 299, 329, 407, 1173, 1189, 1364, 1694 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 382, 391, 986, 1055 |
| HpyF3I | CTNAG | 8 cut(s) | 150, 669, 753, 855, 914, 1140, 1165, 1464 |
| HpySE526I | ACGT | 3 cut(s) | 144, 309, 442 |
| Hsp92I | GRCGYC | 1 cut(s) | 281 |
| Hsp92II | CATG | 5 cut(s) | 87, 97, 1131, 1506, 1827 |
| KflI | GGGWCCC | 1 cut(s) | 1347 |
| Kzo9I | GATC | 6 cut(s) | 64, 289, 626, 994, 1147, 1282 |
| LmnI | GCTCC | 6 cut(s) | 326, 757, 1004, 1237, 1451, 1772 |
| Lsp1109I | GCAGC | 4 cut(s) | 18, 283, 961, 1678 |
| MaeI | CTAG | 1 cut(s) | 1943 |
| MaeII | ACGT | 3 cut(s) | 144, 309, 442 |
| MaeIII | GTNAC | 5 cut(s) | 104, 176, 872, 1720, 1753 |
| MalI | GATC | 6 cut(s) | 66, 291, 628, 996, 1149, 1284 |
| MboI | GATC | 6 cut(s) | 64, 289, 626, 994, 1147, 1282 |
| MflI | RGATCY | 2 cut(s) | 626, 994 |
| MlyI | GAGTC | 2 cut(s) | 395, 1475 |
| MmeI | TCCRAC | 1 cut(s) | 1096 |
| Mph1103I | ATGCAT | 1 cut(s) | 1191 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1023, 1160 |
| MseI | TTAA | 3 cut(s) | 963, 1812, 2070 |
| MslI | CAYNNNNRTG | 1 cut(s) | 82 |
| MspA1I | CMGCKG | 1 cut(s) | 238 |
| MspI | CCGG | 5 cut(s) | 23, 318, 1510, 1831, 2089 |
| Mva1269I | GAATGC | 1 cut(s) | 837 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 382, 391, 986, 1055 |
| NcoI | CCATGG | 1 cut(s) | 83 |
| NdeII | GATC | 6 cut(s) | 64, 289, 626, 994, 1147, 1282 |
| NlaIII | CATG | 5 cut(s) | 87, 97, 1131, 1506, 1827 |
| NlaIV | GGNNCC | 6 cut(s) | 131, 316, 322, 1348, 1349, 1414 |
| NsiI | ATGCAT | 1 cut(s) | 1191 |
| NspI | RCATGY | 3 cut(s) | 97, 1506, 1827 |
| PaeR7I | CTCGAG | 1 cut(s) | 1053 |
| PctI | GAATGC | 1 cut(s) | 837 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1023, 1160 |
| PfeI | GAWTC | 3 cut(s) | 467, 1107, 1931 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 89 |
| PinAI | ACCGGT | 3 cut(s) | 1509, 1830, 2088 |
| PkrI | GCNGC | 6 cut(s) | 33, 237, 298, 976, 979, 1693 |
| PleI | GAGTC | 2 cut(s) | 395, 1474 |
| PpsI | GAGTC | 2 cut(s) | 395, 1474 |
| PpuMI | RGGWCCY | 1 cut(s) | 1347 |
| Psp1406I | AACGTT | 1 cut(s) | 144 |
| Psp5II | RGGWCCY | 1 cut(s) | 1347 |
| PspEI | GGTNACC | 1 cut(s) | 104 |
| PspN4I | GGNNCC | 6 cut(s) | 131, 316, 322, 1348, 1349, 1414 |
| PspPI | GGNCC | 5 cut(s) | 1347, 1671, 1704, 1737, 1992 |
| PspPPI | RGGWCCY | 1 cut(s) | 1347 |
| PspXI | VCTCGAGB | 1 cut(s) | 1053 |
| PstNI | CAGNNNCTG | 5 cut(s) | 974, 1454, 1691, 1775, 2033 |
| PsuI | RGATCY | 2 cut(s) | 626, 994 |
| RseI | CAYNNNNRTG | 1 cut(s) | 82 |
| SaqAI | TTAA | 3 cut(s) | 963, 1812, 2070 |
| SatI | GCNGC | 6 cut(s) | 32, 236, 297, 975, 978, 1692 |
| Sau3AI | GATC | 6 cut(s) | 64, 289, 626, 994, 1147, 1282 |
| Sau96I | GGNCC | 5 cut(s) | 1347, 1671, 1704, 1737, 1992 |
| ScaI | AGTACT | 4 cut(s) | 1474, 1606, 1927, 2171 |
| SchI | GAGTC | 2 cut(s) | 395, 1475 |
| SfcI | CTRYAG | 2 cut(s) | 1440, 2019 |
| Sfr274I | CTCGAG | 1 cut(s) | 1053 |
| SgrAI | CRCCGGYG | 1 cut(s) | 22 |
| SinI | GGWCC | 5 cut(s) | 1347, 1671, 1704, 1737, 1992 |
| SlaI | CTCGAG | 1 cut(s) | 1053 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 82 |
| SmlI | CTYRAG | 1 cut(s) | 1053 |
| SmoI | CTYRAG | 1 cut(s) | 1053 |
| SsiI | CCGC | 9 cut(s) | 80, 113, 236, 335, 476, 978, 1539, 1860, 2118 |
| SspMI | CTAG | 1 cut(s) | 1943 |
| StyI | CCWWGG | 2 cut(s) | 83, 990 |
| TaaI | ACNGT | 3 cut(s) | 104, 266, 1477 |
| TaiI | ACGT | 3 cut(s) | 147, 312, 445 |
| TatI | WGTACW | 6 cut(s) | 120, 1472, 1604, 1766, 1925, 2169 |
| TauI | GCSGC | 2 cut(s) | 238, 980 |
| TfiI | GAWTC | 3 cut(s) | 467, 1107, 1931 |
| Tru1I | TTAA | 3 cut(s) | 963, 1812, 2070 |
| Tru9I | TTAA | 3 cut(s) | 963, 1812, 2070 |
| TscAI | CASTG | 5 cut(s) | 499, 793, 1486, 1807, 2065 |
| TseI | GCWGC | 4 cut(s) | 31, 296, 974, 1691 |
| TspDTI | ATGAA | 2 cut(s) | 171, 329 |
| TspGWI | ACGGA | 1 cut(s) | 313 |
| TspRI | CASTG | 5 cut(s) | 499, 793, 1486, 1807, 2065 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 89 |
| VpaK11BI | GGWCC | 5 cut(s) | 1347, 1671, 1704, 1737, 1992 |
| XapI | RAATTY | 5 cut(s) | 367, 1120, 1217, 1240, 1372 |
| XceI | RCATGY | 3 cut(s) | 97, 1506, 1827 |
| XhoI | CTCGAG | 1 cut(s) | 1053 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1023, 1160 |
| XspI | CTAG | 1 cut(s) | 1943 |
| ZrmI | AGTACT | 4 cut(s) | 1474, 1606, 1927, 2171 |
| Zsp2I | ATGCAT | 1 cut(s) | 1191 |